Protein–RNA interactions for Protein: Q8TCU4

ALMS1, Alstrom syndrome protein 1, humanhuman

Predictions only

Length 4,167 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ALMS1Q8TCU4 AL137779.2-201ENST00000554859 448 ntTSL 2 BASIC15.33■□□□□ 0.04
ALMS1Q8TCU4 AC105233.4-201ENST00000642045 216 ntBASIC15.33■□□□□ 0.04
ALMS1Q8TCU4 MT1M-201ENST00000379818 829 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
ALMS1Q8TCU4 LRRC24-202ENST00000533758 1701 ntAPPRIS ALT2 TSL 5 BASIC15.32■□□□□ 0.04
ALMS1Q8TCU4 CCDC115-202ENST00000409127 1247 ntTSL 2 BASIC15.32■□□□□ 0.04
ALMS1Q8TCU4 POLR2H-208ENST00000456318 1802 ntAPPRIS P1 TSL 5 BASIC15.32■□□□□ 0.04
ALMS1Q8TCU4 HMGA2-205ENST00000425208 1444 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
ALMS1Q8TCU4 RASSF5-204ENST00000580449 1932 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
ALMS1Q8TCU4 MRPL10-202ENST00000351111 1725 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
ALMS1Q8TCU4 ALKBH7-201ENST00000245812 1332 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
ALMS1Q8TCU4 MCHR1-202ENST00000381433 1219 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
ALMS1Q8TCU4 JDP2-202ENST00000419727 972 ntAPPRIS P1 TSL 2 BASIC15.32■□□□□ 0.04
ALMS1Q8TCU4 KRT18P11-201ENST00000435214 1283 ntBASIC15.32■□□□□ 0.04
ALMS1Q8TCU4 AC012313.6-201ENST00000599889 790 ntTSL 3 BASIC15.32■□□□□ 0.04
ALMS1Q8TCU4 MESP2-201ENST00000341735 1552 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
ALMS1Q8TCU4 CNIH2-201ENST00000311445 1356 ntAPPRIS P2 TSL 1 (best) BASIC15.32■□□□□ 0.04
ALMS1Q8TCU4 TRIM14-202ENST00000342043 1479 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
ALMS1Q8TCU4 GABARAPL2-205ENST00000568455 646 ntTSL 3 BASIC15.32■□□□□ 0.04
ALMS1Q8TCU4 SLC35A2-201ENST00000247138 1672 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
ALMS1Q8TCU4 RAB28-203ENST00000338176 1787 ntTSL 3 BASIC15.31■□□□□ 0.04
ALMS1Q8TCU4 NFS1-201ENST00000306750 738 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
ALMS1Q8TCU4 MFSD14C-203ENST00000602917 786 ntAPPRIS P5 TSL 1 (best) BASIC15.31■□□□□ 0.04
ALMS1Q8TCU4 PPAN-201ENST00000253107 1657 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
ALMS1Q8TCU4 AC142086.6-201ENST00000621154 1765 ntBASIC15.31■□□□□ 0.04
ALMS1Q8TCU4 EFEMP2-201ENST00000307998 2034 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
ALMS1Q8TCU4 PLSCR3-209ENST00000574401 2032 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
ALMS1Q8TCU4 SIMC1-204ENST00000430704 1925 ntAPPRIS P3 TSL 2 BASIC15.31■□□□□ 0.04
ALMS1Q8TCU4 RASEF-201ENST00000340717 1765 ntTSL 2 BASIC15.31■□□□□ 0.04
ALMS1Q8TCU4 THRA-204ENST00000546243 1909 ntAPPRIS P1 TSL 2 BASIC15.31■□□□□ 0.04
ALMS1Q8TCU4 ZNF292-204ENST00000392985 1096 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
ALMS1Q8TCU4 AC069152.1-201ENST00000438030 544 ntBASIC15.31■□□□□ 0.04
ALMS1Q8TCU4 LINC02228-203ENST00000641970 1355 ntBASIC15.31■□□□□ 0.04
