Protein–RNA interactions for Protein: Q9Y2B5

VPS9D1, VPS9 domain-containing protein 1, humanhuman

Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1Q9Y2B5 AP006623.1-201ENST00000506172 2061 ntTSL 5 BASIC21.9■■□□□ 1.1
VPS9D1Q9Y2B5 HTRA2-201ENST00000258080 2370 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
VPS9D1Q9Y2B5 HACD1-202ENST00000361271 2237 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
VPS9D1Q9Y2B5 SUMF1-201ENST00000272902 2159 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.1
VPS9D1Q9Y2B5 DPH1-203ENST00000570477 1747 ntAPPRIS ALT2 TSL 2 BASIC21.89■■□□□ 1.1
VPS9D1Q9Y2B5 HOXB7-201ENST00000239165 1371 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.1
VPS9D1Q9Y2B5 CASP9-203ENST00000375890 1351 ntTSL 2 BASIC21.89■■□□□ 1.1
VPS9D1Q9Y2B5 SLC19A1-212ENST00000567670 2029 ntAPPRIS ALT2 TSL 1 (best) BASIC21.89■■□□□ 1.1
VPS9D1Q9Y2B5 AC004687.1-201ENST00000579003 1625 ntBASIC21.89■■□□□ 1.09
VPS9D1Q9Y2B5 ARFIP2-205ENST00000525235 852 ntTSL 2 BASIC21.89■■□□□ 1.09
VPS9D1Q9Y2B5 OIP5-AS1-208ENST00000560706 473 ntTSL 5 BASIC21.89■■□□□ 1.09
VPS9D1Q9Y2B5 SLC19A1-209ENST00000485649 1896 ntAPPRIS ALT2 TSL 2 BASIC21.89■■□□□ 1.09
VPS9D1Q9Y2B5 FZD8-201ENST00000374694 4030 ntAPPRIS P1 BASIC21.89■■□□□ 1.09
VPS9D1Q9Y2B5 SCAND1-202ENST00000373991 1727 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
VPS9D1Q9Y2B5 B3GNT6-202ENST00000622824 2503 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
VPS9D1Q9Y2B5 HAGHL-212ENST00000564537 1667 ntTSL 2 BASIC21.88■■□□□ 1.09
VPS9D1Q9Y2B5 IGSF21-201ENST00000251296 1943 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
VPS9D1Q9Y2B5 AC079834.2-201ENST00000609776 1949 ntBASIC21.88■■□□□ 1.09
VPS9D1Q9Y2B5 CELF5-201ENST00000292672 1854 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
VPS9D1Q9Y2B5 TATDN2-201ENST00000287652 5342 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
VPS9D1Q9Y2B5 SDC3-202ENST00000339394 1580 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
VPS9D1Q9Y2B5 NDUFV2-201ENST00000318388 930 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
VPS9D1Q9Y2B5 TMEM134-202ENST00000393877 823 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
VPS9D1Q9Y2B5 PABPN1-207ENST00000556821 1220 ntTSL 2 BASIC21.88■■□□□ 1.09
VPS9D1Q9Y2B5 UQCR11-202ENST00000589880 504 ntAPPRIS P1 TSL 3 BASIC21.88■■□□□ 1.09
VPS9D1Q9Y2B5 FAM228B-208ENST00000613899 1238 ntAPPRIS ALT2 TSL 1 (best) BASIC21.88■■□□□ 1.09
VPS9D1Q9Y2B5 LINC01881-206ENST00000614114 957 ntTSL 2 BASIC21.88■■□□□ 1.09
VPS9D1Q9Y2B5 TMEM159-201ENST00000233047 2014 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
VPS9D1Q9Y2B5 STK19-201ENST00000375331 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC21.88■■□□□ 1.09
VPS9D1Q9Y2B5 LINC01960-201ENST00000563759 1884 ntBASIC21.88■■□□□ 1.09
VPS9D1Q9Y2B5 AC242852.2-201ENST00000615738 1807 ntBASIC21.87■■□□□ 1.09
VPS9D1Q9Y2B5 AFDN-AS1-201ENST00000359760 2238 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
