Protein–RNA interactions for Protein: Q8N9Z2

CCDC71L, Coiled-coil domain-containing protein 71L, humanhuman

Predictions only

Length 235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC71LQ8N9Z2 BRPF3-202ENST00000357641 6052 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
CCDC71LQ8N9Z2 TMEM25-205ENST00000411589 2442 ntAPPRIS ALT2 TSL 2 BASIC18.2■□□□□ 0.5
CCDC71LQ8N9Z2 PHKA1-204ENST00000373545 6173 ntTSL 5 BASIC18.2■□□□□ 0.5
CCDC71LQ8N9Z2 XBP1-201ENST00000216037 1850 ntAPPRIS P2 TSL 1 (best) BASIC18.2■□□□□ 0.5
CCDC71LQ8N9Z2 CITED4-201ENST00000372638 1316 ntAPPRIS P1 BASIC18.2■□□□□ 0.5
CCDC71LQ8N9Z2 LRRC45-201ENST00000306688 2701 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
CCDC71LQ8N9Z2 UBE2J2-201ENST00000347370 2387 ntTSL 3 BASIC18.19■□□□□ 0.5
CCDC71LQ8N9Z2 FBXO25-203ENST00000352684 2360 ntTSL 5 BASIC18.19■□□□□ 0.5
CCDC71LQ8N9Z2 GLT8D2-205ENST00000548660 1835 ntAPPRIS P1 TSL 2 BASIC18.19■□□□□ 0.5
CCDC71LQ8N9Z2 PHF7-201ENST00000327906 2130 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
CCDC71LQ8N9Z2 MT2A-201ENST00000245185 786 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
CCDC71LQ8N9Z2 FBXW11-203ENST00000393802 2181 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
CCDC71LQ8N9Z2 IFI30-201ENST00000407280 1134 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
CCDC71LQ8N9Z2 HCG18-235ENST00000426882 4862 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
CCDC71LQ8N9Z2 MIR4281-201ENST00000580852 62 ntBASIC18.19■□□□□ 0.5
CCDC71LQ8N9Z2 THA1P-201ENST00000590384 1145 ntBASIC18.19■□□□□ 0.5
CCDC71LQ8N9Z2 MMEL1-206ENST00000502556 1943 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
CCDC71LQ8N9Z2 RAP1B-207ENST00000450214 1466 ntTSL 2 BASIC18.19■□□□□ 0.5
CCDC71LQ8N9Z2 FMR1-204ENST00000370471 4125 ntTSL 5 BASIC18.19■□□□□ 0.5
CCDC71LQ8N9Z2 TMEM9B-201ENST00000309134 1659 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
CCDC71LQ8N9Z2 C7orf25-201ENST00000350427 2451 ntAPPRIS P1 TSL 2 BASIC18.18■□□□□ 0.5
CCDC71LQ8N9Z2 KIAA0895-204ENST00000415803 2865 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
CCDC71LQ8N9Z2 LRRC34-201ENST00000446859 1718 ntAPPRIS ALT2 TSL 2 BASIC18.18■□□□□ 0.5
CCDC71LQ8N9Z2 HOOK1-201ENST00000371208 5857 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
CCDC71LQ8N9Z2 PLPP7-202ENST00000372264 2095 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
CCDC71LQ8N9Z2 AC080112.2-201ENST00000578774 2094 ntTSL 4 BASIC18.18■□□□□ 0.5
CCDC71LQ8N9Z2 IGSF21-201ENST00000251296 1943 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
CCDC71LQ8N9Z2 MTERF3-201ENST00000287025 1409 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
CCDC71LQ8N9Z2 SSX2IP-209ENST00000603677 1149 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
CCDC71LQ8N9Z2 LY6K-201ENST00000292430 2671 ntAPPRIS P3 TSL 1 (best) BASIC18.18■□□□□ 0.5
CCDC71LQ8N9Z2 ANAPC4-201ENST00000315368 2685 ntAPPRIS P3 TSL 1 (best) BASIC18.18■□□□□ 0.5
