Protein–RNA interactions for Protein: Q9NUP1

BLOC1S4, Biogenesis of lysosome-related organelles complex 1 subunit 4, humanhuman

Predictions only

Length 217 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BLOC1S4Q9NUP1 IRX2-202ENST00000382611 2630 ntAPPRIS P1 TSL 1 (best) BASIC24.24■■□□□ 1.47
BLOC1S4Q9NUP1 CKLF-205ENST00000417030 628 ntAPPRIS ALT2 TSL 4 BASIC24.24■■□□□ 1.47
BLOC1S4Q9NUP1 AF213884.3-201ENST00000563833 479 ntBASIC24.24■■□□□ 1.47
BLOC1S4Q9NUP1 AC087239.1-201ENST00000622671 572 ntBASIC24.24■■□□□ 1.47
BLOC1S4Q9NUP1 AL136967.2-201ENST00000623968 743 ntBASIC24.24■■□□□ 1.47
BLOC1S4Q9NUP1 SRRM2-231ENST00000630499 1207 ntTSL 1 (best) BASIC24.24■■□□□ 1.47
BLOC1S4Q9NUP1 HOXA10-201ENST00000283921 2541 ntAPPRIS P2 TSL 1 (best) BASIC24.24■■□□□ 1.47
BLOC1S4Q9NUP1 DPP7-201ENST00000371579 1590 ntAPPRIS P1 TSL 1 (best) BASIC24.24■■□□□ 1.47
BLOC1S4Q9NUP1 C22orf34-203ENST00000405854 1593 ntTSL 5 BASIC24.24■■□□□ 1.47
BLOC1S4Q9NUP1 KDELR1-203ENST00000597017 1594 ntTSL 2 BASIC24.24■■□□□ 1.47
BLOC1S4Q9NUP1 ZNF517-207ENST00000531720 1615 ntAPPRIS P1 TSL 1 (best) BASIC24.24■■□□□ 1.47
BLOC1S4Q9NUP1 FASTK-212ENST00000482571 1764 ntTSL 1 (best) BASIC24.24■■□□□ 1.47
BLOC1S4Q9NUP1 ZSWIM7-201ENST00000399277 2008 ntAPPRIS P1 TSL 1 (best) BASIC24.23■■□□□ 1.47
BLOC1S4Q9NUP1 NEIL1-206ENST00000564784 2019 ntAPPRIS P1 TSL 2 BASIC24.23■■□□□ 1.47
BLOC1S4Q9NUP1 SLC35A3-204ENST00000427993 2062 ntAPPRIS P1 TSL 5 BASIC24.23■■□□□ 1.47
BLOC1S4Q9NUP1 PLEKHA8-208ENST00000622102 2140 ntTSL 5 BASIC24.23■■□□□ 1.47
BLOC1S4Q9NUP1 SELENOO-201ENST00000380903 2315 ntAPPRIS P2 TSL 1 (best) BASIC24.23■■□□□ 1.47
BLOC1S4Q9NUP1 NELFCD-213ENST00000602795 2305 ntAPPRIS P1 TSL 1 (best) BASIC24.23■■□□□ 1.47
BLOC1S4Q9NUP1 SELENOO-203ENST00000611222 2311 ntAPPRIS ALT2 TSL 5 BASIC24.23■■□□□ 1.47
BLOC1S4Q9NUP1 PHPT1-201ENST00000247665 890 ntAPPRIS P1 TSL 1 (best) BASIC24.23■■□□□ 1.47
BLOC1S4Q9NUP1 MYDGF-203ENST00000599630 713 ntTSL 2 BASIC24.23■■□□□ 1.47
BLOC1S4Q9NUP1 SMUG1-215ENST00000508394 1697 ntAPPRIS P1 TSL 2 BASIC24.23■■□□□ 1.47
BLOC1S4Q9NUP1 CD6-203ENST00000352009 1809 ntAPPRIS ALT2 TSL 1 (best) BASIC24.23■■□□□ 1.47
