Protein–RNA interactions for Protein: P55347

PKNOX1, Homeobox protein PKNOX1, humanhuman

Predictions only

Length 436 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX1P55347 MRGPRF-203ENST00000441623 2282 ntAPPRIS P1 TSL 2 BASIC21.82■■□□□ 1.08
PKNOX1P55347 KCNQ4-204ENST00000509682 1926 ntAPPRIS ALT2 TSL 5 BASIC21.82■■□□□ 1.08
PKNOX1P55347 DISC1-223ENST00000628350 2363 ntAPPRIS ALT2 TSL 1 (best) BASIC21.82■■□□□ 1.08
PKNOX1P55347 USP48-205ENST00000421625 2818 ntTSL 2 BASIC21.82■■□□□ 1.08
PKNOX1P55347 HNRNPM-202ENST00000348943 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC21.82■■□□□ 1.08
PKNOX1P55347 PDIA2-201ENST00000219406 1698 ntAPPRIS P2 TSL 1 (best) BASIC21.82■■□□□ 1.08
PKNOX1P55347 GCA-201ENST00000233612 1694 ntTSL 2 BASIC21.82■■□□□ 1.08
PKNOX1P55347 TPM4-201ENST00000300933 2666 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
PKNOX1P55347 CRLF1-201ENST00000392386 1792 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
PKNOX1P55347 UROS-204ENST00000368797 1313 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
PKNOX1P55347 LSR-203ENST00000360798 1963 ntTSL 2 BASIC21.81■■□□□ 1.08
PKNOX1P55347 HMGA2-203ENST00000393578 1993 ntAPPRIS ALT1 TSL 1 (best) BASIC21.81■■□□□ 1.08
PKNOX1P55347 STK32C-201ENST00000298630 2086 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
PKNOX1P55347 SPG21-202ENST00000416889 1533 ntTSL 2 BASIC21.81■■□□□ 1.08
PKNOX1P55347 AL117348.2-201ENST00000432920 1625 ntAPPRIS P1 TSL 2 BASIC21.81■■□□□ 1.08
PKNOX1P55347 APOE-201ENST00000252486 1208 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
PKNOX1P55347 AC064853.4-201ENST00000641394 363 ntAPPRIS P1 BASIC21.81■■□□□ 1.08
PKNOX1P55347 GUSB-201ENST00000304895 2300 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
PKNOX1P55347 C7orf49-203ENST00000430372 1579 ntTSL 5 BASIC21.81■■□□□ 1.08
PKNOX1P55347 TSNARE1-208ENST00000524325 1963 ntAPPRIS P3 TSL 2 BASIC21.81■■□□□ 1.08
PKNOX1P55347 PRRX2-201ENST00000372469 1311 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
PKNOX1P55347 NRSN1-204ENST00000378491 2354 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
PKNOX1P55347 WWC2-AS2-201ENST00000578387 2183 ntBASIC21.8■■□□□ 1.08
PKNOX1P55347 PROSER2-202ENST00000379200 1232 ntAPPRIS ALT2 BASIC21.8■■□□□ 1.08
PKNOX1P55347 YBX1P4-201ENST00000392794 808 ntBASIC21.8■■□□□ 1.08
PKNOX1P55347 HABP4-201ENST00000375249 2615 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
PKNOX1P55347 FARP2-223ENST00000627550 2122 ntTSL 2 BASIC21.8■■□□□ 1.08
PKNOX1P55347 MMP21-201ENST00000368808 1919 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
PKNOX1P55347 TRIM28-201ENST00000253024 2960 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
PKNOX1P55347 LIMS2-202ENST00000355119 2045 ntAPPRIS ALT1 TSL 1 (best) BASIC21.79■■□□□ 1.08
PKNOX1P55347 AKT2-234ENST00000579047 2029 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
PKNOX1P55347 NAE1-202ENST00000359087 1825 ntTSL 2 BASIC21.79■■□□□ 1.08
