RNA–Protein interactions for RNA: ENST00000308639.13

RELA-201, Transcript of RELA proto-oncogene, NF-kB subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene RELA, Length 2,681 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RELA-201ENST00000308639 NISCHQ9Y2I1 1504 aa43.03■■■■■ 4.48
RELA-201ENST00000308639 SHROOM4Q9ULL8 1493 aa37.12■■■■□ 3.53
RELA-201ENST00000308639 ZCCHC6Q5VYS8 1495 aaKnown RBP36.39■■■■□ 3.42
RELA-201ENST00000308639 SUPT5HO00267 1087 aaKnown RBP36.39■■■■□ 3.42
RELA-201ENST00000308639 CCDC180Q9P1Z9 1646 aa36.38■■■■□ 3.41
RELA-201ENST00000308639 DCAF8L2P0C7V8 631 aa36.03■■■■□ 3.36
RELA-201ENST00000308639 CHIC1Q5VXU3 224 aa35.28■■■■□ 3.24
RELA-201ENST00000308639 MYO15BQ96JP2 1530 aa35.26■■■■□ 3.23
RELA-201ENST00000308639 DCAF1Q9Y4B6 1507 aa35.1■■■■□ 3.21
RELA-201ENST00000308639 SCRIBQ14160 1630 aa34.42■■■■□ 3.1
RELA-201ENST00000308639 LOC105371045A0A1W2PR82 267 aa34.4■■■■□ 3.1
RELA-201ENST00000308639 PCGF6Q9BYE7 350 aa34.37■■■■□ 3.09
RELA-201ENST00000308639 ABCC9O60706 1549 aa34.35■■■■□ 3.09
RELA-201ENST00000308639 HRCP23327 699 aa34.27■■■■□ 3.08
RELA-201ENST00000308639 RSF1Q96T23 1441 aaPredicted RBP34.15■■■■□ 3.06
RELA-201ENST00000308639 RB1CC1Q8TDY2 1594 aa33.88■■■■□ 3.01
RELA-201ENST00000308639 PPARGC1BQ86YN6 1023 aaKnown RBP33.83■■■■□ 3.01
RELA-201ENST00000308639 TRIM41Q8WV44 630 aa33.74■■■□□ 2.99
RELA-201ENST00000308639 CECR2Q9BXF3 1484 aa33.74■■■□□ 2.99
RELA-201ENST00000308639 FAM9AQ8IZU1 332 aaPredicted RBP33.69■■■□□ 2.98
RELA-201ENST00000308639 NACADO15069 1562 aa33.65■■■□□ 2.98
RELA-201ENST00000308639 EHMT2Q96KQ7 1210 aa33.57■■■□□ 2.97
RELA-201ENST00000308639 MROH2BQ7Z745 1585 aa33.57■■■□□ 2.96
RELA-201ENST00000308639 TRIM26Q12899 539 aaPredicted RBP33.5■■■□□ 2.95
RELA-201ENST00000308639 WIZO95785 1651 aa33.42■■■□□ 2.94
RELA-201ENST00000308639 BAZ1AQ9NRL2 1556 aaPredicted RBP33.06■■■□□ 2.88
RELA-201ENST00000308639 EIF4G1Q04637 1599 aaKnown RBP32.87■■■□□ 2.85
RELA-201ENST00000308639 UNC13AQ9UPW8 1703 aa32.79■■■□□ 2.84
RELA-201ENST00000308639 ABCC8Q09428 1581 aa32.77■■■□□ 2.84
RELA-201ENST00000308639 SMARCA4P51532 1647 aa32.76■■■□□ 2.83
RELA-201ENST00000308639 TOP2AP11388 1531 aaKnown RBP32.73■■■□□ 2.83
