Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 AC026310.3-201ENST00000625186 2373 ntBASIC20.27■□□□□ 0.83
ZNF540Q8NDQ6 PPP3CC-201ENST00000240139 2189 ntAPPRIS P3 TSL 1 (best) BASIC20.27■□□□□ 0.83
ZNF540Q8NDQ6 SRPK3-202ENST00000370101 1958 ntAPPRIS P3 TSL 1 (best) BASIC20.26■□□□□ 0.83
ZNF540Q8NDQ6 CRHR1-202ENST00000314537 2535 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
ZNF540Q8NDQ6 GJD4-201ENST00000321660 1580 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
ZNF540Q8NDQ6 ZXDC-201ENST00000336332 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
ZNF540Q8NDQ6 METTL9-202ENST00000396014 1817 ntAPPRIS ALT1 TSL 1 (best) BASIC20.26■□□□□ 0.83
ZNF540Q8NDQ6 AC079630.1-202ENST00000618127 1840 ntBASIC20.26■□□□□ 0.83
ZNF540Q8NDQ6 CTAG1B-201ENST00000328435 748 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
ZNF540Q8NDQ6 LONRF2P2-201ENST00000439212 571 ntBASIC20.26■□□□□ 0.83
ZNF540Q8NDQ6 AC103724.3-201ENST00000564481 992 ntBASIC20.26■□□□□ 0.83
ZNF540Q8NDQ6 EME2-205ENST00000568449 1234 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
ZNF540Q8NDQ6 FXYD7-204ENST00000588265 636 ntTSL 2 BASIC20.26■□□□□ 0.83
ZNF540Q8NDQ6 CTAG1A-202ENST00000599837 748 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
ZNF540Q8NDQ6 DUX4-203ENST00000565211 1710 ntAPPRIS P2 TSL 1 (best) BASIC20.26■□□□□ 0.83
ZNF540Q8NDQ6 OLFM1-204ENST00000371793 2444 ntAPPRIS P1 TSL 3 BASIC20.26■□□□□ 0.83
ZNF540Q8NDQ6 TRIM3-202ENST00000359518 3042 ntAPPRIS P1 TSL 5 BASIC20.26■□□□□ 0.83
ZNF540Q8NDQ6 PLEKHA8-203ENST00000396259 2840 ntTSL 2 BASIC20.26■□□□□ 0.83
ZNF540Q8NDQ6 FADS6-204ENST00000614223 2044 ntAPPRIS ALT2 TSL 5 BASIC20.26■□□□□ 0.83
ZNF540Q8NDQ6 DISC1-220ENST00000602873 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
ZNF540Q8NDQ6 CAMK1-201ENST00000256460 1488 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
ZNF540Q8NDQ6 CDKN1C-202ENST00000414822 2051 ntAPPRIS P3 TSL 1 (best) BASIC20.25■□□□□ 0.83
ZNF540Q8NDQ6 AC080038.3-201ENST00000623346 1952 ntBASIC20.25■□□□□ 0.83
ZNF540Q8NDQ6 AL590094.1-201ENST00000635581 706 ntTSL 2 BASIC20.25■□□□□ 0.83
ZNF540Q8NDQ6 AC064853.4-201ENST00000641394 363 ntAPPRIS P1 BASIC20.25■□□□□ 0.83
ZNF540Q8NDQ6 PHACTR3-202ENST00000359926 2252 ntTSL 2 BASIC20.25■□□□□ 0.83
ZNF540Q8NDQ6 LPAR1-201ENST00000358883 2687 ntAPPRIS P2 TSL 2 BASIC20.25■□□□□ 0.83
ZNF540Q8NDQ6 MESP1-201ENST00000300057 2369 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
ZNF540Q8NDQ6 PAQR6-202ENST00000335852 2117 ntTSL 2 BASIC20.24■□□□□ 0.83
ZNF540Q8NDQ6 TCP1-202ENST00000392168 1878 ntTSL 5 BASIC20.24■□□□□ 0.83
ZNF540Q8NDQ6 AP004608.1-202ENST00000533390 1863 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
ZNF540Q8NDQ6 COMT-202ENST00000361682 2437 ntAPPRIS P3 TSL 1 (best) BASIC20.24■□□□□ 0.83
ZNF540Q8NDQ6 FBXW7-202ENST00000281708 4976 ntAPPRIS P4 TSL 1 (best) BASIC20.24■□□□□ 0.83
ZNF540Q8NDQ6 ARFGAP3-201ENST00000263245 2857 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
