Protein–RNA interactions for Protein: P39059

COL15A1, Collagen alpha-1(XV) chain, humanhuman

Predictions only

Length 1,388 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL15A1P39059 HMGA2-205ENST00000425208 1444 ntTSL 1 (best) BASIC28.4■■■□□ 2.14
COL15A1P39059 RASD1-202ENST00000579152 1404 ntTSL 2 BASIC28.4■■■□□ 2.14
COL15A1P39059 RARA-204ENST00000394089 2024 ntAPPRIS P1 TSL 2 BASIC28.4■■■□□ 2.14
COL15A1P39059 STK19-201ENST00000375331 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC28.4■■■□□ 2.14
COL15A1P39059 XBP1-207ENST00000611155 1794 ntTSL 5 BASIC28.39■■■□□ 2.14
COL15A1P39059 XBP1-201ENST00000216037 1850 ntAPPRIS P2 TSL 1 (best) BASIC28.39■■■□□ 2.14
COL15A1P39059 GNAS-201ENST00000265620 1866 ntAPPRIS P3 TSL 1 (best) BASIC28.39■■■□□ 2.14
COL15A1P39059 PRKCZ-AS1-201ENST00000333854 1253 ntTSL 2 BASIC28.39■■■□□ 2.14
COL15A1P39059 TCTEX1D4-201ENST00000339355 763 ntAPPRIS P1 BASIC28.39■■■□□ 2.14
COL15A1P39059 AC145207.2-202ENST00000576554 565 ntTSL 5 BASIC28.39■■■□□ 2.14
COL15A1P39059 KRT18P61-201ENST00000585825 1298 ntBASIC28.39■■■□□ 2.14
COL15A1P39059 TBR1-202ENST00000410035 1454 ntTSL 2 BASIC28.39■■■□□ 2.14
COL15A1P39059 MBOAT7-201ENST00000245615 2529 ntAPPRIS P1 TSL 1 (best) BASIC28.39■■■□□ 2.14
COL15A1P39059 UCN-201ENST00000296099 795 ntAPPRIS P1 TSL 1 (best) BASIC28.38■■■□□ 2.13
COL15A1P39059 LGI4-206ENST00000591633 1113 ntTSL 1 (best) BASIC28.38■■■□□ 2.13
COL15A1P39059 AC007773.1-201ENST00000592680 972 ntTSL 2 BASIC28.38■■■□□ 2.13
COL15A1P39059 MME-202ENST00000382989 1319 ntTSL 1 (best) BASIC28.38■■■□□ 2.13
COL15A1P39059 EIF3J-202ENST00000424492 1550 ntTSL 4 BASIC28.38■■■□□ 2.13
COL15A1P39059 B3GNT4-201ENST00000324189 1642 ntTSL 1 (best) BASIC28.38■■■□□ 2.13
COL15A1P39059 C1QTNF4-201ENST00000302514 1664 ntAPPRIS P1 TSL 1 (best) BASIC28.38■■■□□ 2.13
COL15A1P39059 C1QL2-201ENST00000272520 2043 ntAPPRIS P1 TSL 1 (best) BASIC28.38■■■□□ 2.13
COL15A1P39059 GJD4-201ENST00000321660 1580 ntAPPRIS P1 TSL 1 (best) BASIC28.37■■■□□ 2.13
COL15A1P39059 YIF1B-202ENST00000337679 1257 ntTSL 1 (best) BASIC28.37■■■□□ 2.13
COL15A1P39059 CLN3-207ENST00000395653 1430 ntTSL 5 BASIC28.37■■■□□ 2.13
COL15A1P39059 DENND3-207ENST00000518347 850 ntTSL 2 BASIC28.37■■■□□ 2.13
COL15A1P39059 STMN4-204ENST00000519997 1623 ntTSL 2 BASIC28.37■■■□□ 2.13
COL15A1P39059 GSR-204ENST00000537535 1323 ntTSL 1 (best) BASIC28.37■■■□□ 2.13
COL15A1P39059 CAPNS1-207ENST00000589146 578 ntTSL 3 BASIC28.37■■■□□ 2.13
COL15A1P39059 UQCR11-202ENST00000589880 504 ntAPPRIS P1 TSL 3 BASIC28.37■■■□□ 2.13
COL15A1P39059 GTF2IP1-204ENST00000616377 2632 ntTSL 2 BASIC28.37■■■□□ 2.13
COL15A1P39059 PON2-218ENST00000633531 1653 ntAPPRIS P1 TSL 1 (best) BASIC28.37■■■□□ 2.13
COL15A1P39059 AC105233.4-201ENST00000642045 216 ntBASIC28.37■■■□□ 2.13
COL15A1P39059 ARF1-213ENST00000540651 1972 ntAPPRIS P1 TSL 2 BASIC28.37■■■□□ 2.13
