Protein–RNA interactions for Protein: P17096

HMGA1, High mobility group protein HMG-I/HMG-Y, humanhuman

Known RBP Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P17096 CDCP1-202ENST00000425231 1416 ntAPPRIS ALT2 TSL 1 (best) BASIC23.09■■□□□ 1.29
HMGA1P17096 PRR25-201ENST00000301698 1209 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
HMGA1P17096 UBE2J2-203ENST00000360466 1047 ntAPPRIS P1 TSL 2 BASIC23.09■■□□□ 1.29
HMGA1P17096 POLR2F-203ENST00000407936 582 ntTSL 3 BASIC23.09■■□□□ 1.29
HMGA1P17096 AL355877.1-204ENST00000451482 1078 ntTSL 1 (best) BASIC23.09■■□□□ 1.29
HMGA1P17096 POLR2F-207ENST00000460648 518 ntTSL 4 BASIC23.09■■□□□ 1.29
HMGA1P17096 TMEM70-203ENST00000517439 617 ntTSL 2 BASIC23.09■■□□□ 1.29
HMGA1P17096 AL133516.1-201ENST00000633012 540 ntTSL 5 BASIC23.09■■□□□ 1.29
HMGA1P17096 AC105233.4-201ENST00000642045 216 ntBASIC23.09■■□□□ 1.29
HMGA1P17096 MTX2-201ENST00000249442 1364 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
HMGA1P17096 STX18-205ENST00000505286 1380 ntTSL 1 (best) BASIC23.09■■□□□ 1.29
HMGA1P17096 RARA-203ENST00000394086 2008 ntTSL 2 BASIC23.09■■□□□ 1.29
HMGA1P17096 SPOCK3-222ENST00000512681 1457 ntTSL 2 BASIC23.09■■□□□ 1.29
HMGA1P17096 WT1-210ENST00000639563 1494 ntAPPRIS ALT2 TSL 1 (best) BASIC23.09■■□□□ 1.29
HMGA1P17096 SLC35B2-201ENST00000393810 1898 ntTSL 2 BASIC23.09■■□□□ 1.29
HMGA1P17096 EI24-211ENST00000534546 1544 ntTSL 2 BASIC23.08■■□□□ 1.29
HMGA1P17096 SRXN1-201ENST00000381962 2698 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
HMGA1P17096 SLC25A39-201ENST00000225308 1607 ntAPPRIS P3 TSL 1 (best) BASIC23.08■■□□□ 1.29
HMGA1P17096 CTSF-201ENST00000310325 2035 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
HMGA1P17096 GUK1-207ENST00000366726 873 ntAPPRIS P3 TSL 3 BASIC23.08■■□□□ 1.29
HMGA1P17096 LINC02136-201ENST00000567469 530 ntTSL 4 BASIC23.08■■□□□ 1.29
HMGA1P17096 LRRC37A17P-202ENST00000570478 572 ntTSL 4 BASIC23.08■■□□□ 1.29
HMGA1P17096 PLEKHF1-204ENST00000592810 1357 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
HMGA1P17096 MAP2K5-204ENST00000395476 1689 ntTSL 1 (best) BASIC23.08■■□□□ 1.29
HMGA1P17096 UBE3C-209ENST00000611269 1866 ntTSL 2 BASIC23.08■■□□□ 1.29
HMGA1P17096 ZFP91-CNTF-201ENST00000389919 2319 ntAPPRIS P5 TSL 2 BASIC23.08■■□□□ 1.28
HMGA1P17096 FAM220A-201ENST00000313324 2214 ntTSL 1 (best) BASIC23.08■■□□□ 1.28
HMGA1P17096 NAE1-202ENST00000359087 1825 ntTSL 2 BASIC23.08■■□□□ 1.28
HMGA1P17096 FBXL22-201ENST00000360587 1526 ntAPPRIS P2 TSL 1 (best) BASIC23.08■■□□□ 1.28
HMGA1P17096 GALK1-201ENST00000225614 1445 ntAPPRIS P1 TSL 2 BASIC23.08■■□□□ 1.28
HMGA1P17096 FAM21EP-202ENST00000456967 2177 ntTSL 2 BASIC23.07■■□□□ 1.28
HMGA1P17096 SNX18-201ENST00000326277 2063 ntTSL 2 BASIC23.07■■□□□ 1.28