PKNOX1P55347 LINC01770-201ENST00000417917 634 ntTSL 2 BASIC21.79■■□□□ 1.08
PKNOX1P55347 AC103724.3-201ENST00000564481 992 ntBASIC21.79■■□□□ 1.08
PKNOX1P55347 SEC11C-204ENST00000587834 1202 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
PKNOX1P55347 SNX5-217ENST00000606557 1087 ntBASIC21.79■■□□□ 1.08
PKNOX1P55347 SH2D3A-201ENST00000245908 2296 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
PKNOX1P55347 EPS8L1-202ENST00000245618 2198 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
PKNOX1P55347 FOXJ1-201ENST00000322957 2641 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
PKNOX1P55347 USF2-207ENST00000595068 1612 ntTSL 5 BASIC21.79■■□□□ 1.08
PKNOX1P55347 RAD9A-201ENST00000307980 2119 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
PKNOX1P55347 TRAM2-AS1-204ENST00000606714 2453 ntTSL 2 BASIC21.79■■□□□ 1.08
PKNOX1P55347 FAM171A2-201ENST00000293443 3160 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
PKNOX1P55347 HNRNPD-202ENST00000352301 1667 ntAPPRIS ALT1 TSL 1 (best) BASIC21.79■■□□□ 1.08
PKNOX1P55347 ANKHD1-204ENST00000394722 2035 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
PKNOX1P55347 PLK5-202ENST00000454744 1930 ntAPPRIS P2 TSL 2 BASIC21.78■■□□□ 1.08
PKNOX1P55347 MATK-203ENST00000395045 2073 ntAPPRIS P4 TSL 2 BASIC21.78■■□□□ 1.08
PKNOX1P55347 NPHS2-201ENST00000367615 1855 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
PKNOX1P55347 IGFBP6-201ENST00000301464 1169 ntAPPRIS P2 TSL 1 (best) BASIC21.78■■□□□ 1.08
PKNOX1P55347 MCRIP1-202ENST00000457257 942 ntTSL 3 BASIC21.78■■□□□ 1.08
PKNOX1P55347 EIF3J-203ENST00000535391 925 ntTSL 2 BASIC21.78■■□□□ 1.08
PKNOX1P55347 DPEP2-204ENST00000572888 2112 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
PKNOX1P55347 HNRNPUL1-221ENST00000617305 1018 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
PKNOX1P55347 CADM1-201ENST00000331581 1766 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
PKNOX1P55347 GAL3ST1-202ENST00000401975 1791 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
PKNOX1P55347 DNAJC25-GNG10-201ENST00000374294 1448 ntAPPRIS P1 TSL 2 BASIC21.78■■□□□ 1.08
PKNOX1P55347 SLC29A1-207ENST00000393841 2485 ntAPPRIS P1 TSL 2 BASIC21.78■■□□□ 1.08
PKNOX1P55347 CRHR1-201ENST00000293493 2621 ntTSL 5 BASIC21.77■■□□□ 1.08
PKNOX1P55347 BSN-AS2-201ENST00000421598 2603 ntTSL 2 BASIC21.77■■□□□ 1.08
PKNOX1P55347 HAR1A-201ENST00000433161 1882 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
PKNOX1P55347 NEUROG3-201ENST00000242462 1376 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
PKNOX1P55347 IRX2-201ENST00000302057 2456 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
PKNOX1P55347 AC064853.3-201ENST00000641801 1658 ntAPPRIS P1 BASIC21.77■■□□□ 1.08
PKNOX1P55347 CTDSP2-203ENST00000547701 988 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
PKNOX1P55347 SNAI3-AS1-203ENST00000565633 829 ntTSL 5 BASIC21.77■■□□□ 1.08