BLOC1S4Q9NUP1 UCHL5-205ENST00000367454 1815 ntAPPRIS ALT1 TSL 1 (best) BASIC24.23■■□□□ 1.47
BLOC1S4Q9NUP1 ZGPAT-201ENST00000328969 1945 ntTSL 2 BASIC24.23■■□□□ 1.47
BLOC1S4Q9NUP1 FDFT1-201ENST00000220584 2176 ntAPPRIS P1 TSL 1 (best) BASIC24.23■■□□□ 1.47
BLOC1S4Q9NUP1 NOTUM-201ENST00000409678 2329 ntAPPRIS P1 TSL 1 (best) BASIC24.23■■□□□ 1.47
BLOC1S4Q9NUP1 PLPP5-203ENST00000424479 2130 ntAPPRIS P1 TSL 1 (best) BASIC24.22■■□□□ 1.47
BLOC1S4Q9NUP1 MXRA8-203ENST00000445648 2001 ntTSL 2 BASIC24.22■■□□□ 1.47
BLOC1S4Q9NUP1 ALDH6A1-201ENST00000350259 1869 ntAPPRIS ALT2 TSL 2 BASIC24.22■■□□□ 1.47
BLOC1S4Q9NUP1 MRPL37-202ENST00000360840 1483 ntAPPRIS P1 TSL 1 (best) BASIC24.22■■□□□ 1.47
BLOC1S4Q9NUP1 AP1S1-201ENST00000337619 1306 ntAPPRIS P1 TSL 1 (best) BASIC24.22■■□□□ 1.47
BLOC1S4Q9NUP1 LAMTOR1-201ENST00000278671 1179 ntAPPRIS P1 TSL 1 (best) BASIC24.22■■□□□ 1.47
BLOC1S4Q9NUP1 AC061979.1-201ENST00000532061 434 ntTSL 5 BASIC24.22■■□□□ 1.47
BLOC1S4Q9NUP1 AC027682.1-201ENST00000562846 899 ntBASIC24.22■■□□□ 1.47
BLOC1S4Q9NUP1 RNF149-201ENST00000295317 2458 ntAPPRIS P1 TSL 1 (best) BASIC24.22■■□□□ 1.47
BLOC1S4Q9NUP1 DNAJC25-201ENST00000313525 2268 ntAPPRIS P1 TSL 1 (best) BASIC24.22■■□□□ 1.47
BLOC1S4Q9NUP1 DUX4-203ENST00000565211 1710 ntAPPRIS P2 TSL 1 (best) BASIC24.21■■□□□ 1.47
BLOC1S4Q9NUP1 FOXJ1-201ENST00000322957 2641 ntAPPRIS P1 TSL 1 (best) BASIC24.21■■□□□ 1.47
BLOC1S4Q9NUP1 MFSD7-209ENST00000515118 1556 ntTSL 5 BASIC24.21■■□□□ 1.47
BLOC1S4Q9NUP1 LINC00565-201ENST00000562710 2331 ntBASIC24.21■■□□□ 1.47
BLOC1S4Q9NUP1 SETD9-211ENST00000628593 1306 ntTSL 1 (best) BASIC24.21■■□□□ 1.47
BLOC1S4Q9NUP1 CTAG2-202ENST00000369585 748 ntAPPRIS P1 TSL 1 (best) BASIC24.21■■□□□ 1.47
BLOC1S4Q9NUP1 MRPL41-201ENST00000371443 1262 ntAPPRIS P1 TSL 1 (best) BASIC24.21■■□□□ 1.47
BLOC1S4Q9NUP1 AC126544.1-201ENST00000580842 1059 ntBASIC24.21■■□□□ 1.47
BLOC1S4Q9NUP1 MPST-208ENST00000628507 698 ntTSL 5 BASIC24.21■■□□□ 1.47
BLOC1S4Q9NUP1 CFAP99-206ENST00000616117 1941 ntAPPRIS P1 TSL 5 BASIC24.21■■□□□ 1.47
BLOC1S4Q9NUP1 C11orf96-202ENST00000528572 1834 ntBASIC24.21■■□□□ 1.47