VPS9D1Q9Y2B5 NEURL4-202ENST00000399464 5200 ntAPPRIS P4 TSL 1 (best) BASIC21.87■■□□□ 1.09
VPS9D1Q9Y2B5 CTAG1B-202ENST00000359887 998 ntTSL 2 BASIC21.87■■□□□ 1.09
VPS9D1Q9Y2B5 CDKN2A-207ENST00000497750 565 ntTSL 4 BASIC21.87■■□□□ 1.09
VPS9D1Q9Y2B5 AC019163.1-201ENST00000512634 610 ntTSL 2 BASIC21.87■■□□□ 1.09
VPS9D1Q9Y2B5 KRAS-204ENST00000557334 1052 ntTSL 5 BASIC21.87■■□□□ 1.09
VPS9D1Q9Y2B5 SRR-208ENST00000576848 588 ntTSL 4 BASIC21.87■■□□□ 1.09
VPS9D1Q9Y2B5 CDKN2A-212ENST00000578845 678 ntTSL 2 BASIC21.87■■□□□ 1.09
VPS9D1Q9Y2B5 ST3GAL4-213ENST00000530591 1459 ntAPPRIS P3 TSL 1 (best) BASIC21.87■■□□□ 1.09
VPS9D1Q9Y2B5 IRF3-207ENST00000593922 1494 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
VPS9D1Q9Y2B5 KLF3-203ENST00000514033 1871 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
VPS9D1Q9Y2B5 TANGO2-210ENST00000432883 2084 ntTSL 2 BASIC21.87■■□□□ 1.09
VPS9D1Q9Y2B5 IL17RE-201ENST00000383814 2704 ntAPPRIS P2 TSL 1 (best) BASIC21.86■■□□□ 1.09
VPS9D1Q9Y2B5 ASB6-201ENST00000277458 2330 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
VPS9D1Q9Y2B5 DPEP2-204ENST00000572888 2112 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
VPS9D1Q9Y2B5 SLC30A2-201ENST00000374276 2494 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
VPS9D1Q9Y2B5 MSL1-203ENST00000577454 2081 ntTSL 2 BASIC21.86■■□□□ 1.09
VPS9D1Q9Y2B5 HTATSF1-201ENST00000218364 2775 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
VPS9D1Q9Y2B5 CERS4-205ENST00000558331 1803 ntTSL 5 BASIC21.86■■□□□ 1.09
VPS9D1Q9Y2B5 DNAJC4-202ENST00000321685 1288 ntAPPRIS P3 TSL 1 (best) BASIC21.86■■□□□ 1.09
VPS9D1Q9Y2B5 U2AF1-202ENST00000380276 940 ntAPPRIS ALT2 TSL 1 (best) BASIC21.86■■□□□ 1.09
VPS9D1Q9Y2B5 MOSPD3-204ENST00000424091 1115 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
VPS9D1Q9Y2B5 DPP10-AS1-201ENST00000432658 730 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
VPS9D1Q9Y2B5 MMP28-203ENST00000612672 1092 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
VPS9D1Q9Y2B5 DNAJC4-212ENST00000628077 938 ntTSL 5 BASIC21.86■■□□□ 1.09
VPS9D1Q9Y2B5 MRPS2-202ENST00000371785 1640 ntAPPRIS P1 TSL 3 BASIC21.86■■□□□ 1.09
VPS9D1Q9Y2B5 KCNK13-201ENST00000282146 2522 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
VPS9D1Q9Y2B5 GADD45GIP1-201ENST00000316939 1782 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
VPS9D1Q9Y2B5 ECEL1P1-201ENST00000373592 1742 ntBASIC21.86■■□□□ 1.09
VPS9D1Q9Y2B5 DPH7-201ENST00000277540 1847 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
VPS9D1Q9Y2B5 NKIRAS2-204ENST00000393880 1644 ntAPPRIS P1 TSL 2 BASIC21.85■■□□□ 1.09
VPS9D1Q9Y2B5 POU2F2-215ENST00000560398 1788 ntTSL 5 BASIC21.85■■□□□ 1.09
VPS9D1Q9Y2B5 PGF-206ENST00000555567 1927 ntAPPRIS P3 TSL 1 (best) BASIC21.85■■□□□ 1.09
VPS9D1Q9Y2B5 RPP21-222ENST00000433076 577 ntTSL 2 BASIC21.85■■□□□ 1.09
VPS9D1Q9Y2B5 CCDC189-211ENST00000545825 1046 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
