Protein–RNA interactions for Protein: P78363

ABCA4, Retinal-specific ATP-binding cassette transporter, humanhuman

Predictions only

Length 2,273 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA4P78363 MPND-202ENST00000359935 1475 ntAPPRIS ALT2 TSL 2 BASIC18.71■□□□□ 0.59
ABCA4P78363 CERKL-203ENST00000374969 1330 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
ABCA4P78363 POLR2J-202ENST00000393794 784 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
ABCA4P78363 MIR4651-201ENST00000582622 73 ntBASIC18.71■□□□□ 0.59
ABCA4P78363 ZNF561-AS1-205ENST00000588765 579 ntTSL 4 BASIC18.71■□□□□ 0.59
ABCA4P78363 AC093762.3-201ENST00000641918 318 ntAPPRIS P1 BASIC18.71■□□□□ 0.59
ABCA4P78363 GLT8D2-205ENST00000548660 1835 ntAPPRIS P1 TSL 2 BASIC18.71■□□□□ 0.59
ABCA4P78363 CEBPD-201ENST00000408965 2178 ntAPPRIS P1 BASIC18.71■□□□□ 0.59
ABCA4P78363 GET4-201ENST00000265857 2090 ntAPPRIS P2 TSL 1 (best) BASIC18.71■□□□□ 0.59
ABCA4P78363 TMCC2-209ENST00000637895 1455 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
ABCA4P78363 MIR222HG-201ENST00000602461 1379 ntTSL 5 BASIC18.71■□□□□ 0.59
ABCA4P78363 SLC22A31-206ENST00000614943 1860 ntTSL 5 BASIC18.71■□□□□ 0.59
ABCA4P78363 METTL26-203ENST00000397664 604 ntTSL 2 BASIC18.71■□□□□ 0.59
ABCA4P78363 KANSL1-AS1-201ENST00000398275 517 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
ABCA4P78363 TRNT1-207ENST00000420393 854 ntTSL 3 BASIC18.71■□□□□ 0.59
ABCA4P78363 AC027307.1-201ENST00000590252 457 ntTSL 5 BASIC18.71■□□□□ 0.59
ABCA4P78363 BASP1-203ENST00000616743 1711 ntAPPRIS P1 TSL 3 BASIC18.71■□□□□ 0.59
ABCA4P78363 ARMC10-205ENST00000428183 2445 ntTSL 1 (best) BASIC18.71■□□□□ 0.58
ABCA4P78363 JDP2-202ENST00000419727 972 ntAPPRIS P1 TSL 2 BASIC18.7■□□□□ 0.58
ABCA4P78363 AC011767.1-201ENST00000617410 1153 ntBASIC18.7■□□□□ 0.58
ABCA4P78363 MAPK9-206ENST00000425491 2266 ntTSL 5 BASIC18.7■□□□□ 0.58
ABCA4P78363 MID1IP1-203ENST00000457894 1902 ntAPPRIS P1 TSL 3 BASIC18.7■□□□□ 0.58
ABCA4P78363 PYCR1-202ENST00000337943 1890 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
ABCA4P78363 EPO-201ENST00000252723 1330 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
ABCA4P78363 VSTM4-201ENST00000298454 2170 ntAPPRIS P3 TSL 2 BASIC18.7■□□□□ 0.58
ABCA4P78363 C5AR2-202ENST00000600626 1287 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
ABCA4P78363 SAMD4B-208ENST00000598913 2877 ntAPPRIS ALT1 TSL 1 (best) BASIC18.7■□□□□ 0.58
ABCA4P78363 C7orf26-202ENST00000359073 1762 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
ABCA4P78363 B3GALNT2-202ENST00000366600 2015 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
ABCA4P78363 ABHD12B-201ENST00000337334 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
ABCA4P78363 USP45-205ENST00000472914 1617 ntTSL 5 BASIC18.69■□□□□ 0.58
ABCA4P78363 NAE1-202ENST00000359087 1825 ntTSL 2 BASIC18.69■□□□□ 0.58
ABCA4P78363 PLEKHJ1-206ENST00000587962 1311 ntTSL 2 BASIC18.69■□□□□ 0.58
ABCA4P78363 MDK-204ENST00000395569 686 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
ABCA4P78363 GUSBP6-202ENST00000438529 1198 ntBASIC18.69■□□□□ 0.58
ABCA4P78363 ID2-201ENST00000234091 2041 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
ABCA4P78363 HSPB2-201ENST00000304298 1335 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
ABCA4P78363 TMPO-201ENST00000261210 820 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
ABCA4P78363 TMEM218-201ENST00000279968 1034 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
ABCA4P78363 AL355102.2-201ENST00000553811 600 ntAPPRIS P1 TSL 2 BASIC18.69■□□□□ 0.58
ABCA4P78363 AC005697.1-201ENST00000582441 582 ntAPPRIS P1 TSL 4 BASIC18.69■□□□□ 0.58
ABCA4P78363 PARD6A-203ENST00000602551 1171 ntTSL 5 BASIC18.69■□□□□ 0.58
ABCA4P78363 OSR2-210ENST00000523368 1519 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
ABCA4P78363 RAP2A-201ENST00000245304 5487 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
ABCA4P78363 PTPA-202ENST00000347048 1989 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
ABCA4P78363 ZYX-201ENST00000322764 2493 ntAPPRIS P2 TSL 1 (best) BASIC18.68■□□□□ 0.58
ABCA4P78363 CCDC74B-205ENST00000409943 1296 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
ABCA4P78363 PHLDB3-207ENST00000599242 2286 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
ABCA4P78363 PLEKHA8-202ENST00000396257 1907 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
