Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 HOMER3-201ENST00000221222 1384 ntAPPRIS ALT1 TSL 5 BASIC20.2■□□□□ 0.82
ZNF540Q8NDQ6 PRRT4-207ENST00000535159 2897 ntAPPRIS P1 TSL 5 BASIC20.2■□□□□ 0.82
ZNF540Q8NDQ6 UHRF1BP1L-202ENST00000356828 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
ZNF540Q8NDQ6 VPS9D1-AS1-202ENST00000562866 1753 ntTSL 2 BASIC20.19■□□□□ 0.82
ZNF540Q8NDQ6 SYNGR2-201ENST00000225777 2325 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
ZNF540Q8NDQ6 HSPE1-201ENST00000233893 950 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
ZNF540Q8NDQ6 NAGPA-202ENST00000381955 2100 ntTSL 5 BASIC20.19■□□□□ 0.82
ZNF540Q8NDQ6 GUSBP5-201ENST00000418136 578 ntBASIC20.19■□□□□ 0.82
ZNF540Q8NDQ6 FAM136A-202ENST00000430566 885 ntTSL 3 BASIC20.19■□□□□ 0.82
ZNF540Q8NDQ6 CARMIL1-202ENST00000461945 1290 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
ZNF540Q8NDQ6 RNF146-205ENST00000477776 762 ntTSL 3 BASIC20.19■□□□□ 0.82
ZNF540Q8NDQ6 GPRC5B-202ENST00000535671 1215 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
ZNF540Q8NDQ6 AL591684.2-201ENST00000605970 1594 ntTSL 5 BASIC20.19■□□□□ 0.82
ZNF540Q8NDQ6 PKIG-206ENST00000372892 1338 ntAPPRIS P1 TSL 2 BASIC20.19■□□□□ 0.82
ZNF540Q8NDQ6 NMI-201ENST00000243346 1623 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
ZNF540Q8NDQ6 IGSF21-201ENST00000251296 1943 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
ZNF540Q8NDQ6 DISC1-212ENST00000535983 2505 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
ZNF540Q8NDQ6 PDIA2-201ENST00000219406 1698 ntAPPRIS P2 TSL 1 (best) BASIC20.19■□□□□ 0.82
ZNF540Q8NDQ6 GADD45GIP1-201ENST00000316939 1782 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
ZNF540Q8NDQ6 MAGIX-207ENST00000615915 1757 ntAPPRIS ALT2 TSL 2 BASIC20.18■□□□□ 0.82
ZNF540Q8NDQ6 FMR1-204ENST00000370471 4125 ntTSL 5 BASIC20.18■□□□□ 0.82
ZNF540Q8NDQ6 FBXO7-206ENST00000452138 1535 ntTSL 2 BASIC20.18■□□□□ 0.82
ZNF540Q8NDQ6 SPRED3-204ENST00000587013 1539 ntTSL 5 BASIC20.18■□□□□ 0.82
ZNF540Q8NDQ6 VSX1-205ENST00000429762 1977 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
ZNF540Q8NDQ6 TMC6-212ENST00000589553 2389 ntTSL 2 BASIC20.18■□□□□ 0.82
ZNF540Q8NDQ6 ANKHD1-205ENST00000394723 2135 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
ZNF540Q8NDQ6 FBXO27-202ENST00000509137 2130 ntAPPRIS P2 TSL 1 (best) BASIC20.18■□□□□ 0.82
ZNF540Q8NDQ6 DENND6A-201ENST00000311128 4655 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
ZNF540Q8NDQ6 RELA-201ENST00000308639 2681 ntAPPRIS ALT1 TSL 1 (best) BASIC20.18■□□□□ 0.82
ZNF540Q8NDQ6 MED25-211ENST00000617849 1548 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
ZNF540Q8NDQ6 DUSP5-201ENST00000369583 2557 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
ZNF540Q8NDQ6 SP9-201ENST00000394967 2554 ntAPPRIS P1 TSL 5 BASIC20.17■□□□□ 0.82
ZNF540Q8NDQ6 ZNF664-207ENST00000539644 5108 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
