Protein–RNA interactions for Protein: Q9Y2B5

VPS9D1, VPS9 domain-containing protein 1, humanhuman

Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1Q9Y2B5 AC096631.2-201ENST00000436136 790 ntBASIC21.41■■□□□ 1.02
VPS9D1Q9Y2B5 AL355987.3-201ENST00000456614 735 ntAPPRIS P1 TSL 4 BASIC21.41■■□□□ 1.02
VPS9D1Q9Y2B5 AC061979.1-201ENST00000532061 434 ntTSL 5 BASIC21.41■■□□□ 1.02
VPS9D1Q9Y2B5 GJD3-201ENST00000578689 885 ntAPPRIS P1 BASIC21.41■■□□□ 1.02
VPS9D1Q9Y2B5 ZNF843-201ENST00000315678 2137 ntAPPRIS P2 TSL 2 BASIC21.41■■□□□ 1.02
VPS9D1Q9Y2B5 FARP2-223ENST00000627550 2122 ntTSL 2 BASIC21.41■■□□□ 1.02
VPS9D1Q9Y2B5 MIR210HG-201ENST00000500447 1965 ntTSL 2 BASIC21.41■■□□□ 1.02
VPS9D1Q9Y2B5 ILDR2-205ENST00000526687 2299 ntTSL 5 BASIC21.4■■□□□ 1.02
VPS9D1Q9Y2B5 CNR1-203ENST00000369501 6031 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
VPS9D1Q9Y2B5 XPA-201ENST00000375128 1417 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
VPS9D1Q9Y2B5 IKBKG-212ENST00000617207 1949 ntAPPRIS ALT1 TSL 3 BASIC21.4■■□□□ 1.02
VPS9D1Q9Y2B5 IL20RA-202ENST00000367746 1244 ntTSL 2 BASIC21.4■■□□□ 1.02
VPS9D1Q9Y2B5 PRMT2-204ENST00000397628 954 ntTSL 2 BASIC21.4■■□□□ 1.02
VPS9D1Q9Y2B5 HM13-AS1-201ENST00000412178 489 ntTSL 3 BASIC21.4■■□□□ 1.02
VPS9D1Q9Y2B5 CKLF-205ENST00000417030 628 ntAPPRIS ALT2 TSL 4 BASIC21.4■■□□□ 1.02
VPS9D1Q9Y2B5 SERTAD4-AS1-202ENST00000475406 591 ntTSL 2 BASIC21.4■■□□□ 1.02
VPS9D1Q9Y2B5 CHTF8-208ENST00000522091 863 ntTSL 2 BASIC21.4■■□□□ 1.02
VPS9D1Q9Y2B5 AICDA-202ENST00000537228 667 ntTSL 5 BASIC21.4■■□□□ 1.02
VPS9D1Q9Y2B5 Z97653.1-201ENST00000567096 446 ntTSL 3 BASIC21.4■■□□□ 1.02
VPS9D1Q9Y2B5 PPP1R14A-204ENST00000591291 433 ntTSL 5 BASIC21.4■■□□□ 1.02
VPS9D1Q9Y2B5 B4GALNT1-202ENST00000418555 1861 ntTSL 2 BASIC21.4■■□□□ 1.02
VPS9D1Q9Y2B5 TMEM8B-203ENST00000377996 2473 ntTSL 2 BASIC21.4■■□□□ 1.02
VPS9D1Q9Y2B5 BASP1-203ENST00000616743 1711 ntAPPRIS P1 TSL 3 BASIC21.4■■□□□ 1.02
VPS9D1Q9Y2B5 CHRAC1-203ENST00000519533 1678 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
VPS9D1Q9Y2B5 GOLGA2P6-201ENST00000340929 2049 ntBASIC21.39■■□□□ 1.02
VPS9D1Q9Y2B5 PPP1R12C-201ENST00000263433 2924 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.02
VPS9D1Q9Y2B5 MEF2A-207ENST00000558812 2186 ntTSL 2 BASIC21.39■■□□□ 1.01
VPS9D1Q9Y2B5 PRR16-202ENST00000407149 1747 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
VPS9D1Q9Y2B5 MRPL41-201ENST00000371443 1262 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
VPS9D1Q9Y2B5 SLC26A1-203ENST00000398520 1111 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
VPS9D1Q9Y2B5 AL357078.1-201ENST00000448344 310 ntTSL 4 BASIC21.39■■□□□ 1.01
VPS9D1Q9Y2B5 CDKN3-207ENST00000543789 610 ntTSL 5 BASIC21.39■■□□□ 1.01
VPS9D1Q9Y2B5 AC106739.1-201ENST00000617035 715 ntBASIC21.39■■□□□ 1.01
VPS9D1Q9Y2B5 SMUG1-215ENST00000508394 1697 ntAPPRIS P1 TSL 2 BASIC21.39■■□□□ 1.01
