Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 LINC01167-201ENST00000423232 604 ntTSL 3 BASIC22.29■■□□□ 1.16
HDDC3Q8N4P3 GLI4-210ENST00000523522 1297 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
HDDC3Q8N4P3 LRRC37A17P-202ENST00000570478 572 ntTSL 4 BASIC22.29■■□□□ 1.16
HDDC3Q8N4P3 AC005775.1-201ENST00000592413 850 ntTSL 5 BASIC22.29■■□□□ 1.16
HDDC3Q8N4P3 CYB561D2-205ENST00000425346 1319 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
HDDC3Q8N4P3 PPP2R2D-201ENST00000455566 5738 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
HDDC3Q8N4P3 LSM8-203ENST00000422760 1920 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
HDDC3Q8N4P3 STK19-201ENST00000375331 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC22.28■■□□□ 1.16
HDDC3Q8N4P3 POLD2-207ENST00000452185 1659 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
HDDC3Q8N4P3 RTL8C-201ENST00000257013 1181 ntAPPRIS P1 BASIC22.28■■□□□ 1.16
HDDC3Q8N4P3 GUK1-207ENST00000366726 873 ntAPPRIS P3 TSL 3 BASIC22.28■■□□□ 1.16
HDDC3Q8N4P3 PRDX4-202ENST00000379341 1005 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
HDDC3Q8N4P3 GRPEL2-202ENST00000416916 1006 ntTSL 2 BASIC22.28■■□□□ 1.16
HDDC3Q8N4P3 ZFYVE28-207ENST00000509171 1135 ntTSL 2 BASIC22.28■■□□□ 1.16
HDDC3Q8N4P3 RAB43-208ENST00000615093 783 ntTSL 5 BASIC22.28■■□□□ 1.16
HDDC3Q8N4P3 AL358852.1-201ENST00000623174 1268 ntBASIC22.28■■□□□ 1.16
HDDC3Q8N4P3 RPIA-201ENST00000283646 1848 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
HDDC3Q8N4P3 SLC25A29-201ENST00000359232 2385 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
HDDC3Q8N4P3 CYP2A13-201ENST00000330436 1739 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
HDDC3Q8N4P3 SCAND1-202ENST00000373991 1727 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
HDDC3Q8N4P3 NAGS-201ENST00000293404 2182 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
HDDC3Q8N4P3 TRAF4-205ENST00000444415 1456 ntTSL 5 BASIC22.28■■□□□ 1.16
HDDC3Q8N4P3 ANKRD53-204ENST00000457410 1671 ntTSL 5 BASIC22.27■■□□□ 1.16
HDDC3Q8N4P3 AP002761.3-201ENST00000546324 1695 ntTSL 2 BASIC22.27■■□□□ 1.16
HDDC3Q8N4P3 NPAS1-208ENST00000602212 2117 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
HDDC3Q8N4P3 MFSD14C-201ENST00000375223 619 ntAPPRIS ALT2 TSL 5 BASIC22.27■■□□□ 1.16
HDDC3Q8N4P3 ID1-201ENST00000376105 1233 ntBASIC22.27■■□□□ 1.16
HDDC3Q8N4P3 MIR572-201ENST00000384983 95 ntBASIC22.27■■□□□ 1.16
HDDC3Q8N4P3 AC019068.1-201ENST00000415226 552 ntTSL 4 BASIC22.27■■□□□ 1.16
HDDC3Q8N4P3 GXYLT1P2-201ENST00000433312 1230 ntBASIC22.27■■□□□ 1.16
HDDC3Q8N4P3 IQCJ-SCHIP1-202ENST00000460298 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC22.27■■□□□ 1.16
HDDC3Q8N4P3 RAB6A-204ENST00000536566 1267 ntTSL 5 BASIC22.27■■□□□ 1.16