BLOC1S4Q9NUP1 SLC41A3-202ENST00000346785 1705 ntTSL 2 BASIC24.21■■□□□ 1.47
BLOC1S4Q9NUP1 FAM72A-202ENST00000367128 2398 ntAPPRIS P1 TSL 1 (best) BASIC24.21■■□□□ 1.47
BLOC1S4Q9NUP1 FAM72D-201ENST00000400889 2397 ntAPPRIS P1 TSL 1 (best) BASIC24.21■■□□□ 1.47
BLOC1S4Q9NUP1 XPA-201ENST00000375128 1417 ntAPPRIS P1 TSL 1 (best) BASIC24.2■■□□□ 1.46
BLOC1S4Q9NUP1 FPGS-202ENST00000373228 1383 ntTSL 5 BASIC24.2■■□□□ 1.46
BLOC1S4Q9NUP1 AC092384.1-201ENST00000378347 1812 ntTSL 2 BASIC24.2■■□□□ 1.46
BLOC1S4Q9NUP1 ZDHHC16-205ENST00000370846 1280 ntTSL 3 BASIC24.2■■□□□ 1.46
BLOC1S4Q9NUP1 C20orf144-201ENST00000375222 571 ntAPPRIS P1 TSL 1 (best) BASIC24.2■■□□□ 1.46
BLOC1S4Q9NUP1 SLC26A1-203ENST00000398520 1111 ntTSL 1 (best) BASIC24.2■■□□□ 1.46
BLOC1S4Q9NUP1 HSPE1-203ENST00000409729 478 ntTSL 2 BASIC24.2■■□□□ 1.46
BLOC1S4Q9NUP1 SYNGR3-206ENST00000618464 1213 ntTSL 1 (best) BASIC24.2■■□□□ 1.46
BLOC1S4Q9NUP1 PPT2-244ENST00000324816 2053 ntAPPRIS ALT2 TSL 1 (best) BASIC24.2■■□□□ 1.46
BLOC1S4Q9NUP1 BBC3-202ENST00000341983 1538 ntTSL 1 (best) BASIC24.2■■□□□ 1.46
BLOC1S4Q9NUP1 SIRT3-204ENST00000525319 1475 ntAPPRIS ALT2 TSL 2 BASIC24.19■■□□□ 1.46
BLOC1S4Q9NUP1 IL15RA-206ENST00000397248 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC24.19■■□□□ 1.46
BLOC1S4Q9NUP1 KBTBD13-201ENST00000432196 1377 ntAPPRIS P1 BASIC24.19■■□□□ 1.46
BLOC1S4Q9NUP1 RNF180-201ENST00000296615 1727 ntTSL 1 (best) BASIC24.19■■□□□ 1.46
BLOC1S4Q9NUP1 CCDC107-205ENST00000421582 1324 ntAPPRIS ALT2 TSL 2 BASIC24.19■■□□□ 1.46
BLOC1S4Q9NUP1 ZNF37BP-201ENST00000435805 1695 ntTSL 5 BASIC24.19■■□□□ 1.46
BLOC1S4Q9NUP1 INS-202ENST00000381330 597 ntAPPRIS P1 TSL 1 (best) BASIC24.19■■□□□ 1.46
BLOC1S4Q9NUP1 IGHV3-19-201ENST00000521488 291 ntBASIC24.19■■□□□ 1.46
BLOC1S4Q9NUP1 AC104564.5-201ENST00000584986 278 ntTSL 3 BASIC24.19■■□□□ 1.46
BLOC1S4Q9NUP1 DIRAS1-202ENST00000585334 774 ntAPPRIS P1 BASIC24.19■■□□□ 1.46
BLOC1S4Q9NUP1 DYRK1B-204ENST00000593685 2724 ntAPPRIS P3 TSL 5 BASIC24.19■■□□□ 1.46
BLOC1S4Q9NUP1 SLC25A39-201ENST00000225308 1607 ntAPPRIS P3 TSL 1 (best) BASIC24.19■■□□□ 1.46
BLOC1S4Q9NUP1 GRM6-202ENST00000517717 2673 ntAPPRIS P1 TSL 5 BASIC24.19■■□□□ 1.46
