Protein–RNA interactions for Protein: Q9Y2B5

VPS9D1, VPS9 domain-containing protein 1, humanhuman

Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1Q9Y2B5 LINC01632-201ENST00000615763 496 ntTSL 3 BASIC21.61■■□□□ 1.05
VPS9D1Q9Y2B5 C11orf96-202ENST00000528572 1834 ntBASIC21.61■■□□□ 1.05
VPS9D1Q9Y2B5 ZNF584-203ENST00000593920 2187 ntTSL 2 BASIC21.61■■□□□ 1.05
VPS9D1Q9Y2B5 TRH-201ENST00000302649 1978 ntAPPRIS P2 TSL 1 (best) BASIC21.61■■□□□ 1.05
VPS9D1Q9Y2B5 SPATA2L-201ENST00000289805 2335 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
VPS9D1Q9Y2B5 TPM4-201ENST00000300933 2666 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
VPS9D1Q9Y2B5 CENPH-201ENST00000283006 1389 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
VPS9D1Q9Y2B5 PIP5KL1-202ENST00000388747 2198 ntAPPRIS P1 TSL 5 BASIC21.6■■□□□ 1.05
VPS9D1Q9Y2B5 CCNG2-204ENST00000502280 1459 ntAPPRIS P1 TSL 2 BASIC21.6■■□□□ 1.05
VPS9D1Q9Y2B5 NOTUM-201ENST00000409678 2329 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
VPS9D1Q9Y2B5 MAST4-205ENST00000406039 717 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
VPS9D1Q9Y2B5 AC004707.1-201ENST00000511627 715 ntTSL 3 BASIC21.6■■□□□ 1.05
VPS9D1Q9Y2B5 AC079089.2-201ENST00000531211 1277 ntBASIC21.6■■□□□ 1.05
VPS9D1Q9Y2B5 TGFBR3L-202ENST00000565886 1260 ntAPPRIS P1 TSL 5 BASIC21.6■■□□□ 1.05
VPS9D1Q9Y2B5 RPRD1A-207ENST00000588737 1264 ntTSL 2 BASIC21.6■■□□□ 1.05
VPS9D1Q9Y2B5 MIR222HG-202ENST00000602507 1758 ntTSL 5 BASIC21.6■■□□□ 1.05
VPS9D1Q9Y2B5 MTURN-201ENST00000324453 5937 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
VPS9D1Q9Y2B5 MIS18A-201ENST00000290130 1575 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
VPS9D1Q9Y2B5 CAPN12-212ENST00000601953 2381 ntTSL 5 BASIC21.6■■□□□ 1.05
VPS9D1Q9Y2B5 DTX4-201ENST00000227451 5642 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
VPS9D1Q9Y2B5 ENKD1-206ENST00000602644 1353 ntTSL 5 BASIC21.6■■□□□ 1.05
VPS9D1Q9Y2B5 IMPA2-201ENST00000269159 1534 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
VPS9D1Q9Y2B5 POTED-202ENST00000620442 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC21.59■■□□□ 1.05
VPS9D1Q9Y2B5 PHLDB3-207ENST00000599242 2286 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
VPS9D1Q9Y2B5 AC073188.6-202ENST00000616616 2281 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
VPS9D1Q9Y2B5 SNX21-212ENST00000491381 1607 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
VPS9D1Q9Y2B5 OAZ2-201ENST00000326005 1934 ntAPPRIS P1 TSL 5 BASIC21.59■■□□□ 1.05
VPS9D1Q9Y2B5 AC080112.2-201ENST00000578774 2094 ntTSL 4 BASIC21.59■■□□□ 1.05
VPS9D1Q9Y2B5 TMEM165-204ENST00000506198 828 ntTSL 2 BASIC21.59■■□□□ 1.05
VPS9D1Q9Y2B5 CCER2-201ENST00000571838 1057 ntAPPRIS P2 TSL 5 BASIC21.59■■□□□ 1.05
VPS9D1Q9Y2B5 TDRKH-206ENST00000440583 2296 ntTSL 5 BASIC21.59■■□□□ 1.05
VPS9D1Q9Y2B5 PLEKHA8-208ENST00000622102 2140 ntTSL 5 BASIC21.59■■□□□ 1.05
VPS9D1Q9Y2B5 CXCL14-201ENST00000337225 1971 ntAPPRIS P2 TSL 1 (best) BASIC21.59■■□□□ 1.05