ZNF540Q8NDQ6 PNMT-201ENST00000269582 1253 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
ZNF540Q8NDQ6 IGFBP6-201ENST00000301464 1169 ntAPPRIS P2 TSL 1 (best) BASIC20.24■□□□□ 0.83
ZNF540Q8NDQ6 CT47A7-201ENST00000434883 1288 ntAPPRIS P1 TSL 2 BASIC20.24■□□□□ 0.83
ZNF540Q8NDQ6 EPM2A-202ENST00000435470 1278 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
ZNF540Q8NDQ6 FAM120C-203ENST00000477084 1140 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
ZNF540Q8NDQ6 ZDHHC8P1-201ENST00000255890 2382 ntTSL 2 BASIC20.24■□□□□ 0.83
ZNF540Q8NDQ6 ZYG11B-202ENST00000545132 2294 ntTSL 2 BASIC20.24■□□□□ 0.83
ZNF540Q8NDQ6 DAPK3-202ENST00000545797 2257 ntAPPRIS P1 TSL 2 BASIC20.24■□□□□ 0.83
ZNF540Q8NDQ6 PALM-208ENST00000592155 2272 ntTSL 4 BASIC20.24■□□□□ 0.83
ZNF540Q8NDQ6 CCSAP-203ENST00000366687 5089 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
ZNF540Q8NDQ6 MAST2-201ENST00000361297 5738 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
ZNF540Q8NDQ6 APPL2-201ENST00000258530 3239 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
ZNF540Q8NDQ6 EML2-201ENST00000245925 2264 ntAPPRIS P3 TSL 1 (best) BASIC20.23■□□□□ 0.83
ZNF540Q8NDQ6 ARHGEF25-201ENST00000286494 2552 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
ZNF540Q8NDQ6 IGFBP3-202ENST00000381083 1050 ntAPPRIS ALT1 TSL 5 BASIC20.23■□□□□ 0.83
ZNF540Q8NDQ6 TIE1-210ENST00000538015 1140 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
ZNF540Q8NDQ6 PRTG-204ENST00000561292 833 ntTSL 3 BASIC20.23■□□□□ 0.83
ZNF540Q8NDQ6 SSSCA1-AS1-201ENST00000567594 614 ntBASIC20.23■□□□□ 0.83
ZNF540Q8NDQ6 FBXO17-201ENST00000292852 2386 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
ZNF540Q8NDQ6 HEXB-201ENST00000261416 1901 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
ZNF540Q8NDQ6 CNNM1-201ENST00000356713 5959 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
ZNF540Q8NDQ6 SPTBN4-201ENST00000338932 8686 ntAPPRIS ALT1 TSL 5 BASIC20.23■□□□□ 0.83
ZNF540Q8NDQ6 LRIG1-201ENST00000273261 5273 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
ZNF540Q8NDQ6 EN1-201ENST00000295206 2457 ntAPPRIS P1 TSL 2 BASIC20.22■□□□□ 0.83
ZNF540Q8NDQ6 NCKAP1-201ENST00000360982 4989 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
ZNF540Q8NDQ6 ADORA2B-201ENST00000304222 1735 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
ZNF540Q8NDQ6 IRF3-228ENST00000601291 1556 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
ZNF540Q8NDQ6 MMP21-201ENST00000368808 1919 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
ZNF540Q8NDQ6 MIF-201ENST00000215754 939 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
ZNF540Q8NDQ6 LRP11-202ENST00000367368 1042 ntTSL 2 BASIC20.22■□□□□ 0.83
ZNF540Q8NDQ6 TMPO-AS1-201ENST00000546421 738 ntTSL 5 BASIC20.22■□□□□ 0.83
ZNF540Q8NDQ6 AC010913.1-201ENST00000608612 420 ntTSL 2 BASIC20.22■□□□□ 0.83