HDDC3Q8N4P3 TUNAR-203ENST00000554321 767 ntAPPRIS P1 TSL 4 BASIC22.27■■□□□ 1.16
HDDC3Q8N4P3 DUX4L2-201ENST00000561772 1275 ntBASIC22.27■■□□□ 1.16
HDDC3Q8N4P3 DUX4-206ENST00000616166 1275 ntAPPRIS P2 BASIC22.27■■□□□ 1.16
HDDC3Q8N4P3 DUX4L6-201ENST00000626483 1275 ntBASIC22.27■■□□□ 1.16
HDDC3Q8N4P3 DUX4L1-201ENST00000627662 1275 ntBASIC22.27■■□□□ 1.16
HDDC3Q8N4P3 DUX4L8-201ENST00000629013 1275 ntBASIC22.27■■□□□ 1.16
HDDC3Q8N4P3 DUX4L3-201ENST00000630187 1275 ntBASIC22.27■■□□□ 1.16
HDDC3Q8N4P3 DUX4L7-201ENST00000630678 1275 ntBASIC22.27■■□□□ 1.16
HDDC3Q8N4P3 DUX4L5-201ENST00000630834 1275 ntBASIC22.27■■□□□ 1.16
HDDC3Q8N4P3 AL031602.1-201ENST00000633169 911 ntBASIC22.27■■□□□ 1.16
HDDC3Q8N4P3 XBP1-207ENST00000611155 1794 ntTSL 5 BASIC22.27■■□□□ 1.16
HDDC3Q8N4P3 C1QL2-201ENST00000272520 2043 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
HDDC3Q8N4P3 ZC3H14-219ENST00000556945 2075 ntTSL 5 BASIC22.26■■□□□ 1.15
HDDC3Q8N4P3 PACRGL-201ENST00000295290 1937 ntTSL 5 BASIC22.26■■□□□ 1.15
HDDC3Q8N4P3 CDX1-201ENST00000231656 1758 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
HDDC3Q8N4P3 AC005410.1-201ENST00000579522 462 ntTSL 3 BASIC22.26■■□□□ 1.15
HDDC3Q8N4P3 AC092437.1-201ENST00000624794 1048 ntBASIC22.26■■□□□ 1.15
HDDC3Q8N4P3 IRF3-207ENST00000593922 1494 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
HDDC3Q8N4P3 PDIA2-201ENST00000219406 1698 ntAPPRIS P2 TSL 1 (best) BASIC22.26■■□□□ 1.15
HDDC3Q8N4P3 RHBDL3-204ENST00000538145 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC22.26■■□□□ 1.15
HDDC3Q8N4P3 SPATA22-214ENST00000575375 1374 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
HDDC3Q8N4P3 MEIS3-201ENST00000331559 2104 ntAPPRIS ALT2 TSL 5 BASIC22.25■■□□□ 1.15
HDDC3Q8N4P3 CENPVL3-201ENST00000417339 864 ntAPPRIS P1 BASIC22.25■■□□□ 1.15
HDDC3Q8N4P3 ATOX1-207ENST00000524142 749 ntAPPRIS P1 TSL 5 BASIC22.25■■□□□ 1.15
HDDC3Q8N4P3 MIF4GD-211ENST00000580571 952 ntTSL 2 BASIC22.25■■□□□ 1.15
HDDC3Q8N4P3 AC024267.6-201ENST00000580603 583 ntTSL 3 BASIC22.25■■□□□ 1.15
HDDC3Q8N4P3 AL831711.1-201ENST00000636824 569 ntTSL 4 BASIC22.25■■□□□ 1.15
HDDC3Q8N4P3 TCP1-202ENST00000392168 1878 ntTSL 5 BASIC22.25■■□□□ 1.15
HDDC3Q8N4P3 BCL2L12-212ENST00000616144 1854 ntAPPRIS P3 TSL 1 (best) BASIC22.25■■□□□ 1.15
HDDC3Q8N4P3 EXOG-203ENST00000422077 1317 ntTSL 2 BASIC22.25■■□□□ 1.15
HDDC3Q8N4P3 FAM102B-202ENST00000405454 1585 ntAPPRIS ALT2 TSL 5 BASIC22.25■■□□□ 1.15
HDDC3Q8N4P3 STX4-202ENST00000394998 1498 ntTSL 2 BASIC22.24■■□□□ 1.15
HDDC3Q8N4P3 GP9-201ENST00000307395 889 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
HDDC3Q8N4P3 HES6-202ENST00000409002 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC22.24■■□□□ 1.15
HDDC3Q8N4P3 AC123595.1-201ENST00000440769 1046 ntBASIC22.24■■□□□ 1.15
HDDC3Q8N4P3 AP005435.1-201ENST00000529293 1178 ntBASIC22.24■■□□□ 1.15