VPS9D1Q9Y2B5 TLE3-216ENST00000559191 1575 ntTSL 5 BASIC21.39■■□□□ 1.01
VPS9D1Q9Y2B5 RNF166-202ENST00000537718 1525 ntTSL 2 BASIC21.39■■□□□ 1.01
VPS9D1Q9Y2B5 CHST7-201ENST00000276055 2289 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
VPS9D1Q9Y2B5 DENND1A-201ENST00000373618 3003 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
VPS9D1Q9Y2B5 PSPH-202ENST00000395471 2178 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
VPS9D1Q9Y2B5 DMPK-220ENST00000618091 2503 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
VPS9D1Q9Y2B5 MYO1C-203ENST00000438665 4898 ntAPPRIS ALT1 TSL 5 BASIC21.38■■□□□ 1.01
VPS9D1Q9Y2B5 EDA-201ENST00000338901 1233 ntBASIC21.38■■□□□ 1.01
VPS9D1Q9Y2B5 C20orf144-201ENST00000375222 571 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
VPS9D1Q9Y2B5 POLR2F-203ENST00000407936 582 ntTSL 3 BASIC21.38■■□□□ 1.01
VPS9D1Q9Y2B5 AC068580.1-201ENST00000446489 252 ntTSL 3 BASIC21.38■■□□□ 1.01
VPS9D1Q9Y2B5 CREB3L2-203ENST00000452463 1105 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
VPS9D1Q9Y2B5 POLR2F-207ENST00000460648 518 ntTSL 4 BASIC21.38■■□□□ 1.01
VPS9D1Q9Y2B5 PBX2P1-201ENST00000493219 1291 ntBASIC21.38■■□□□ 1.01
VPS9D1Q9Y2B5 AC093249.6-202ENST00000568500 1142 ntTSL 2 BASIC21.38■■□□□ 1.01
VPS9D1Q9Y2B5 AC126544.1-201ENST00000580842 1059 ntBASIC21.38■■□□□ 1.01
VPS9D1Q9Y2B5 MPST-208ENST00000628507 698 ntTSL 5 BASIC21.38■■□□□ 1.01
VPS9D1Q9Y2B5 SMG7-AS1-201ENST00000421703 2220 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
VPS9D1Q9Y2B5 VPS9D1-AS1-202ENST00000562866 1753 ntTSL 2 BASIC21.38■■□□□ 1.01
VPS9D1Q9Y2B5 TMCC2-209ENST00000637895 1455 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
VPS9D1Q9Y2B5 AZIN2-204ENST00000373443 2048 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
VPS9D1Q9Y2B5 CADPS-202ENST00000357948 5190 ntAPPRIS ALT2 TSL 1 (best) BASIC21.38■■□□□ 1.01
VPS9D1Q9Y2B5 PGF-201ENST00000238607 1693 ntAPPRIS ALT2 TSL 3 BASIC21.37■■□□□ 1.01
VPS9D1Q9Y2B5 DES-201ENST00000373960 2248 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
VPS9D1Q9Y2B5 HRK-201ENST00000257572 5789 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
VPS9D1Q9Y2B5 BRWD1-202ENST00000341322 2495 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
VPS9D1Q9Y2B5 MFSD6L-201ENST00000329805 2188 ntAPPRIS P1 BASIC21.37■■□□□ 1.01
VPS9D1Q9Y2B5 RIOX1-201ENST00000304061 2429 ntAPPRIS P1 BASIC21.37■■□□□ 1.01
VPS9D1Q9Y2B5 PHLDB2-210ENST00000478922 1861 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
VPS9D1Q9Y2B5 GCH1-206ENST00000543643 1897 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
VPS9D1Q9Y2B5 LINC02175-201ENST00000571219 1875 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
VPS9D1Q9Y2B5 NISCH-201ENST00000345716 5238 ntAPPRIS P3 TSL 1 (best) BASIC21.37■■□□□ 1.01
VPS9D1Q9Y2B5 PDK3-201ENST00000379162 1809 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