RELA-201ENST00000308639 CCDC88BA6NC98 1476 aa32.71■■■□□ 2.83
RELA-201ENST00000308639 PABPN1Q86U42 306 aaKnown RBP eCLIP32.64■■■□□ 2.824e-10■□□□□ 10.7
RELA-201ENST00000308639 ZEB1P37275 1124 aaPredicted RBP32.64■■■□□ 2.81
RELA-201ENST00000308639 SMARCA2P51531 1590 aa32.63■■■□□ 2.81
RELA-201ENST00000308639 TTBK1Q5TCY1 1321 aaPredicted RBP32.47■■■□□ 2.79
RELA-201ENST00000308639 SOGA1O94964 1423 aa32.46■■■□□ 2.79
RELA-201ENST00000308639 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP32.37■■■□□ 2.77
RELA-201ENST00000308639 BICRAQ9NZM4 1560 aa32.36■■■□□ 2.77
RELA-201ENST00000308639 RUSC2Q8N2Y8 1516 aa32.35■■■□□ 2.77
RELA-201ENST00000308639 PELP1Q8IZL8 1130 aaKnown RBP32.32■■■□□ 2.76
RELA-201ENST00000308639 CEP162Q5TB80 1403 aa32.26■■■□□ 2.76
RELA-201ENST00000308639 CSRNP3Q8WYN3 585 aa32.19■■■□□ 2.74
RELA-201ENST00000308639 CCER1Q8TC90 406 aaPredicted RBP32.18■■■□□ 2.74
RELA-201ENST00000308639 UBTFP17480 764 aaKnown RBP32.18■■■□□ 2.74
RELA-201ENST00000308639 TNIKQ9UKE5 1360 aa32.1■■■□□ 2.73
RELA-201ENST00000308639 WRNQ14191 1432 aaPredicted RBP eCLIP32.09■■■□□ 2.73
RELA-201ENST00000308639 PEG3Q9GZU2 1588 aa31.99■■■□□ 2.71
RELA-201ENST00000308639 EEA1Q15075 1411 aa31.99■■■□□ 2.71
RELA-201ENST00000308639 SYNJ1O43426 1573 aa31.96■■■□□ 2.71
RELA-201ENST00000308639 ATAD2BQ9ULI0 1458 aa31.93■■■□□ 2.7
RELA-201ENST00000308639 GOLGA3Q08378 1498 aa31.92■■■□□ 2.7
RELA-201ENST00000308639 BAZ1BQ9UIG0 1483 aaKnown RBP31.85■■■□□ 2.69
RELA-201ENST00000308639 RANGAP1P46060 587 aaPredicted RBP31.76■■■□□ 2.67
RELA-201ENST00000308639 SCAF1Q9H7N4 1312 aaKnown RBP31.73■■■□□ 2.67
RELA-201ENST00000308639 CEP164Q9UPV0 1460 aa31.71■■■□□ 2.67
RELA-201ENST00000308639 CLIP1P30622 1438 aa31.64■■■□□ 2.65
RELA-201ENST00000308639 KIF21BO75037 1637 aa31.63■■■□□ 2.65
RELA-201ENST00000308639 RAPGEF2Q9Y4G8 1499 aa31.62■■■□□ 2.65
RELA-201ENST00000308639 HNRNPUL2Q1KMD3 747 aaKnown RBP31.59■■■□□ 2.65
RELA-201ENST00000308639 DIEXFQ68CQ4 756 aaKnown RBP31.55■■■□□ 2.64
RELA-201ENST00000308639 VPS8Q8N3P4 1428 aa31.45■■■□□ 2.63
RELA-201ENST00000308639 TOP2BQ02880 1626 aa31.44■■■□□ 2.62
RELA-201ENST00000308639 NEUROD1Q13562 356 aa31.38■■■□□ 2.61
RELA-201ENST00000308639 APLP2Q06481 763 aa31.36■■■□□ 2.61