VPS9D1Q9Y2B5 AQP6-201ENST00000315520 1398 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
VPS9D1Q9Y2B5 SKIDA1-201ENST00000444772 2667 ntAPPRIS ALT2 TSL 5 BASIC21.59■■□□□ 1.05
VPS9D1Q9Y2B5 XBP1-207ENST00000611155 1794 ntTSL 5 BASIC21.59■■□□□ 1.05
VPS9D1Q9Y2B5 MCMBP-202ENST00000369077 2465 ntAPPRIS ALT1 TSL 1 (best) BASIC21.58■■□□□ 1.05
VPS9D1Q9Y2B5 STK25-234ENST00000535007 2459 ntTSL 2 BASIC21.58■■□□□ 1.05
VPS9D1Q9Y2B5 C12orf75-208ENST00000612117 1329 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
VPS9D1Q9Y2B5 LSR-202ENST00000354900 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC21.58■■□□□ 1.05
VPS9D1Q9Y2B5 DBP-201ENST00000222122 2229 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
VPS9D1Q9Y2B5 HYI-204ENST00000372432 1066 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
VPS9D1Q9Y2B5 YJEFN3-201ENST00000436027 878 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
VPS9D1Q9Y2B5 AC010141.3-201ENST00000456659 717 ntBASIC21.58■■□□□ 1.05
VPS9D1Q9Y2B5 AC007448.3-201ENST00000585193 689 ntTSL 2 BASIC21.58■■□□□ 1.05
VPS9D1Q9Y2B5 USP21-202ENST00000368001 2095 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
VPS9D1Q9Y2B5 INPP1-201ENST00000322522 1919 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
VPS9D1Q9Y2B5 MAGI2-212ENST00000626691 4599 ntTSL 5 BASIC21.58■■□□□ 1.04
VPS9D1Q9Y2B5 PHACTR2-208ENST00000440869 2569 ntAPPRIS ALT2 TSL 2 BASIC21.58■■□□□ 1.04
VPS9D1Q9Y2B5 FDFT1-201ENST00000220584 2176 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
VPS9D1Q9Y2B5 NOX4-209ENST00000527626 1774 ntTSL 2 BASIC21.58■■□□□ 1.04
VPS9D1Q9Y2B5 TSKS-202ENST00000358830 1367 ntAPPRIS ALT2 TSL 1 (best) BASIC21.58■■□□□ 1.04
VPS9D1Q9Y2B5 RBM38-203ENST00000356208 2382 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
VPS9D1Q9Y2B5 MAIP1-201ENST00000295079 1495 ntAPPRIS P2 TSL 2 BASIC21.58■■□□□ 1.04
VPS9D1Q9Y2B5 EEFSEC-201ENST00000254730 2232 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
VPS9D1Q9Y2B5 HMGA2-205ENST00000425208 1444 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
VPS9D1Q9Y2B5 ANKHD1-204ENST00000394722 2035 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
VPS9D1Q9Y2B5 DYRK2-202ENST00000344096 8912 ntAPPRIS P4 TSL 1 (best) BASIC21.57■■□□□ 1.04
VPS9D1Q9Y2B5 RAB6A-204ENST00000536566 1267 ntTSL 5 BASIC21.57■■□□□ 1.04
VPS9D1Q9Y2B5 DECR2-201ENST00000219481 1615 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
VPS9D1Q9Y2B5 PLPP7-202ENST00000372264 2095 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
VPS9D1Q9Y2B5 C11orf63-201ENST00000227349 3147 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
VPS9D1Q9Y2B5 NRG3-201ENST00000372141 2158 ntAPPRIS P3 TSL 1 (best) BASIC21.57■■□□□ 1.04
VPS9D1Q9Y2B5 RDX-204ENST00000528498 2511 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
VPS9D1Q9Y2B5 LMLN-210ENST00000482695 2010 ntAPPRIS ALT2 TSL 1 (best) BASIC21.56■■□□□ 1.04
VPS9D1Q9Y2B5 PYGO2-201ENST00000368456 1306 ntTSL 2 BASIC21.56■■□□□ 1.04
VPS9D1Q9Y2B5 FAM120B-204ENST00000625626 1794 ntAPPRIS ALT2 TSL 2 BASIC21.56■■□□□ 1.04