PKNOX1P55347 DNM2-205ENST00000585892 2774 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
PKNOX1P55347 ADD1-202ENST00000355842 4743 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
PKNOX1P55347 BX088645.1-201ENST00000636699 1728 ntAPPRIS P1 TSL 5 BASIC21.77■■□□□ 1.08
PKNOX1P55347 HTRA2-202ENST00000352222 1450 ntTSL 1 (best) BASIC21.77■■□□□ 1.07
PKNOX1P55347 AC007375.3-201ENST00000600936 2314 ntBASIC21.77■■□□□ 1.07
PKNOX1P55347 SMG7-AS1-201ENST00000421703 2220 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
PKNOX1P55347 REST-206ENST00000612429 1376 ntTSL 5 BASIC21.76■■□□□ 1.07
PKNOX1P55347 REST-207ENST00000616975 1370 ntTSL 5 BASIC21.76■■□□□ 1.07
PKNOX1P55347 REST-212ENST00000640343 1352 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
PKNOX1P55347 PPP5C-201ENST00000012443 2109 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
PKNOX1P55347 ZNF428-201ENST00000300811 1412 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
PKNOX1P55347 CNPY3-202ENST00000394142 954 ntTSL 5 BASIC21.76■■□□□ 1.07
PKNOX1P55347 KRTAP5-5-201ENST00000399676 933 ntAPPRIS P1 BASIC21.76■■□□□ 1.07
PKNOX1P55347 ARIH2OS-201ENST00000408959 1598 ntAPPRIS P1 BASIC21.76■■□□□ 1.07
PKNOX1P55347 TK2-202ENST00000417693 1046 ntTSL 2 BASIC21.76■■□□□ 1.07
PKNOX1P55347 ALDH16A1-202ENST00000455361 2470 ntTSL 2 BASIC21.76■■□□□ 1.07
PKNOX1P55347 KCTD5-202ENST00000564195 774 ntTSL 5 BASIC21.76■■□□□ 1.07
PKNOX1P55347 TK2-216ENST00000564917 1156 ntTSL 3 BASIC21.76■■□□□ 1.07
PKNOX1P55347 CCDC106-205ENST00000588740 1404 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
PKNOX1P55347 AC137630.3-201ENST00000607245 391 ntBASIC21.76■■□□□ 1.07
PKNOX1P55347 SLC25A27-202ENST00000411689 2526 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
PKNOX1P55347 VGF-202ENST00000445482 2477 ntAPPRIS P1 TSL 5 BASIC21.75■■□□□ 1.07
PKNOX1P55347 NBL1-202ENST00000375136 2172 ntAPPRIS P3 TSL 1 (best) BASIC21.75■■□□□ 1.07
PKNOX1P55347 LMLN-210ENST00000482695 2010 ntAPPRIS ALT2 TSL 1 (best) BASIC21.75■■□□□ 1.07
PKNOX1P55347 TEAD1-206ENST00000527636 2544 ntAPPRIS ALT2 TSL 1 (best) BASIC21.75■■□□□ 1.07
PKNOX1P55347 ECEL1P1-201ENST00000373592 1742 ntBASIC21.75■■□□□ 1.07
PKNOX1P55347 VGLL2-201ENST00000326274 2212 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
PKNOX1P55347 CACNB3-205ENST00000547392 2237 ntTSL 5 BASIC21.75■■□□□ 1.07
PKNOX1P55347 KRT8P33-201ENST00000508125 1423 ntBASIC21.75■■□□□ 1.07
PKNOX1P55347 AC093390.2-201ENST00000638628 1007 ntTSL 5 BASIC21.75■■□□□ 1.07
PKNOX1P55347 CREB3L3-205ENST00000602257 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC21.75■■□□□ 1.07
PKNOX1P55347 BCS1L-210ENST00000431802 2015 ntAPPRIS P1 TSL 2 BASIC21.75■■□□□ 1.07
PKNOX1P55347 GNA11-201ENST00000078429 4147 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
PKNOX1P55347 AC127496.7-201ENST00000625110 1798 ntBASIC21.74■■□□□ 1.07
PKNOX1P55347 LINC01140-202ENST00000467438 2375 ntTSL 2 BASIC21.74■■□□□ 1.07
Retrieved 100 of 98,524 protein–RNA pairs in 42.6 ms