VPS9D1Q9Y2B5 AL512631.2-201ENST00000604634 923 ntBASIC21.85■■□□□ 1.09
VPS9D1Q9Y2B5 AC099791.2-201ENST00000605725 427 ntBASIC21.85■■□□□ 1.09
VPS9D1Q9Y2B5 SCUBE1-208ENST00000615096 1119 ntTSL 2 BASIC21.85■■□□□ 1.09
VPS9D1Q9Y2B5 TOX2-201ENST00000341197 1880 ntAPPRIS P1 TSL 2 BASIC21.85■■□□□ 1.09
VPS9D1Q9Y2B5 RAX-201ENST00000256852 2935 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
VPS9D1Q9Y2B5 EPCAM-202ENST00000405271 1530 ntTSL 5 BASIC21.85■■□□□ 1.09
VPS9D1Q9Y2B5 GTSE1-AS1-202ENST00000623117 1518 ntBASIC21.85■■□□□ 1.09
VPS9D1Q9Y2B5 CACNA1H-202ENST00000358590 8069 ntAPPRIS ALT2 TSL 5 BASIC21.85■■□□□ 1.09
VPS9D1Q9Y2B5 BTBD17-201ENST00000375366 1805 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
VPS9D1Q9Y2B5 NHLH1-201ENST00000302101 2563 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
VPS9D1Q9Y2B5 YY1AP1-212ENST00000404643 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC21.84■■□□□ 1.09
VPS9D1Q9Y2B5 NKX2-4-201ENST00000351817 2238 ntAPPRIS P1 TSL 5 BASIC21.84■■□□□ 1.09
VPS9D1Q9Y2B5 GAL3ST1-202ENST00000401975 1791 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
VPS9D1Q9Y2B5 KLF9-201ENST00000377126 5175 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
VPS9D1Q9Y2B5 LEFTY1-201ENST00000272134 1626 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
VPS9D1Q9Y2B5 DGKQ-201ENST00000273814 4636 ntAPPRIS P2 TSL 1 (best) BASIC21.84■■□□□ 1.09
VPS9D1Q9Y2B5 AC087742.1-201ENST00000575880 1738 ntBASIC21.84■■□□□ 1.09
VPS9D1Q9Y2B5 STK19-202ENST00000375333 1557 ntAPPRIS P3 TSL 1 (best) BASIC21.84■■□□□ 1.09
VPS9D1Q9Y2B5 TMEM259-201ENST00000333175 2581 ntAPPRIS P3 TSL 1 (best) BASIC21.84■■□□□ 1.09
VPS9D1Q9Y2B5 RASSF1-AS1-201ENST00000629828 790 ntBASIC21.84■■□□□ 1.09
VPS9D1Q9Y2B5 DPF1-206ENST00000420980 2227 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
VPS9D1Q9Y2B5 CREB1-205ENST00000430624 2005 ntAPPRIS P1 TSL 5 BASIC21.84■■□□□ 1.09
VPS9D1Q9Y2B5 AP004608.1-202ENST00000533390 1863 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
VPS9D1Q9Y2B5 PLEKHJ1-206ENST00000587962 1311 ntTSL 2 BASIC21.83■■□□□ 1.09
VPS9D1Q9Y2B5 NR2F1-AS1-210ENST00000606739 1431 ntTSL 2 BASIC21.83■■□□□ 1.09
VPS9D1Q9Y2B5 DACT1-201ENST00000335867 2571 ntAPPRIS P3 TSL 1 (best) BASIC21.83■■□□□ 1.09
VPS9D1Q9Y2B5 BIN1-203ENST00000346226 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC21.83■■□□□ 1.09
VPS9D1Q9Y2B5 HDHD5-203ENST00000399852 1118 ntTSL 3 BASIC21.83■■□□□ 1.09
VPS9D1Q9Y2B5 SMARCA5-AS1-201ENST00000500800 945 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
VPS9D1Q9Y2B5 pRNA.6-201ENST00000610482 90 ntBASIC21.83■■□□□ 1.09
VPS9D1Q9Y2B5 pRNA.5-201ENST00000612139 90 ntBASIC21.83■■□□□ 1.09
VPS9D1Q9Y2B5 pRNA.11-201ENST00000618423 90 ntBASIC21.83■■□□□ 1.09
VPS9D1Q9Y2B5 pRNA.13-201ENST00000619112 90 ntBASIC21.83■■□□□ 1.09
VPS9D1Q9Y2B5 AC133637.1-201ENST00000624115 1537 ntBASIC21.83■■□□□ 1.09
Retrieved 100 of 98,524 protein–RNA pairs in 111.3 ms