CCDC71LQ8N9Z2 AC243965.2-201ENST00000612576 2671 ntTSL 5 BASIC18.18■□□□□ 0.5
CCDC71LQ8N9Z2 CCNG2-204ENST00000502280 1459 ntAPPRIS P1 TSL 2 BASIC18.18■□□□□ 0.5
CCDC71LQ8N9Z2 ACVR1C-201ENST00000243349 8994 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
CCDC71LQ8N9Z2 EFHD1-201ENST00000264059 2259 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
CCDC71LQ8N9Z2 MARK1-203ENST00000402574 5273 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
CCDC71LQ8N9Z2 UPF1-201ENST00000262803 5348 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
CCDC71LQ8N9Z2 UBFD1-208ENST00000567264 642 ntAPPRIS ALT2 TSL 5 BASIC18.17■□□□□ 0.5
CCDC71LQ8N9Z2 H2AFB1-201ENST00000620016 587 ntAPPRIS P1 BASIC18.17■□□□□ 0.5
CCDC71LQ8N9Z2 PLEKHO1-201ENST00000369124 2050 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
CCDC71LQ8N9Z2 CCDC85B-201ENST00000312579 1524 ntAPPRIS P1 BASIC18.17■□□□□ 0.5
CCDC71LQ8N9Z2 ARHGEF25-201ENST00000286494 2552 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
CCDC71LQ8N9Z2 DHRS11-215ENST00000618403 1598 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
CCDC71LQ8N9Z2 RAVER2-201ENST00000294428 4398 ntAPPRIS ALT2 TSL 5 BASIC18.16■□□□□ 0.5
CCDC71LQ8N9Z2 STK19-201ENST00000375331 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
CCDC71LQ8N9Z2 PRELID1-201ENST00000303204 1261 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
CCDC71LQ8N9Z2 KRT18P24-201ENST00000344739 1156 ntBASIC18.16■□□□□ 0.5
CCDC71LQ8N9Z2 C5orf38-202ENST00000397835 681 ntAPPRIS ALT2 TSL 5 BASIC18.16■□□□□ 0.5
CCDC71LQ8N9Z2 GUCD1-207ENST00000447813 895 ntTSL 3 BASIC18.16■□□□□ 0.5
CCDC71LQ8N9Z2 MBP-237ENST00000579129 1052 ntTSL 5 BASIC18.16■□□□□ 0.5
CCDC71LQ8N9Z2 FAM99A-202ENST00000538190 1989 ntBASIC18.16■□□□□ 0.5
CCDC71LQ8N9Z2 AC138028.2-201ENST00000440406 1539 ntTSL 2 BASIC18.16■□□□□ 0.5
CCDC71LQ8N9Z2 PIKFYVE-203ENST00000392202 2039 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
CCDC71LQ8N9Z2 SMOX-212ENST00000621355 2322 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
CCDC71LQ8N9Z2 MESP1-201ENST00000300057 2369 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
CCDC71LQ8N9Z2 RBM38-203ENST00000356208 2382 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
CCDC71LQ8N9Z2 GSN-204ENST00000373818 2657 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
CCDC71LQ8N9Z2 ZC3H14-223ENST00000557607 1983 ntTSL 5 BASIC18.15■□□□□ 0.5
CCDC71LQ8N9Z2 PHACTR3-202ENST00000359926 2252 ntTSL 2 BASIC18.15■□□□□ 0.5
CCDC71LQ8N9Z2 GPSM1-206ENST00000616132 2270 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
CCDC71LQ8N9Z2 XYLT1-201ENST00000261381 9891 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
CCDC71LQ8N9Z2 AC026310.3-201ENST00000625186 2373 ntBASIC18.15■□□□□ 0.5
CCDC71LQ8N9Z2 TRADD-202ENST00000486556 1833 ntTSL 2 BASIC18.15■□□□□ 0.5
CCDC71LQ8N9Z2 PSMG4-207ENST00000451246 824 ntTSL 3 BASIC18.15■□□□□ 0.5
CCDC71LQ8N9Z2 TMEM170A-206ENST00000569276 609 ntTSL 2 BASIC18.15■□□□□ 0.5
CCDC71LQ8N9Z2 AC133065.2-201ENST00000573379 2147 ntTSL 2 BASIC18.15■□□□□ 0.5