HDDC3Q8N4P3 AL583722.4-201ENST00000555524 716 ntTSL 3 BASIC22.24■■□□□ 1.15
HDDC3Q8N4P3 NEDD4L-225ENST00000589054 1033 ntTSL 3 BASIC22.24■■□□□ 1.15
HDDC3Q8N4P3 ZNRF1-201ENST00000320619 2479 ntTSL 1 (best) BASIC22.24■■□□□ 1.15
HDDC3Q8N4P3 TMED4-205ENST00000481238 1755 ntTSL 1 (best) BASIC22.24■■□□□ 1.15
HDDC3Q8N4P3 BTBD17-201ENST00000375366 1805 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
HDDC3Q8N4P3 DHH-201ENST00000266991 1936 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
HDDC3Q8N4P3 FLOT1-201ENST00000376389 1912 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
HDDC3Q8N4P3 PREB-202ENST00000406567 1910 ntTSL 5 BASIC22.23■■□□□ 1.15
HDDC3Q8N4P3 ERI3-201ENST00000372257 1684 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
HDDC3Q8N4P3 POU2F3-206ENST00000543440 1953 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
HDDC3Q8N4P3 MBOAT7-201ENST00000245615 2529 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
HDDC3Q8N4P3 C7orf26-202ENST00000359073 1762 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
HDDC3Q8N4P3 TBL1X-201ENST00000217964 5871 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
HDDC3Q8N4P3 GADD45A-201ENST00000370985 803 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
HDDC3Q8N4P3 AC062017.1-203ENST00000413029 455 ntTSL 2 BASIC22.23■■□□□ 1.15
HDDC3Q8N4P3 AC027612.3-201ENST00000413684 1047 ntBASIC22.23■■□□□ 1.15
HDDC3Q8N4P3 DLX3-202ENST00000512495 834 ntTSL 2 BASIC22.23■■□□□ 1.15
HDDC3Q8N4P3 GALNS-211ENST00000568311 703 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
HDDC3Q8N4P3 MIR6084-201ENST00000622012 110 ntBASIC22.23■■□□□ 1.15
HDDC3Q8N4P3 DDX42-201ENST00000359353 2783 ntTSL 5 BASIC22.23■■□□□ 1.15
HDDC3Q8N4P3 HSD11B2-201ENST00000326152 1900 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
HDDC3Q8N4P3 LMTK3-201ENST00000270238 4972 ntAPPRIS P2 TSL 1 (best) BASIC22.23■■□□□ 1.15
HDDC3Q8N4P3 ARG2-201ENST00000261783 2045 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
HDDC3Q8N4P3 MAGI2-217ENST00000629359 6704 ntTSL 5 BASIC22.23■■□□□ 1.15
HDDC3Q8N4P3 HMGA2-205ENST00000425208 1444 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
HDDC3Q8N4P3 AC096541.1-201ENST00000445070 1807 ntTSL 2 BASIC22.22■■□□□ 1.15
HDDC3Q8N4P3 STK19-202ENST00000375333 1557 ntAPPRIS P3 TSL 1 (best) BASIC22.22■■□□□ 1.15
HDDC3Q8N4P3 GTF2IP1-204ENST00000616377 2632 ntTSL 2 BASIC22.22■■□□□ 1.15
HDDC3Q8N4P3 FAM110A-206ENST00000541082 1614 ntAPPRIS P1 TSL 3 BASIC22.22■■□□□ 1.15
HDDC3Q8N4P3 MPC1-202ENST00000360961 962 ntAPPRIS P2 TSL 5 BASIC22.22■■□□□ 1.15
HDDC3Q8N4P3 NINJ1-201ENST00000375446 1281 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
HDDC3Q8N4P3 PYCR3-203ENST00000433751 1000 ntAPPRIS ALT2 TSL 2 BASIC22.22■■□□□ 1.15
Retrieved 100 of 98,524 protein–RNA pairs in 98.2 ms