ZNF540Q8NDQ6 TFG-201ENST00000240851 1978 ntAPPRIS P3 TSL 1 (best) BASIC20.22■□□□□ 0.83
ZNF540Q8NDQ6 NRL-203ENST00000397002 1976 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
ZNF540Q8NDQ6 MADCAM1-206ENST00000617201 1491 ntAPPRIS ALT2 TSL 5 BASIC20.22■□□□□ 0.83
ZNF540Q8NDQ6 MADCAM1-207ENST00000619333 1485 ntAPPRIS ALT2 TSL 5 BASIC20.22■□□□□ 0.83
ZNF540Q8NDQ6 MADCAM1-210ENST00000622462 1461 ntAPPRIS ALT2 TSL 5 BASIC20.22■□□□□ 0.83
ZNF540Q8NDQ6 KLHDC9-203ENST00000392192 1333 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
ZNF540Q8NDQ6 CLPB-202ENST00000340729 2071 ntTSL 2 BASIC20.22■□□□□ 0.83
ZNF540Q8NDQ6 DBX2-201ENST00000332700 2806 ntAPPRIS P1 TSL 2 BASIC20.22■□□□□ 0.83
ZNF540Q8NDQ6 EML6-201ENST00000356458 8320 ntAPPRIS P1 TSL 5 BASIC20.21■□□□□ 0.83
ZNF540Q8NDQ6 B4GALT5-201ENST00000371711 4722 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
ZNF540Q8NDQ6 SLC25A47-202ENST00000557052 1552 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
ZNF540Q8NDQ6 ZNF584-203ENST00000593920 2187 ntTSL 2 BASIC20.21■□□□□ 0.83
ZNF540Q8NDQ6 ZSWIM7-201ENST00000399277 2008 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
ZNF540Q8NDQ6 OR2A1-AS1-204ENST00000470435 602 ntBASIC20.21■□□□□ 0.83
ZNF540Q8NDQ6 TK2-216ENST00000564917 1156 ntTSL 3 BASIC20.21■□□□□ 0.83
ZNF540Q8NDQ6 OXLD1-203ENST00000571503 803 ntTSL 2 BASIC20.21■□□□□ 0.83
ZNF540Q8NDQ6 NDEL1-219ENST00000585098 454 ntTSL 3 BASIC20.21■□□□□ 0.83
ZNF540Q8NDQ6 DUSP7-202ENST00000495880 3340 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
ZNF540Q8NDQ6 RDX-204ENST00000528498 2511 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
ZNF540Q8NDQ6 FKBP1A-211ENST00000618612 1518 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
ZNF540Q8NDQ6 ACHE-201ENST00000241069 2172 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
ZNF540Q8NDQ6 FNTA-208ENST00000529687 1950 ntTSL 2 BASIC20.21■□□□□ 0.83
ZNF540Q8NDQ6 UBE2E3-202ENST00000410062 1570 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
ZNF540Q8NDQ6 RBFOX2-209ENST00000438146 1356 ntAPPRIS P3 TSL 1 (best) BASIC20.21■□□□□ 0.83
ZNF540Q8NDQ6 TEX22-201ENST00000451127 2571 ntAPPRIS P1 TSL 2 BASIC20.2■□□□□ 0.82
ZNF540Q8NDQ6 UPF1-207ENST00000599848 5311 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
ZNF540Q8NDQ6 DACT1-204ENST00000541264 2610 ntAPPRIS ALT2 TSL 2 BASIC20.2■□□□□ 0.82
ZNF540Q8NDQ6 NDUFA10-204ENST00000407129 699 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
ZNF540Q8NDQ6 Z92544.1-202ENST00000571933 1220 ntBASIC20.2■□□□□ 0.82
ZNF540Q8NDQ6 ZEB1-AS1-205ENST00000605946 382 ntTSL 5 BASIC20.2■□□□□ 0.82
ZNF540Q8NDQ6 CCDC130-201ENST00000221554 1792 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
ZNF540Q8NDQ6 AL160276.1-201ENST00000636672 1312 ntAPPRIS P1 TSL 5 BASIC20.2■□□□□ 0.82
ZNF540Q8NDQ6 SIMC1-202ENST00000341199 2056 ntAPPRIS P3 TSL 2 BASIC20.2■□□□□ 0.82
ZNF540Q8NDQ6 DTWD2-203ENST00000510708 2307 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 77.2 ms