ZNF540Q8NDQ6 SLC22A23-205ENST00000436008 6641 ntAPPRIS ALT2 TSL 5 BASIC20.17■□□□□ 0.82
ZNF540Q8NDQ6 IQCJ-SCHIP1-203ENST00000476809 1780 ntAPPRIS ALT2 TSL 5 BASIC20.17■□□□□ 0.82
ZNF540Q8NDQ6 EVA1B-201ENST00000270824 1054 ntAPPRIS P1 TSL 2 BASIC20.17■□□□□ 0.82
ZNF540Q8NDQ6 CENPX-202ENST00000392359 805 ntAPPRIS P1 TSL 2 BASIC20.17■□□□□ 0.82
ZNF540Q8NDQ6 LAT-217ENST00000630764 610 ntAPPRIS ALT2 TSL 5 BASIC20.17■□□□□ 0.82
ZNF540Q8NDQ6 MAG-203ENST00000537831 2341 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
ZNF540Q8NDQ6 CIZ1-206ENST00000372954 2731 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
ZNF540Q8NDQ6 PABPC1L2B-201ENST00000373521 2197 ntAPPRIS P1 BASIC20.17■□□□□ 0.82
ZNF540Q8NDQ6 ZFYVE19-201ENST00000299173 1555 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
ZNF540Q8NDQ6 EED-201ENST00000263360 2223 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
ZNF540Q8NDQ6 LINC01123-202ENST00000419296 2436 ntTSL 2 BASIC20.16■□□□□ 0.82
ZNF540Q8NDQ6 DPH7-201ENST00000277540 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
ZNF540Q8NDQ6 GTPBP6-201ENST00000326153 1907 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
ZNF540Q8NDQ6 AL592295.1-201ENST00000400984 884 ntBASIC20.16■□□□□ 0.82
ZNF540Q8NDQ6 FBXW11-203ENST00000393802 2181 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
ZNF540Q8NDQ6 EEFSEC-201ENST00000254730 2232 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
ZNF540Q8NDQ6 DYRK3-202ENST00000367108 2218 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
ZNF540Q8NDQ6 FFAR1-201ENST00000246553 2311 ntAPPRIS P1 BASIC20.16■□□□□ 0.82
ZNF540Q8NDQ6 TRIB3-201ENST00000217233 2499 ntAPPRIS P3 TSL 1 (best) BASIC20.16■□□□□ 0.82
ZNF540Q8NDQ6 BOD1-202ENST00000311086 1562 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
ZNF540Q8NDQ6 LINC00092-201ENST00000412122 1726 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
ZNF540Q8NDQ6 SOBP-201ENST00000317357 5245 ntAPPRIS P1 TSL 5 BASIC20.15■□□□□ 0.82
ZNF540Q8NDQ6 COL15A1-201ENST00000375001 5496 ntAPPRIS P2 TSL 1 (best) BASIC20.15■□□□□ 0.82
ZNF540Q8NDQ6 MTURN-201ENST00000324453 5937 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
ZNF540Q8NDQ6 LAMC3-202ENST00000361069 6133 ntAPPRIS P1 TSL 2 BASIC20.15■□□□□ 0.82
ZNF540Q8NDQ6 C5orf38-202ENST00000397835 681 ntAPPRIS ALT2 TSL 5 BASIC20.15■□□□□ 0.82
ZNF540Q8NDQ6 STK32C-205ENST00000456004 607 ntTSL 2 BASIC20.15■□□□□ 0.82
ZNF540Q8NDQ6 LSM7-204ENST00000587502 575 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
ZNF540Q8NDQ6 MTERF3-204ENST00000523821 1529 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
ZNF540Q8NDQ6 AC131274.2-201ENST00000580697 1507 ntBASIC20.15■□□□□ 0.82
ZNF540Q8NDQ6 MFSD7-203ENST00000404286 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
ZNF540Q8NDQ6 FGFR1-241ENST00000619564 5482 ntTSL 5 BASIC20.15■□□□□ 0.82
ZNF540Q8NDQ6 PEX10-202ENST00000447513 1997 ntAPPRIS P2 TSL 1 (best) BASIC20.15■□□□□ 0.82