RELA-201ENST00000308639 ACIN1Q9UKV3 1341 aaKnown RBP31.3■■■□□ 2.6
RELA-201ENST00000308639 BIVM-ERCC5R4GMW8 1640 aa31.29■■■□□ 2.6
RELA-201ENST00000308639 ZNF316A6NFI3 1004 aaPredicted RBP31.25■■■□□ 2.59
RELA-201ENST00000308639 CUX1P39880 1505 aa31.22■■■□□ 2.59
RELA-201ENST00000308639 NCAPD3P42695 1498 aa31.2■■■□□ 2.59
RELA-201ENST00000308639 MYT1Q01538 1121 aa31.2■■■□□ 2.58
RELA-201ENST00000308639 PRXQ9BXM0 1461 aa31.18■■■□□ 2.58
RELA-201ENST00000308639 HMGXB3Q12766 1538 aa31.15■■■□□ 2.58
RELA-201ENST00000308639 ARAP1Q96P48 1450 aa31.13■■■□□ 2.57
RELA-201ENST00000308639 KANK4Q5T7N3 995 aaPredicted RBP31.11■■■□□ 2.57
RELA-201ENST00000308639 ERICH3Q5RHP9 1530 aa31.09■■■□□ 2.57
RELA-201ENST00000308639 GTF3C3Q9Y5Q9 886 aa31.03■■■□□ 2.56
RELA-201ENST00000308639 KIF27Q86VH2 1401 aa31.02■■■□□ 2.56
RELA-201ENST00000308639 CFTRP13569 1480 aa31.02■■■□□ 2.56
RELA-201ENST00000308639 CENPBP07199 599 aaPredicted RBP31.01■■■□□ 2.56
RELA-201ENST00000308639 YTHDC1Q96MU7 727 aaKnown RBP31.01■■■□□ 2.55
RELA-201ENST00000308639 MIER1Q8N108 512 aa30.94■■■□□ 2.54
RELA-201ENST00000308639 ARHGAP35Q9NRY4 1499 aa30.84■■■□□ 2.53
RELA-201ENST00000308639 DHX57Q6P158 1386 aaKnown RBP30.82■■■□□ 2.52
RELA-201ENST00000308639 CUX2O14529 1486 aa30.81■■■□□ 2.52
RELA-201ENST00000308639 ITGAEP38570 1179 aa30.79■■■□□ 2.52
RELA-201ENST00000308639 IGF1RP08069 1367 aa30.74■■■□□ 2.51
RELA-201ENST00000308639 RRBP1Q9P2E9 1410 aaKnown RBP30.7■■■□□ 2.5
RELA-201ENST00000308639 CADPSQ9ULU8 1353 aa30.69■■■□□ 2.5
RELA-201ENST00000308639 PRDM2Q13029 1718 aa30.67■■■□□ 2.5
RELA-201ENST00000308639 FGD5Q6ZNL6 1462 aa30.66■■■□□ 2.5
RELA-201ENST00000308639 CCNB3Q8WWL7 1395 aa30.64■■■□□ 2.5
RELA-201ENST00000308639 CARMIL1Q5VZK9 1371 aa30.61■■■□□ 2.49
RELA-201ENST00000308639 P3H3Q8IVL6 736 aa30.58■■■□□ 2.49
RELA-201ENST00000308639 CLSPNQ9HAW4 1339 aa30.56■■■□□ 2.48
RELA-201ENST00000308639 CC2D2AQ9P2K1 1620 aa30.5■■■□□ 2.47
RELA-201ENST00000308639 ATP1B4Q9UN42 357 aaPredicted RBP30.48■■■□□ 2.47
RELA-201ENST00000308639 TIAM1Q13009 1591 aa30.46■■■□□ 2.47
RELA-201ENST00000308639 FANCD2Q9BXW9 1451 aa30.44■■■□□ 2.46
RELA-201ENST00000308639 RAD54L2Q9Y4B4 1467 aa30.44■■■□□ 2.46
Retrieved 100 of 20,778 RNA–protein pairs in 50.8 ms