VPS9D1Q9Y2B5 CAMTA1-208ENST00000473578 567 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
VPS9D1Q9Y2B5 AC027682.1-201ENST00000562846 899 ntBASIC21.37■■□□□ 1.01
VPS9D1Q9Y2B5 EIF2B4-211ENST00000616081 1754 ntTSL 5 BASIC21.37■■□□□ 1.01
VPS9D1Q9Y2B5 PFKFB3-216ENST00000625260 1752 ntAPPRIS ALT1 TSL 5 BASIC21.37■■□□□ 1.01
VPS9D1Q9Y2B5 PGRMC2-201ENST00000296425 2767 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
VPS9D1Q9Y2B5 MRPL37-202ENST00000360840 1483 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
VPS9D1Q9Y2B5 NFIX-203ENST00000397661 3143 ntTSL 5 BASIC21.37■■□□□ 1.01
VPS9D1Q9Y2B5 MANEAL-203ENST00000397631 2327 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
VPS9D1Q9Y2B5 B4GAT1-201ENST00000311181 2072 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
VPS9D1Q9Y2B5 AKR7A2-201ENST00000235835 1362 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
VPS9D1Q9Y2B5 ZNF419-203ENST00000354197 1569 ntTSL 5 BASIC21.36■■□□□ 1.01
VPS9D1Q9Y2B5 TMEM25-205ENST00000411589 2442 ntAPPRIS ALT2 TSL 2 BASIC21.36■■□□□ 1.01
VPS9D1Q9Y2B5 C11orf91-201ENST00000379011 811 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
VPS9D1Q9Y2B5 CDKN2B-202ENST00000380142 859 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
VPS9D1Q9Y2B5 TUSC3-209ENST00000509380 1266 ntTSL 5 BASIC21.36■■□□□ 1.01
VPS9D1Q9Y2B5 HRH3-203ENST00000611492 900 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
VPS9D1Q9Y2B5 BAG1-212ENST00000641048 1038 ntAPPRIS P3 BASIC21.36■■□□□ 1.01
VPS9D1Q9Y2B5 TBC1D12-201ENST00000225235 5272 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
VPS9D1Q9Y2B5 WT1-210ENST00000639563 1494 ntAPPRIS ALT2 TSL 1 (best) BASIC21.36■■□□□ 1.01
VPS9D1Q9Y2B5 KIF2A-202ENST00000401507 2539 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
VPS9D1Q9Y2B5 CNTFR-202ENST00000378980 2052 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
VPS9D1Q9Y2B5 ATP9A-202ENST00000338821 8106 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
VPS9D1Q9Y2B5 TANGO2-202ENST00000398042 2011 ntTSL 2 BASIC21.36■■□□□ 1.01
VPS9D1Q9Y2B5 AKT2-234ENST00000579047 2029 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
VPS9D1Q9Y2B5 FBXW4P1-201ENST00000426721 2239 ntBASIC21.36■■□□□ 1.01
VPS9D1Q9Y2B5 TCF3-203ENST00000395423 2779 ntTSL 5 BASIC21.35■■□□□ 1.01
VPS9D1Q9Y2B5 IGHV3-19-201ENST00000521488 291 ntBASIC21.35■■□□□ 1.01
VPS9D1Q9Y2B5 SCO2-204ENST00000543927 1051 ntAPPRIS P1 TSL 2 BASIC21.35■■□□□ 1.01
VPS9D1Q9Y2B5 AC133561.4-201ENST00000566112 224 ntBASIC21.35■■□□□ 1.01
VPS9D1Q9Y2B5 CTAG1A-201ENST00000593606 993 ntTSL 5 BASIC21.35■■□□□ 1.01
VPS9D1Q9Y2B5 MYDGF-203ENST00000599630 713 ntTSL 2 BASIC21.35■■□□□ 1.01
VPS9D1Q9Y2B5 CCDC106-207ENST00000591578 1592 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
VPS9D1Q9Y2B5 LLGL2-202ENST00000375227 1374 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
Retrieved 100 of 98,524 protein–RNA pairs in 51.4 ms