Protein–RNA interactions for Protein: P78363

ABCA4, Retinal-specific ATP-binding cassette transporter, humanhuman

Predictions only

Length 2,273 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA4P78363 DUX4L16-201ENST00000555130 1264 ntBASIC18.79■□□□□ 0.6
ABCA4P78363 FAM185A-201ENST00000409231 1446 ntAPPRIS ALT2 TSL 2 BASIC18.78■□□□□ 0.6
ABCA4P78363 NPAS1-208ENST00000602212 2117 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
ABCA4P78363 PDIA2-201ENST00000219406 1698 ntAPPRIS P2 TSL 1 (best) BASIC18.78■□□□□ 0.6
ABCA4P78363 CYS1-201ENST00000381813 2738 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
ABCA4P78363 LY6E-202ENST00000429120 1173 ntAPPRIS P2 TSL 1 (best) BASIC18.78■□□□□ 0.6
ABCA4P78363 UXS1-201ENST00000283148 2099 ntAPPRIS ALT1 TSL 2 BASIC18.78■□□□□ 0.6
ABCA4P78363 UCHL5-204ENST00000367451 1346 ntTSL 5 BASIC18.78■□□□□ 0.6
ABCA4P78363 TAZ-205ENST00000475699 1862 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
ABCA4P78363 HRASLS-201ENST00000264735 1066 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
ABCA4P78363 PGPEP1L-201ENST00000378919 995 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
ABCA4P78363 SFTPC-205ENST00000521315 1046 ntAPPRIS ALT1 TSL 1 (best) BASIC18.77■□□□□ 0.6
ABCA4P78363 AL161421.1-201ENST00000619666 1101 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
ABCA4P78363 TMEM102-201ENST00000323206 1973 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
ABCA4P78363 TMEM102-202ENST00000396568 1962 ntAPPRIS P1 TSL 2 BASIC18.77■□□□□ 0.6
ABCA4P78363 AC096541.1-201ENST00000445070 1807 ntTSL 2 BASIC18.77■□□□□ 0.6
ABCA4P78363 SPDYE2-201ENST00000341656 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
ABCA4P78363 ARRDC1-AS1-201ENST00000371417 1409 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
ABCA4P78363 TTC39A-203ENST00000371747 1876 ntTSL 2 BASIC18.77■□□□□ 0.6
ABCA4P78363 ZNF292-204ENST00000392985 1096 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
ABCA4P78363 CT47A12-201ENST00000419982 1165 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
ABCA4P78363 SPDYE2B-202ENST00000455020 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
ABCA4P78363 HERC2P5-204ENST00000569697 1214 ntTSL 2 BASIC18.77■□□□□ 0.6
ABCA4P78363 AC068587.7-201ENST00000641602 218 ntBASIC18.77■□□□□ 0.6
ABCA4P78363 MBOAT7-201ENST00000245615 2529 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
ABCA4P78363 THAP4-204ENST00000407315 2367 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
ABCA4P78363 FAM120B-204ENST00000625626 1794 ntAPPRIS ALT2 TSL 2 BASIC18.77■□□□□ 0.59
ABCA4P78363 PRR7-201ENST00000323249 1480 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
ABCA4P78363 DENND2D-202ENST00000369752 1894 ntAPPRIS ALT2 TSL 2 BASIC18.77■□□□□ 0.59
ABCA4P78363 AL139125.2-201ENST00000623134 1869 ntBASIC18.77■□□□□ 0.59
ABCA4P78363 PREB-202ENST00000406567 1910 ntTSL 5 BASIC18.76■□□□□ 0.59
ABCA4P78363 CFD-201ENST00000327726 1201 ntAPPRIS P3 TSL 1 (best) BASIC18.76■□□□□ 0.59
ABCA4P78363 SNRNP25-202ENST00000383018 1085 ntAPPRIS P2 TSL 1 (best) BASIC18.76■□□□□ 0.59
ABCA4P78363 AL645608.9-201ENST00000442292 829 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
ABCA4P78363 APTR-205ENST00000447009 902 ntTSL 2 BASIC18.76■□□□□ 0.59
ABCA4P78363 AP006621.1-202ENST00000528982 464 ntTSL 2 BASIC18.76■□□□□ 0.59
ABCA4P78363 PON2-217ENST00000633192 1876 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
ABCA4P78363 SCAMP3-202ENST00000355379 1537 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
ABCA4P78363 CCDC47-204ENST00000582252 1719 ntTSL 2 BASIC18.76■□□□□ 0.59
ABCA4P78363 SIX3-201ENST00000260653 2523 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
ABCA4P78363 EPB41L4B-202ENST00000374566 5800 ntAPPRIS P4 TSL 1 (best) BASIC18.76■□□□□ 0.59
ABCA4P78363 KLF13-207ENST00000560473 489 ntTSL 3 BASIC18.76■□□□□ 0.59
ABCA4P78363 AC007216.1-201ENST00000570197 601 ntTSL 4 BASIC18.76■□□□□ 0.59
ABCA4P78363 ALKBH7-201ENST00000245812 1332 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
ABCA4P78363 RASSF5-202ENST00000579436 2064 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
ABCA4P78363 PRMT5-213ENST00000553897 1857 ntTSL 2 BASIC18.75■□□□□ 0.59
ABCA4P78363 C3orf18-205ENST00000441239 1490 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
ABCA4P78363 RAP1B-202ENST00000341355 714 ntAPPRIS P1 TSL 3 BASIC18.75■□□□□ 0.59