ABCA4P78363 AC055733.4-201ENST00000638462 1354 ntBASIC18.68■□□□□ 0.58
ABCA4P78363 TNFRSF18-201ENST00000328596 851 ntAPPRIS P4 TSL 1 (best) BASIC18.67■□□□□ 0.58
ABCA4P78363 MOB2-201ENST00000329957 1207 ntAPPRIS P1 TSL 2 BASIC18.67■□□□□ 0.58
ABCA4P78363 TSPAN4-206ENST00000397408 1430 ntAPPRIS P1 TSL 2 BASIC18.67■□□□□ 0.58
ABCA4P78363 RAB6B-203ENST00000469959 500 ntTSL 3 BASIC18.67■□□□□ 0.58
ABCA4P78363 AC025164.2-201ENST00000501008 1898 ntTSL 5 BASIC18.67■□□□□ 0.58
ABCA4P78363 MVB12A-212ENST00000543795 1154 ntAPPRIS P1 TSL 5 BASIC18.67■□□□□ 0.58
ABCA4P78363 LOXL1-AS1-208ENST00000565756 885 ntTSL 2 BASIC18.67■□□□□ 0.58
ABCA4P78363 IRF2BP1-201ENST00000302165 2564 ntAPPRIS P1 BASIC18.67■□□□□ 0.58
ABCA4P78363 EEF1D-256ENST00000618139 2238 ntTSL 5 BASIC18.67■□□□□ 0.58
ABCA4P78363 ASPSCR1-208ENST00000580534 1776 ntTSL 2 BASIC18.67■□□□□ 0.58
ABCA4P78363 PNLIPRP2-204ENST00000591655 1456 ntAPPRIS ALT1 TSL 5 BASIC18.67■□□□□ 0.58
ABCA4P78363 AC009237.3-201ENST00000393279 1427 ntBASIC18.67■□□□□ 0.58
ABCA4P78363 LTC4S-202ENST00000401985 486 ntTSL 3 BASIC18.67■□□□□ 0.58
ABCA4P78363 CMTM8-202ENST00000458535 996 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
ABCA4P78363 ZNF717-203ENST00000477374 1169 ntTSL 2 BASIC18.67■□□□□ 0.58
ABCA4P78363 LITAF-205ENST00000570904 1118 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
ABCA4P78363 MFSD14C-203ENST00000602917 786 ntAPPRIS P5 TSL 1 (best) BASIC18.67■□□□□ 0.58
ABCA4P78363 PTMS-207ENST00000619580 1150 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
ABCA4P78363 FNDC5-207ENST00000640867 639 ntAPPRIS P2 TSL 2 BASIC18.67■□□□□ 0.58
ABCA4P78363 INPP1-201ENST00000322522 1919 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
ABCA4P78363 PLAGL1-207ENST00000417959 1645 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
ABCA4P78363 TBXA2R-202ENST00000411851 1494 ntTSL 2 BASIC18.67■□□□□ 0.58
ABCA4P78363 ILKAP-211ENST00000612675 1335 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
ABCA4P78363 ADARB2-202ENST00000381310 1810 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
ABCA4P78363 USP45-202ENST00000329966 1444 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
ABCA4P78363 PXK-203ENST00000383715 1756 ntTSL 5 BASIC18.66■□□□□ 0.58
ABCA4P78363 RAB3A-201ENST00000222256 1528 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
ABCA4P78363 RHOD-201ENST00000308831 1129 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
ABCA4P78363 C19orf73-201ENST00000408991 744 ntAPPRIS P1 BASIC18.66■□□□□ 0.58
ABCA4P78363 CDKN3-204ENST00000442975 727 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
ABCA4P78363 AC010141.3-201ENST00000456659 717 ntBASIC18.66■□□□□ 0.58
ABCA4P78363 ATPIF1-204ENST00000497986 599 ntTSL 2 BASIC18.66■□□□□ 0.58
ABCA4P78363 SLC19A1-212ENST00000567670 2029 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
ABCA4P78363 IGFBP1-201ENST00000275525 1653 ntAPPRIS P2 TSL 1 (best) BASIC18.66■□□□□ 0.58
ABCA4P78363 CD58-203ENST00000457047 1328 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
ABCA4P78363 TMED4-205ENST00000481238 1755 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
ABCA4P78363 AP004608.1-201ENST00000531319 1402 ntTSL 2 BASIC18.66■□□□□ 0.58
ABCA4P78363 AC074212.1-201ENST00000559756 1402 ntTSL 3 BASIC18.66■□□□□ 0.58
ABCA4P78363 ROGDI-201ENST00000322048 1735 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
ABCA4P78363 KHDC3L-201ENST00000370367 1018 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
ABCA4P78363 CHTF8-210ENST00000523421 766 ntTSL 3 BASIC18.66■□□□□ 0.58
ABCA4P78363 C10orf95-201ENST00000625129 1469 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
ABCA4P78363 LINC01960-201ENST00000563759 1884 ntBASIC18.65■□□□□ 0.58
ABCA4P78363 BCL2L12-212ENST00000616144 1854 ntAPPRIS P3 TSL 1 (best) BASIC18.65■□□□□ 0.58
ABCA4P78363 HRH3-202ENST00000340177 2659 ntAPPRIS P2 TSL 1 (best) BASIC18.65■□□□□ 0.58
ABCA4P78363 NKX2-5-201ENST00000329198 1709 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
ABCA4P78363 C5orf58-204ENST00000521850 2113 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
ABCA4P78363 PDLIM2-202ENST00000308354 2236 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
ABCA4P78363 PDLIM2-203ENST00000339162 2226 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
ABCA4P78363 ADAMTS13-204ENST00000371911 1155 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 23.5 ms