HMGA1P17096 TSPAN2-201ENST00000369515 793 ntTSL 3 BASIC23.07■■□□□ 1.28
HMGA1P17096 CDKN2AIPNL-201ENST00000395009 800 ntTSL 1 (best) BASIC23.07■■□□□ 1.28
HMGA1P17096 SPOCK2-203ENST00000412663 1284 ntTSL 5 BASIC23.07■■□□□ 1.28
HMGA1P17096 CENPVL3-201ENST00000417339 864 ntAPPRIS P1 BASIC23.07■■□□□ 1.28
HMGA1P17096 KRT18P5-201ENST00000436075 1291 ntBASIC23.07■■□□□ 1.28
HMGA1P17096 GLI3-203ENST00000437480 451 ntTSL 2 BASIC23.07■■□□□ 1.28
HMGA1P17096 SLC25A45-206ENST00000526432 894 ntTSL 1 (best) BASIC23.07■■□□□ 1.28
HMGA1P17096 CCDC92B-201ENST00000575506 885 ntBASIC23.07■■□□□ 1.28
HMGA1P17096 AL831711.1-201ENST00000636824 569 ntTSL 4 BASIC23.07■■□□□ 1.28
HMGA1P17096 ANOS2P-203ENST00000472227 1816 ntBASIC23.07■■□□□ 1.28
HMGA1P17096 NDEL1-201ENST00000334527 2372 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
HMGA1P17096 ZDHHC16-203ENST00000353979 1647 ntTSL 1 (best) BASIC23.07■■□□□ 1.28
HMGA1P17096 GRK4-202ENST00000398051 2068 ntTSL 1 (best) BASIC23.07■■□□□ 1.28
HMGA1P17096 MIS18A-201ENST00000290130 1575 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
HMGA1P17096 TBR1-202ENST00000410035 1454 ntTSL 2 BASIC23.06■■□□□ 1.28
HMGA1P17096 HTATIP2-204ENST00000451739 1748 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
HMGA1P17096 B4GAT1-201ENST00000311181 2072 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
HMGA1P17096 LY6E-201ENST00000292494 1181 ntAPPRIS P2 TSL 1 (best) BASIC23.06■■□□□ 1.28
HMGA1P17096 LRRC75A-AS1-202ENST00000470491 1057 ntTSL 1 (best) BASIC23.06■■□□□ 1.28
HMGA1P17096 AC108002.2-201ENST00000519782 340 ntTSL 4 BASIC23.06■■□□□ 1.28
HMGA1P17096 AP2S1-203ENST00000593442 636 ntTSL 2 BASIC23.06■■□□□ 1.28
HMGA1P17096 IMPDH1-210ENST00000480861 1765 ntAPPRIS P2 TSL 2 BASIC23.06■■□□□ 1.28
HMGA1P17096 ARRDC1-AS1-201ENST00000371417 1409 ntTSL 1 (best) BASIC23.06■■□□□ 1.28
HMGA1P17096 RELL2-205ENST00000518856 1419 ntTSL 5 BASIC23.06■■□□□ 1.28
HMGA1P17096 CNTFR-201ENST00000351266 1910 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
HMGA1P17096 MPST-204ENST00000404393 1329 ntTSL 5 BASIC23.06■■□□□ 1.28
HMGA1P17096 GSR-204ENST00000537535 1323 ntTSL 1 (best) BASIC23.06■■□□□ 1.28
HMGA1P17096 DENND1B-204ENST00000367396 2177 ntAPPRIS P3 TSL 1 (best) BASIC23.06■■□□□ 1.28
HMGA1P17096 IL15RA-204ENST00000379977 1626 ntAPPRIS P3 TSL 1 (best) BASIC23.05■■□□□ 1.28
HMGA1P17096 SRI-201ENST00000265729 2010 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
HMGA1P17096 PRKCZ-AS1-201ENST00000333854 1253 ntTSL 2 BASIC23.05■■□□□ 1.28
HMGA1P17096 PRKCQ-AS1-202ENST00000445427 1133 ntTSL 1 (best) BASIC23.05■■□□□ 1.28
HMGA1P17096 ZFAS1-206ENST00000450535 1075 ntTSL 3 BASIC23.05■■□□□ 1.28
HMGA1P17096 TERF1P2-201ENST00000583350 1212 ntBASIC23.05■■□□□ 1.28