ALMS1Q8TCU4 MADCAM1-206ENST00000617201 1491 ntAPPRIS ALT2 TSL 5 BASIC15.3■□□□□ 0.04
ALMS1Q8TCU4 MADCAM1-207ENST00000619333 1485 ntAPPRIS ALT2 TSL 5 BASIC15.3■□□□□ 0.04
ALMS1Q8TCU4 MADCAM1-210ENST00000622462 1461 ntAPPRIS ALT2 TSL 5 BASIC15.3■□□□□ 0.04
ALMS1Q8TCU4 SLC10A4-201ENST00000273861 1790 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
ALMS1Q8TCU4 TBXA2R-202ENST00000411851 1494 ntTSL 2 BASIC15.3■□□□□ 0.04
ALMS1Q8TCU4 DET1-205ENST00000558413 583 ntTSL 4 BASIC15.3■□□□□ 0.04
ALMS1Q8TCU4 SMOX-203ENST00000339123 2074 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
ALMS1Q8TCU4 SLC25A6-201ENST00000381401 2062 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
ALMS1Q8TCU4 TRIM72-202ENST00000613872 1573 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
ALMS1Q8TCU4 SPPL2B-211ENST00000614794 1559 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
ALMS1Q8TCU4 AP004607.4-201ENST00000530158 1459 ntBASIC15.3■□□□□ 0.04
ALMS1Q8TCU4 SPIRE2-205ENST00000563972 1823 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
ALMS1Q8TCU4 RPS6-203ENST00000380384 1355 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
ALMS1Q8TCU4 MT3-201ENST00000200691 569 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
ALMS1Q8TCU4 ARHGAP24-206ENST00000503995 1273 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
ALMS1Q8TCU4 ZNF503-AS2-201ENST00000425916 2026 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
ALMS1Q8TCU4 LHPP-201ENST00000368839 1522 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
ALMS1Q8TCU4 AC011511.3-201ENST00000587088 355 ntTSL 2 BASIC15.29■□□□□ 0.04
ALMS1Q8TCU4 CT47A12-201ENST00000419982 1165 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
ALMS1Q8TCU4 VGLL4-208ENST00000424529 1025 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
ALMS1Q8TCU4 ARF3-202ENST00000447318 1089 ntTSL 2 BASIC15.29■□□□□ 0.04
ALMS1Q8TCU4 WT1-210ENST00000639563 1494 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
ALMS1Q8TCU4 RAB24-202ENST00000303270 1385 ntTSL 2 BASIC15.29■□□□□ 0.04
ALMS1Q8TCU4 TMEM218-201ENST00000279968 1034 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
ALMS1Q8TCU4 PGPEP1L-201ENST00000378919 995 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
ALMS1Q8TCU4 AGAP1-IT1-201ENST00000440498 664 ntTSL 3 BASIC15.29■□□□□ 0.04
ALMS1Q8TCU4 ZNF561-AS1-205ENST00000588765 579 ntTSL 4 BASIC15.29■□□□□ 0.04
ALMS1Q8TCU4 IDH2-202ENST00000540499 1453 ntTSL 2 BASIC15.29■□□□□ 0.04
ALMS1Q8TCU4 TSPOAP1-AS1-203ENST00000579527 2042 ntTSL 2 BASIC15.29■□□□□ 0.04
ALMS1Q8TCU4 RAP1B-207ENST00000450214 1466 ntTSL 2 BASIC15.28■□□□□ 0.04
ALMS1Q8TCU4 RARA-AS1-201ENST00000581080 1790 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
ALMS1Q8TCU4 CLK2-203ENST00000368361 2166 ntAPPRIS ALT1 TSL 1 (best) BASIC15.28■□□□□ 0.04
ALMS1Q8TCU4 ZNF517-207ENST00000531720 1615 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