ZNF540Q8NDQ6 FAM99A-202ENST00000538190 1989 ntBASIC20.15■□□□□ 0.82
ZNF540Q8NDQ6 CERS5-201ENST00000317551 2051 ntAPPRIS P3 TSL 2 BASIC20.15■□□□□ 0.82
ZNF540Q8NDQ6 FAH-202ENST00000407106 2152 ntAPPRIS P1 TSL 5 BASIC20.15■□□□□ 0.82
ZNF540Q8NDQ6 ORAI3-201ENST00000318663 2206 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
ZNF540Q8NDQ6 PABPC1L2A-201ENST00000373519 2237 ntAPPRIS P1 BASIC20.15■□□□□ 0.82
ZNF540Q8NDQ6 SLC1A5-203ENST00000542575 2882 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
ZNF540Q8NDQ6 RPS6KL1-216ENST00000557413 2425 ntAPPRIS P1 TSL 5 BASIC20.14■□□□□ 0.82
ZNF540Q8NDQ6 SPIRE2-202ENST00000393062 2172 ntAPPRIS ALT2 TSL 1 (best) BASIC20.14■□□□□ 0.81
ZNF540Q8NDQ6 AL353803.4-201ENST00000565882 1934 ntBASIC20.14■□□□□ 0.81
ZNF540Q8NDQ6 ST3GAL4-202ENST00000356132 1745 ntTSL 5 BASIC20.14■□□□□ 0.81
ZNF540Q8NDQ6 SAMD8-202ENST00000372690 1654 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
ZNF540Q8NDQ6 HOMER3-205ENST00000542541 1607 ntAPPRIS P3 TSL 1 (best) BASIC20.14■□□□□ 0.81
ZNF540Q8NDQ6 CITED4-201ENST00000372638 1316 ntAPPRIS P1 BASIC20.14■□□□□ 0.81
ZNF540Q8NDQ6 SNAI3-AS1-203ENST00000565633 829 ntTSL 5 BASIC20.14■□□□□ 0.81
ZNF540Q8NDQ6 CDC42BPB-201ENST00000361246 6758 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
ZNF540Q8NDQ6 RARA-201ENST00000254066 2414 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
ZNF540Q8NDQ6 LPCAT4-201ENST00000314891 2262 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
ZNF540Q8NDQ6 AC073130.3-201ENST00000624389 2278 ntBASIC20.14■□□□□ 0.81
ZNF540Q8NDQ6 UBA5-211ENST00000493720 2058 ntTSL 5 BASIC20.14■□□□□ 0.81
ZNF540Q8NDQ6 BX088645.1-201ENST00000636699 1728 ntAPPRIS P1 TSL 5 BASIC20.13■□□□□ 0.81
ZNF540Q8NDQ6 C7orf25-203ENST00000431882 1645 ntTSL 2 BASIC20.13■□□□□ 0.81
ZNF540Q8NDQ6 IRF3-227ENST00000600911 1637 ntTSL 5 BASIC20.13■□□□□ 0.81
ZNF540Q8NDQ6 TMUB1-203ENST00000462940 1549 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
ZNF540Q8NDQ6 CERKL-205ENST00000409440 2425 ntTSL 2 BASIC20.13■□□□□ 0.81
ZNF540Q8NDQ6 MED22-201ENST00000343730 1437 ntAPPRIS P4 TSL 1 (best) BASIC20.13■□□□□ 0.81
ZNF540Q8NDQ6 NUTF2-201ENST00000219169 2321 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
ZNF540Q8NDQ6 SMOX-212ENST00000621355 2322 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
ZNF540Q8NDQ6 CAMK2N2-201ENST00000296238 1362 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
ZNF540Q8NDQ6 KISS1-201ENST00000367194 709 ntAPPRIS P2 TSL 1 (best) BASIC20.13■□□□□ 0.81
ZNF540Q8NDQ6 OSCAR-206ENST00000391760 629 ntTSL 2 BASIC20.13■□□□□ 0.81
ZNF540Q8NDQ6 AC239859.2-201ENST00000444165 318 ntBASIC20.13■□□□□ 0.81
ZNF540Q8NDQ6 KRT125P-201ENST00000546827 989 ntBASIC20.13■□□□□ 0.81
ZNF540Q8NDQ6 PMS1-222ENST00000639501 2506 ntTSL 5 BASIC20.13■□□□□ 0.81
ZNF540Q8NDQ6 CPEB1-218ENST00000620182 2422 ntTSL 2 BASIC20.13■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 25.4 ms