HMGA1P17096 AC068587.7-201ENST00000641602 218 ntBASIC23.05■■□□□ 1.28
HMGA1P17096 DIXDC1-205ENST00000529225 1945 ntTSL 5 BASIC23.05■■□□□ 1.28
HMGA1P17096 ZMYND11-210ENST00000403354 1664 ntTSL 5 BASIC23.05■■□□□ 1.28
HMGA1P17096 CYS1-201ENST00000381813 2738 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
HMGA1P17096 ASPSCR1-208ENST00000580534 1776 ntTSL 2 BASIC23.04■■□□□ 1.28
HMGA1P17096 CCR10-203ENST00000591765 1942 ntTSL 3 BASIC23.04■■□□□ 1.28
HMGA1P17096 GLT8D2-205ENST00000548660 1835 ntAPPRIS P1 TSL 2 BASIC23.04■■□□□ 1.28
HMGA1P17096 PHPT1-201ENST00000247665 890 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
HMGA1P17096 GADD45A-201ENST00000370985 803 ntTSL 1 (best) BASIC23.04■■□□□ 1.28
HMGA1P17096 NT5C3AP1-201ENST00000394500 1012 ntBASIC23.04■■□□□ 1.28
HMGA1P17096 H1FX-AS1-204ENST00000511998 917 ntTSL 5 BASIC23.04■■□□□ 1.28
HMGA1P17096 PTGDR-202ENST00000553372 1216 ntTSL 3 BASIC23.04■■□□□ 1.28
HMGA1P17096 MRM1-203ENST00000612760 1284 ntTSL 1 (best) BASIC23.04■■□□□ 1.28
HMGA1P17096 KCNMA1-224ENST00000618048 1269 ntTSL 1 (best) BASIC23.04■■□□□ 1.28
HMGA1P17096 PIP4K2B-204ENST00000619039 5734 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
HMGA1P17096 AC009506.1-201ENST00000418474 1494 ntTSL 2 BASIC23.04■■□□□ 1.28
HMGA1P17096 FAM120B-204ENST00000625626 1794 ntAPPRIS ALT2 TSL 2 BASIC23.04■■□□□ 1.28
HMGA1P17096 TMEM256-PLSCR3-204ENST00000573331 2557 ntAPPRIS P5 TSL 2 BASIC23.03■■□□□ 1.28
HMGA1P17096 HSF1-201ENST00000400780 2105 ntTSL 5 BASIC23.03■■□□□ 1.28
HMGA1P17096 RAD21L1-202ENST00000402452 1707 ntTSL 5 BASIC23.03■■□□□ 1.28
HMGA1P17096 AC092068.2-201ENST00000590491 1708 ntBASIC23.03■■□□□ 1.28
HMGA1P17096 EIF6-203ENST00000374450 1289 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
HMGA1P17096 GADD45G-202ENST00000375769 977 ntTSL 2 BASIC23.03■■□□□ 1.28
HMGA1P17096 AC012313.1-204ENST00000444227 462 ntTSL 1 (best) BASIC23.03■■□□□ 1.28
HMGA1P17096 AKT1-203ENST00000407796 2710 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
HMGA1P17096 MBD2-201ENST00000256429 5188 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
HMGA1P17096 DONSON-204ENST00000432378 1618 ntTSL 5 BASIC23.03■■□□□ 1.28
HMGA1P17096 PIKFYVE-203ENST00000392202 2039 ntTSL 1 (best) BASIC23.03■■□□□ 1.28
HMGA1P17096 D2HGDH-203ENST00000403782 2208 ntTSL 2 BASIC23.02■■□□□ 1.28
HMGA1P17096 LINC02228-203ENST00000641970 1355 ntBASIC23.02■■□□□ 1.28
HMGA1P17096 XPA-201ENST00000375128 1417 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
HMGA1P17096 GP9-201ENST00000307395 889 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
HMGA1P17096 MOSPD3-202ENST00000379527 1016 ntAPPRIS P1 TSL 5 BASIC23.02■■□□□ 1.28
HMGA1P17096 TSEN15-207ENST00000533373 618 ntTSL 2 BASIC23.02■■□□□ 1.28
Retrieved 100 of 98,524 protein–RNA pairs in 76.2 ms