ABCA4P78363 FAM160B1-201ENST00000369246 666 ntTSL 2 BASIC18.75■□□□□ 0.59
ABCA4P78363 PIGP-203ENST00000399098 972 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
ABCA4P78363 SPI1-203ENST00000533030 661 ntTSL 2 BASIC18.75■□□□□ 0.59
ABCA4P78363 NPHS2-201ENST00000367615 1855 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
ABCA4P78363 PURG-202ENST00000475541 2875 ntAPPRIS P1 BASIC18.75■□□□□ 0.59
ABCA4P78363 ZFYVE28-202ENST00000503000 1874 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
ABCA4P78363 HSD11B2-201ENST00000326152 1900 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
ABCA4P78363 ZNRF1-201ENST00000320619 2479 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
ABCA4P78363 D2HGDH-203ENST00000403782 2208 ntTSL 2 BASIC18.75■□□□□ 0.59
ABCA4P78363 BID-202ENST00000342111 854 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
ABCA4P78363 VDAC1-203ENST00000395047 1873 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
ABCA4P78363 RAB28-203ENST00000338176 1787 ntTSL 3 BASIC18.74■□□□□ 0.59
ABCA4P78363 LARP6-202ENST00000344870 527 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
ABCA4P78363 AC008687.6-201ENST00000596318 630 ntBASIC18.74■□□□□ 0.59
ABCA4P78363 MDK-213ENST00000617138 635 ntTSL 2 BASIC18.74■□□□□ 0.59
ABCA4P78363 CPT2-209ENST00000636935 803 ntTSL 5 BASIC18.74■□□□□ 0.59
ABCA4P78363 MAP2K5-204ENST00000395476 1689 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
ABCA4P78363 DENND1B-204ENST00000367396 2177 ntAPPRIS P3 TSL 1 (best) BASIC18.74■□□□□ 0.59
ABCA4P78363 AGTR1-203ENST00000404754 2252 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
ABCA4P78363 DIXDC1-205ENST00000529225 1945 ntTSL 5 BASIC18.74■□□□□ 0.59
ABCA4P78363 MRPL37-201ENST00000336230 1179 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
ABCA4P78363 MDK-205ENST00000405308 1166 ntAPPRIS P2 TSL 2 BASIC18.74■□□□□ 0.59
ABCA4P78363 AF201337.1-201ENST00000520239 748 ntBASIC18.74■□□□□ 0.59
ABCA4P78363 SLCO3A1-201ENST00000318445 5115 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
ABCA4P78363 KRT87P-202ENST00000534226 1464 ntBASIC18.73■□□□□ 0.59
ABCA4P78363 AK8-201ENST00000298545 2072 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
ABCA4P78363 HSF1-201ENST00000400780 2105 ntTSL 5 BASIC18.73■□□□□ 0.59
ABCA4P78363 CYP2A13-201ENST00000330436 1739 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
ABCA4P78363 HAGH-203ENST00000455446 1276 ntTSL 2 BASIC18.73■□□□□ 0.59
ABCA4P78363 PIM3-201ENST00000360612 2369 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
ABCA4P78363 GIT1-210ENST00000579937 2798 ntTSL 2 BASIC18.73■□□□□ 0.59
ABCA4P78363 FOSL1-201ENST00000312562 1669 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
ABCA4P78363 AC005224.4-201ENST00000583262 1652 ntBASIC18.73■□□□□ 0.59
ABCA4P78363 CNTD2-202ENST00000430325 1817 ntAPPRIS P2 TSL 2 BASIC18.73■□□□□ 0.59
ABCA4P78363 C2orf72-201ENST00000373640 3657 ntAPPRIS P1 TSL 2 BASIC18.73■□□□□ 0.59
ABCA4P78363 AC108693.2-201ENST00000492981 303 ntTSL 3 BASIC18.72■□□□□ 0.59
ABCA4P78363 ITM2C-203ENST00000335005 1889 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
ABCA4P78363 ACTL10-201ENST00000330271 2028 ntAPPRIS P1 BASIC18.72■□□□□ 0.59
ABCA4P78363 FMR1-AS1-202ENST00000596112 1845 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
ABCA4P78363 DACT2-203ENST00000607983 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
ABCA4P78363 CNIH2-201ENST00000311445 1356 ntAPPRIS P2 TSL 1 (best) BASIC18.72■□□□□ 0.59
ABCA4P78363 CASP9-203ENST00000375890 1351 ntTSL 2 BASIC18.72■□□□□ 0.59
ABCA4P78363 CBR1-201ENST00000290349 1293 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
ABCA4P78363 AC073210.2-201ENST00000430369 194 ntBASIC18.72■□□□□ 0.59
ABCA4P78363 AC093627.4-202ENST00000479592 591 ntTSL 4 BASIC18.72■□□□□ 0.59
ABCA4P78363 AC104187.1-201ENST00000607510 612 ntBASIC18.72■□□□□ 0.59
ABCA4P78363 AL050303.2-201ENST00000619798 666 ntBASIC18.72■□□□□ 0.59
ABCA4P78363 SLC35A3-218ENST00000639994 1114 ntTSL 5 BASIC18.72■□□□□ 0.59
ABCA4P78363 TMEM185A-208ENST00000611119 2662 ntTSL 2 BASIC18.72■□□□□ 0.59
ABCA4P78363 ANO1-202ENST00000355303 4790 ntAPPRIS P2 TSL 1 (best) BASIC18.72■□□□□ 0.59
ABCA4P78363 SERBP1-202ENST00000370990 1621 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
ABCA4P78363 EPCAM-202ENST00000405271 1530 ntTSL 5 BASIC18.71■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 34.5 ms