ALMS1Q8TCU4 EMID1-203ENST00000404820 2118 ntTSL 5 BASIC15.28■□□□□ 0.04
ALMS1Q8TCU4 HAGH-201ENST00000397353 1257 ntAPPRIS ALT1 TSL 5 BASIC15.28■□□□□ 0.04
ALMS1Q8TCU4 AP000282.1-201ENST00000454622 682 ntTSL 2 BASIC15.28■□□□□ 0.04
ALMS1Q8TCU4 SLC6A10P-202ENST00000431994 2058 ntBASIC15.28■□□□□ 0.04
ALMS1Q8TCU4 FNDC3B-204ENST00000421757 946 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
ALMS1Q8TCU4 MAZ-216ENST00000616501 991 ntTSL 5 BASIC15.28■□□□□ 0.04
ALMS1Q8TCU4 SHMT1-203ENST00000354098 1656 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
ALMS1Q8TCU4 POLR3GL-201ENST00000369313 818 ntTSL 2 BASIC15.27■□□□□ 0.04
ALMS1Q8TCU4 CCDC85B-201ENST00000312579 1524 ntAPPRIS P1 BASIC15.27■□□□□ 0.04
ALMS1Q8TCU4 SLC25A39-201ENST00000225308 1607 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.04
ALMS1Q8TCU4 FUT11-202ENST00000394790 2175 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
ALMS1Q8TCU4 C7orf25-206ENST00000447342 1823 ntTSL 2 BASIC15.27■□□□□ 0.04
ALMS1Q8TCU4 AC092675.2-201ENST00000413274 541 ntTSL 4 BASIC15.27■□□□□ 0.03
ALMS1Q8TCU4 SPI1-203ENST00000533030 661 ntTSL 2 BASIC15.27■□□□□ 0.03
ALMS1Q8TCU4 FUT11-201ENST00000372841 2056 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
ALMS1Q8TCU4 CDC16-211ENST00000628084 2058 ntTSL 5 BASIC15.27■□□□□ 0.03
ALMS1Q8TCU4 TMPO-201ENST00000261210 820 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
ALMS1Q8TCU4 SLC26A1-203ENST00000398520 1111 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
ALMS1Q8TCU4 FADS3-204ENST00000525588 1254 ntTSL 5 BASIC15.27■□□□□ 0.03
ALMS1Q8TCU4 RPS15-210ENST00000592623 873 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
ALMS1Q8TCU4 ZNF174-202ENST00000344823 1557 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
ALMS1Q8TCU4 SHD-204ENST00000599689 1729 ntTSL 5 BASIC15.27■□□□□ 0.03
ALMS1Q8TCU4 PSMG1-201ENST00000331573 2154 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
ALMS1Q8TCU4 PACRGL-208ENST00000503585 1582 ntAPPRIS P1 TSL 2 BASIC15.26■□□□□ 0.03
ALMS1Q8TCU4 HDGFL1-201ENST00000510882 2174 ntAPPRIS P1 BASIC15.26■□□□□ 0.03
ALMS1Q8TCU4 TRAPPC2L-213ENST00000567895 854 ntTSL 3 BASIC15.26■□□□□ 0.03
ALMS1Q8TCU4 BIN1-204ENST00000348750 2074 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
ALMS1Q8TCU4 ARIH2OS-201ENST00000408959 1598 ntAPPRIS P1 BASIC15.26■□□□□ 0.03
ALMS1Q8TCU4 RASL12-202ENST00000421977 1523 ntTSL 2 BASIC15.26■□□□□ 0.03
ALMS1Q8TCU4 TBCB-214ENST00000629269 413 ntTSL 5 BASIC15.26■□□□□ 0.03
ALMS1Q8TCU4 SLC35A3-218ENST00000639994 1114 ntTSL 5 BASIC15.26■□□□□ 0.03
ALMS1Q8TCU4 ZDHHC16-203ENST00000353979 1647 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
ALMS1Q8TCU4 RAMP1-203ENST00000404910 857 ntTSL 2 BASIC15.26■□□□□ 0.03
ALMS1Q8TCU4 KRT19P1-201ENST00000405746 1186 ntBASIC15.26■□□□□ 0.03
ALMS1Q8TCU4 LTB-211ENST00000446745 853 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 72.9 ms