COL15A1P39059 ARFIP2-202ENST00000396777 1868 ntAPPRIS P1 TSL 2 BASIC28.37■■■□□ 2.13
COL15A1P39059 B3GAT3-201ENST00000265471 1641 ntAPPRIS P1 TSL 1 (best) BASIC28.37■■■□□ 2.13
COL15A1P39059 GPR35-204ENST00000430267 1399 ntAPPRIS ALT2 TSL 5 BASIC28.37■■■□□ 2.13
COL15A1P39059 SLC26A1-203ENST00000398520 1111 ntTSL 1 (best) BASIC28.37■■■□□ 2.13
COL15A1P39059 ITGA9-AS1-210ENST00000457661 738 ntTSL 4 BASIC28.37■■■□□ 2.13
COL15A1P39059 TMEM266-201ENST00000388942 2520 ntAPPRIS P1 TSL 5 BASIC28.37■■■□□ 2.13
COL15A1P39059 AC144652.1-201ENST00000609974 1624 ntBASIC28.36■■■□□ 2.13
COL15A1P39059 NAGS-201ENST00000293404 2182 ntAPPRIS P1 TSL 1 (best) BASIC28.36■■■□□ 2.13
COL15A1P39059 ALDH16A1-203ENST00000540132 2174 ntTSL 2 BASIC28.36■■■□□ 2.13
COL15A1P39059 LINC01124-201ENST00000409786 2117 ntBASIC28.36■■■□□ 2.13
COL15A1P39059 RAMP2-201ENST00000253796 780 ntAPPRIS P2 TSL 1 (best) BASIC28.36■■■□□ 2.13
COL15A1P39059 GZMM-201ENST00000264553 940 ntAPPRIS P1 TSL 1 (best) BASIC28.36■■■□□ 2.13
COL15A1P39059 TNFRSF18-202ENST00000379265 705 ntAPPRIS ALT2 TSL 1 (best) BASIC28.36■■■□□ 2.13
COL15A1P39059 PABPN1-202ENST00000397276 2768 ntAPPRIS ALT1 TSL 1 (best) BASIC28.35■■■□□ 2.13
COL15A1P39059 RHOQ-201ENST00000238738 2975 ntAPPRIS P1 TSL 1 (best) BASIC28.35■■■□□ 2.13
COL15A1P39059 ZFAS1-206ENST00000450535 1075 ntTSL 3 BASIC28.35■■■□□ 2.13
COL15A1P39059 KISS1R-201ENST00000234371 1625 ntAPPRIS P1 TSL 1 (best) BASIC28.35■■■□□ 2.13
COL15A1P39059 ZNF205-201ENST00000219091 1947 ntAPPRIS P1 TSL 5 BASIC28.34■■■□□ 2.13
COL15A1P39059 TLX1-203ENST00000467928 1838 ntTSL 1 (best) BASIC28.34■■■□□ 2.13
COL15A1P39059 UXS1-201ENST00000283148 2099 ntAPPRIS ALT1 TSL 2 BASIC28.34■■■□□ 2.13
COL15A1P39059 SHD-204ENST00000599689 1729 ntTSL 5 BASIC28.34■■■□□ 2.13
COL15A1P39059 PREB-202ENST00000406567 1910 ntTSL 5 BASIC28.34■■■□□ 2.13
COL15A1P39059 AC068385.1-201ENST00000533218 409 ntTSL 3 BASIC28.34■■■□□ 2.13
COL15A1P39059 LINC02136-201ENST00000567469 530 ntTSL 4 BASIC28.34■■■□□ 2.13
COL15A1P39059 GNAO1-211ENST00000570235 568 ntTSL 2 BASIC28.34■■■□□ 2.13
COL15A1P39059 ZFYVE28-202ENST00000503000 1874 ntTSL 1 (best) BASIC28.34■■■□□ 2.13
COL15A1P39059 ABHD8-201ENST00000247706 2090 ntAPPRIS P1 TSL 1 (best) BASIC28.33■■■□□ 2.13
COL15A1P39059 NAAA-204ENST00000507187 1750 ntTSL 1 (best) BASIC28.33■■■□□ 2.13
COL15A1P39059 AP002761.3-201ENST00000546324 1695 ntTSL 2 BASIC28.33■■■□□ 2.13
COL15A1P39059 NIPSNAP2-205ENST00000446778 1882 ntTSL 2 BASIC28.33■■■□□ 2.13
COL15A1P39059 UBALD1-208ENST00000591401 1305 ntTSL 5 BASIC28.33■■■□□ 2.13
COL15A1P39059 IRF3-228ENST00000601291 1556 ntTSL 1 (best) BASIC28.33■■■□□ 2.13
COL15A1P39059 TMED2-201ENST00000262225 2560 ntAPPRIS P1 TSL 1 (best) BASIC28.33■■■□□ 2.13
COL15A1P39059 TPSG1-201ENST00000234798 1108 ntAPPRIS P1 TSL 1 (best) BASIC28.33■■■□□ 2.13