CCDC71LQ8N9Z2 NDEL1-219ENST00000585098 454 ntTSL 3 BASIC18.15■□□□□ 0.5
CCDC71LQ8N9Z2 CPEB1-218ENST00000620182 2422 ntTSL 2 BASIC18.15■□□□□ 0.5
CCDC71LQ8N9Z2 TARBP2-201ENST00000266987 1867 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
CCDC71LQ8N9Z2 FBXL19-205ENST00000562319 2462 ntAPPRIS ALT2 TSL 2 BASIC18.15■□□□□ 0.5
CCDC71LQ8N9Z2 ODF3L2-201ENST00000315489 1604 ntAPPRIS P2 TSL 1 (best) BASIC18.15■□□□□ 0.5
CCDC71LQ8N9Z2 SLC25A5-AS1-202ENST00000445759 1616 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
CCDC71LQ8N9Z2 AC010542.4-201ENST00000563151 1910 ntBASIC18.15■□□□□ 0.5
CCDC71LQ8N9Z2 COMMD5-201ENST00000305103 1373 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
CCDC71LQ8N9Z2 REST-206ENST00000612429 1376 ntTSL 5 BASIC18.15■□□□□ 0.5
CCDC71LQ8N9Z2 REST-207ENST00000616975 1370 ntTSL 5 BASIC18.15■□□□□ 0.5
CCDC71LQ8N9Z2 REST-212ENST00000640343 1352 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
CCDC71LQ8N9Z2 MYH14-206ENST00000596571 5988 ntAPPRIS ALT2 TSL 5 BASIC18.15■□□□□ 0.5
CCDC71LQ8N9Z2 NAGPA-202ENST00000381955 2100 ntTSL 5 BASIC18.14■□□□□ 0.5
CCDC71LQ8N9Z2 FBXO27-202ENST00000509137 2130 ntAPPRIS P2 TSL 1 (best) BASIC18.14■□□□□ 0.5
CCDC71LQ8N9Z2 BRSK2-212ENST00000531197 3163 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
CCDC71LQ8N9Z2 OAF-201ENST00000328965 2525 ntAPPRIS P2 TSL 1 (best) BASIC18.14■□□□□ 0.49
CCDC71LQ8N9Z2 KCNN4-201ENST00000262888 2240 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
CCDC71LQ8N9Z2 PACRGL-201ENST00000295290 1937 ntTSL 5 BASIC18.14■□□□□ 0.49
CCDC71LQ8N9Z2 GTPBP6-201ENST00000326153 1907 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
CCDC71LQ8N9Z2 RSPO1-201ENST00000356545 2621 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
CCDC71LQ8N9Z2 SPN-202ENST00000395389 1935 ntAPPRIS P2 TSL 1 (best) BASIC18.14■□□□□ 0.49
CCDC71LQ8N9Z2 CLIC3-203ENST00000494426 1017 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
CCDC71LQ8N9Z2 SEC11C-204ENST00000587834 1202 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
CCDC71LQ8N9Z2 U85056.1-201ENST00000616429 682 ntBASIC18.14■□□□□ 0.49
CCDC71LQ8N9Z2 LINC01529-204ENST00000636474 1715 ntBASIC18.14■□□□□ 0.49
CCDC71LQ8N9Z2 EIF2B4-211ENST00000616081 1754 ntTSL 5 BASIC18.14■□□□□ 0.49
CCDC71LQ8N9Z2 LINC01960-201ENST00000563759 1884 ntBASIC18.14■□□□□ 0.49
CCDC71LQ8N9Z2 KREMEN2-203ENST00000571007 1877 ntTSL 2 BASIC18.14■□□□□ 0.49
CCDC71LQ8N9Z2 IRF3-207ENST00000593922 1494 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
CCDC71LQ8N9Z2 SELENOO-201ENST00000380903 2315 ntAPPRIS P2 TSL 1 (best) BASIC18.14■□□□□ 0.49
CCDC71LQ8N9Z2 SELENOO-203ENST00000611222 2311 ntAPPRIS ALT2 TSL 5 BASIC18.14■□□□□ 0.49
CCDC71LQ8N9Z2 LOXL1-AS1-210ENST00000567257 2358 ntTSL 2 BASIC18.13■□□□□ 0.49
CCDC71LQ8N9Z2 HSF4-225ENST00000584272 1549 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
CCDC71LQ8N9Z2 PTPN18-202ENST00000347849 2472 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 28.5 ms