BLOC1S4Q9NUP1 FAM19A5-202ENST00000358295 2638 ntAPPRIS P1 TSL 2 BASIC24.19■■□□□ 1.46
BLOC1S4Q9NUP1 CCNG2-204ENST00000502280 1459 ntAPPRIS P1 TSL 2 BASIC24.19■■□□□ 1.46
BLOC1S4Q9NUP1 ADCK2-203ENST00000476491 2092 ntTSL 1 (best) BASIC24.19■■□□□ 1.46
BLOC1S4Q9NUP1 RPL13-202ENST00000393099 2385 ntAPPRIS P1 TSL 1 (best) BASIC24.18■■□□□ 1.46
BLOC1S4Q9NUP1 KRTAP5-7-201ENST00000398536 1408 ntAPPRIS P1 BASIC24.18■■□□□ 1.46
BLOC1S4Q9NUP1 KHDRBS2-201ENST00000281156 2332 ntAPPRIS P1 TSL 1 (best) BASIC24.18■■□□□ 1.46
BLOC1S4Q9NUP1 RASA4CP-201ENST00000424092 1398 ntBASIC24.18■■□□□ 1.46
BLOC1S4Q9NUP1 EXOG-203ENST00000422077 1317 ntTSL 2 BASIC24.18■■□□□ 1.46
BLOC1S4Q9NUP1 UBALD1-208ENST00000591401 1305 ntTSL 5 BASIC24.18■■□□□ 1.46
BLOC1S4Q9NUP1 MCRIP1-205ENST00000572645 1038 ntTSL 1 (best) BASIC24.18■■□□□ 1.46
BLOC1S4Q9NUP1 RALB-208ENST00000631312 311 ntTSL 5 BASIC24.18■■□□□ 1.46
BLOC1S4Q9NUP1 AZIN2-204ENST00000373443 2048 ntAPPRIS P1 TSL 1 (best) BASIC24.18■■□□□ 1.46
BLOC1S4Q9NUP1 TRAF4-205ENST00000444415 1456 ntTSL 5 BASIC24.18■■□□□ 1.46
BLOC1S4Q9NUP1 ATP8A1-207ENST00000510289 2238 ntTSL 1 (best) BASIC24.18■■□□□ 1.46
BLOC1S4Q9NUP1 OR7E47P-201ENST00000546390 1422 ntBASIC24.18■■□□□ 1.46
BLOC1S4Q9NUP1 FARP2-223ENST00000627550 2122 ntTSL 2 BASIC24.17■■□□□ 1.46
BLOC1S4Q9NUP1 P4HA3-202ENST00000427714 2248 ntTSL 2 BASIC24.17■■□□□ 1.46
BLOC1S4Q9NUP1 MIR638-201ENST00000385237 100 ntBASIC24.17■■□□□ 1.46
BLOC1S4Q9NUP1 POLR2F-203ENST00000407936 582 ntTSL 3 BASIC24.17■■□□□ 1.46
BLOC1S4Q9NUP1 ZEB1-AS1-201ENST00000423714 456 ntTSL 3 BASIC24.17■■□□□ 1.46
BLOC1S4Q9NUP1 POLR2F-207ENST00000460648 518 ntTSL 4 BASIC24.17■■□□□ 1.46
BLOC1S4Q9NUP1 AC091305.1-201ENST00000479476 895 ntBASIC24.17■■□□□ 1.46
BLOC1S4Q9NUP1 AC009097.2-201ENST00000562763 465 ntTSL 2 BASIC24.17■■□□□ 1.46
BLOC1S4Q9NUP1 NKX2-5-201ENST00000329198 1709 ntAPPRIS P1 TSL 1 (best) BASIC24.17■■□□□ 1.46
BLOC1S4Q9NUP1 POMZP3-202ENST00000310842 1490 ntAPPRIS P1 TSL 1 (best) BASIC24.17■■□□□ 1.46
BLOC1S4Q9NUP1 PPP3CC-202ENST00000289963 2135 ntAPPRIS ALT1 TSL 1 (best) BASIC24.17■■□□□ 1.46
Retrieved 100 of 98,524 protein–RNA pairs in 24.4 ms