COL15A1P39059 NDUFB2-207ENST00000465506 1101 ntAPPRIS P1 TSL 1 (best) BASIC28.33■■■□□ 2.13
COL15A1P39059 CIRBP-222ENST00000589235 1073 ntAPPRIS ALT1 TSL 2 BASIC28.33■■■□□ 2.13
COL15A1P39059 SCAMP3-202ENST00000355379 1537 ntTSL 1 (best) BASIC28.33■■■□□ 2.13
COL15A1P39059 RILP-201ENST00000301336 1771 ntAPPRIS P1 TSL 1 (best) BASIC28.32■■■□□ 2.12
COL15A1P39059 R3HDM4-203ENST00000587975 1765 ntTSL 3 BASIC28.32■■■□□ 2.12
COL15A1P39059 HOMER2-201ENST00000304231 1990 ntAPPRIS P4 TSL 5 BASIC28.32■■■□□ 2.12
COL15A1P39059 BTBD7-201ENST00000298896 2621 ntTSL 1 (best) BASIC28.32■■■□□ 2.12
COL15A1P39059 SIRT7-201ENST00000328666 1743 ntAPPRIS P1 TSL 1 (best) BASIC28.32■■■□□ 2.12
COL15A1P39059 ASMT-202ENST00000381233 989 ntTSL 1 (best) BASIC28.32■■■□□ 2.12
COL15A1P39059 LRRC75A-AS1-202ENST00000470491 1057 ntTSL 1 (best) BASIC28.32■■■□□ 2.12
COL15A1P39059 VIM-AS1-202ENST00000605833 918 ntTSL 3 BASIC28.32■■■□□ 2.12
COL15A1P39059 SAMD8-202ENST00000372690 1654 ntTSL 1 (best) BASIC28.32■■■□□ 2.12
COL15A1P39059 LEF1-AS1-207ENST00000512637 1675 ntTSL 1 (best) BASIC28.32■■■□□ 2.12
COL15A1P39059 ST3GAL5-269ENST00000640992 2292 ntAPPRIS ALT2 TSL 5 BASIC28.32■■■□□ 2.12
COL15A1P39059 KCTD5-201ENST00000301738 2482 ntAPPRIS P1 TSL 1 (best) BASIC28.31■■■□□ 2.12
COL15A1P39059 CBARP-202ENST00000382477 2453 ntAPPRIS ALT2 TSL 5 BASIC28.31■■■□□ 2.12
COL15A1P39059 SLC30A3-201ENST00000233535 2260 ntAPPRIS P1 TSL 1 (best) BASIC28.31■■■□□ 2.12
COL15A1P39059 AL021707.1-201ENST00000416406 500 ntTSL 3 BASIC28.31■■■□□ 2.12
COL15A1P39059 ADIPOR1-201ENST00000340990 2177 ntAPPRIS P1 TSL 1 (best) BASIC28.31■■■□□ 2.12
COL15A1P39059 LINC00969-219ENST00000453324 1439 ntTSL 1 (best) BASIC28.31■■■□□ 2.12
COL15A1P39059 LINC01529-204ENST00000636474 1715 ntBASIC28.31■■■□□ 2.12
COL15A1P39059 TMEM121-201ENST00000392519 1532 ntAPPRIS P1 TSL 1 (best) BASIC28.3■■■□□ 2.12
COL15A1P39059 STX4-202ENST00000394998 1498 ntTSL 2 BASIC28.3■■■□□ 2.12
COL15A1P39059 UBE2D3-201ENST00000321805 1087 ntAPPRIS ALT1 TSL 5 BASIC28.3■■■□□ 2.12
COL15A1P39059 PHLDA3-201ENST00000367309 896 ntAPPRIS P1 TSL 5 BASIC28.3■■■□□ 2.12
COL15A1P39059 MPRIP-203ENST00000395806 527 ntTSL 3 BASIC28.3■■■□□ 2.12
COL15A1P39059 IDNK-204ENST00000454393 1210 ntTSL 3 BASIC28.3■■■□□ 2.12
COL15A1P39059 TPRG1LP1-201ENST00000598702 760 ntBASIC28.3■■■□□ 2.12
COL15A1P39059 PON2-202ENST00000433091 1726 ntTSL 1 (best) BASIC28.3■■■□□ 2.12
COL15A1P39059 ERI3-201ENST00000372257 1684 ntAPPRIS P1 TSL 1 (best) BASIC28.3■■■□□ 2.12
COL15A1P39059 TRIM14-202ENST00000342043 1479 ntAPPRIS P1 TSL 1 (best) BASIC28.29■■■□□ 2.12
COL15A1P39059 BOP1-205ENST00000569669 2303 ntAPPRIS P1 TSL 1 (best) BASIC28.29■■■□□ 2.12
COL15A1P39059 PRMT5-213ENST00000553897 1857 ntTSL 2 BASIC28.29■■■□□ 2.12
Retrieved 100 of 98,524 protein–RNA pairs in 41.6 ms