VPS9D1Q9Y2B5 UCHL5-201ENST00000367448 1534 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
VPS9D1Q9Y2B5 BAZ1A-202ENST00000360310 6010 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
VPS9D1Q9Y2B5 CHODL-201ENST00000299295 2548 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
VPS9D1Q9Y2B5 FHL3-201ENST00000373016 1647 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
VPS9D1Q9Y2B5 DCTPP1-201ENST00000319285 1222 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
VPS9D1Q9Y2B5 LYPD2-201ENST00000359228 594 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
VPS9D1Q9Y2B5 SRM-201ENST00000376957 1266 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
VPS9D1Q9Y2B5 SMIM29-205ENST00000468145 903 ntTSL 2 BASIC21.56■■□□□ 1.04
VPS9D1Q9Y2B5 SMIM29-207ENST00000481533 1053 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
VPS9D1Q9Y2B5 TOLLIP-208ENST00000527938 549 ntTSL 4 BASIC21.56■■□□□ 1.04
VPS9D1Q9Y2B5 AP005435.1-201ENST00000529293 1178 ntBASIC21.56■■□□□ 1.04
VPS9D1Q9Y2B5 ST3GAL4-215ENST00000532243 1825 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
VPS9D1Q9Y2B5 AC009506.1-201ENST00000418474 1494 ntTSL 2 BASIC21.56■■□□□ 1.04
VPS9D1Q9Y2B5 LMF1-202ENST00000543238 2103 ntTSL 2 BASIC21.56■■□□□ 1.04
VPS9D1Q9Y2B5 AC093323.1-201ENST00000307533 2311 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
VPS9D1Q9Y2B5 IQCJ-SCHIP1-203ENST00000476809 1780 ntAPPRIS ALT2 TSL 5 BASIC21.56■■□□□ 1.04
VPS9D1Q9Y2B5 C6orf136-201ENST00000293604 1978 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
VPS9D1Q9Y2B5 ADCK2-203ENST00000476491 2092 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
VPS9D1Q9Y2B5 TRAM2-AS1-204ENST00000606714 2453 ntTSL 2 BASIC21.55■■□□□ 1.04
VPS9D1Q9Y2B5 BCL11B-203ENST00000443726 2599 ntAPPRIS ALT2 TSL 5 BASIC21.55■■□□□ 1.04
VPS9D1Q9Y2B5 HTATIP2-204ENST00000451739 1748 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
VPS9D1Q9Y2B5 LGALS9B-201ENST00000324290 1243 ntAPPRIS P2 TSL 5 BASIC21.55■■□□□ 1.04
VPS9D1Q9Y2B5 PYCARD-202ENST00000350605 696 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
VPS9D1Q9Y2B5 STOX1-202ENST00000399162 935 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
VPS9D1Q9Y2B5 STOX1-203ENST00000399165 1135 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
VPS9D1Q9Y2B5 PTMA-205ENST00000410064 814 ntTSL 2 BASIC21.55■■□□□ 1.04
VPS9D1Q9Y2B5 PLEKHJ1-213ENST00000591099 1092 ntTSL 2 BASIC21.55■■□□□ 1.04
VPS9D1Q9Y2B5 AC008406.3-201ENST00000620001 1374 ntBASIC21.55■■□□□ 1.04
VPS9D1Q9Y2B5 RNF39-202ENST00000376751 1970 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
VPS9D1Q9Y2B5 SNHG7-201ENST00000414282 2357 ntTSL 2 BASIC21.55■■□□□ 1.04
VPS9D1Q9Y2B5 BARX2-201ENST00000281437 1813 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
VPS9D1Q9Y2B5 UCHL5-205ENST00000367454 1815 ntAPPRIS ALT1 TSL 1 (best) BASIC21.55■■□□□ 1.04
VPS9D1Q9Y2B5 HOMER3-203ENST00000433218 1418 ntAPPRIS ALT1 TSL 5 BASIC21.55■■□□□ 1.04
Retrieved 100 of 98,524 protein–RNA pairs in 26.3 ms