Protein–RNA interactions for Protein: O15379

HDAC3, Histone deacetylase 3, humanhuman

Predictions only

Length 428 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3O15379 AC092807.3-205ENST00000467666 531 ntTSL 3 BASIC21.73■■□□□ 1.07
HDAC3O15379 EPHA10-211ENST00000540011 720 ntTSL 5 BASIC21.73■■□□□ 1.07
HDAC3O15379 MMP25-AS1-209ENST00000576250 779 ntTSL 5 BASIC21.73■■□□□ 1.07
HDAC3O15379 VGF-202ENST00000445482 2477 ntAPPRIS P1 TSL 5 BASIC21.73■■□□□ 1.07
HDAC3O15379 ABCG4-204ENST00000615496 2459 ntAPPRIS P1 TSL 2 BASIC21.73■■□□□ 1.07
HDAC3O15379 PSPH-202ENST00000395471 2178 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
HDAC3O15379 DMPK-220ENST00000618091 2503 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
HDAC3O15379 NEURL4-202ENST00000399464 5200 ntAPPRIS P4 TSL 1 (best) BASIC21.72■■□□□ 1.07
HDAC3O15379 TMEM171-202ENST00000454765 1535 ntAPPRIS P3 TSL 1 (best) BASIC21.72■■□□□ 1.07
HDAC3O15379 GSX2-201ENST00000326902 1812 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
HDAC3O15379 C11orf96-202ENST00000528572 1834 ntBASIC21.72■■□□□ 1.07
HDAC3O15379 NOX4-204ENST00000393282 560 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
HDAC3O15379 MTX2-204ENST00000443241 799 ntTSL 3 BASIC21.72■■□□□ 1.07
HDAC3O15379 AC139795.1-203ENST00000515045 853 ntTSL 2 BASIC21.72■■□□□ 1.07
HDAC3O15379 SLC25A47-202ENST00000557052 1552 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
HDAC3O15379 IL15RA-204ENST00000379977 1626 ntAPPRIS P3 TSL 1 (best) BASIC21.72■■□□□ 1.07
HDAC3O15379 HNRNPD-202ENST00000352301 1667 ntAPPRIS ALT1 TSL 1 (best) BASIC21.72■■□□□ 1.07
HDAC3O15379 KEAP1-202ENST00000393623 2648 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
HDAC3O15379 MTERF3-201ENST00000287025 1409 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
HDAC3O15379 FAM66C-208ENST00000541558 2087 ntTSL 2 BASIC21.71■■□□□ 1.07
HDAC3O15379 ZC3H14-219ENST00000556945 2075 ntTSL 5 BASIC21.71■■□□□ 1.07
HDAC3O15379 AKT1S1-206ENST00000391834 1849 ntAPPRIS P1 TSL 5 BASIC21.71■■□□□ 1.07
HDAC3O15379 HSD11B1L-217ENST00000581521 1884 ntAPPRIS P3 TSL 5 BASIC21.71■■□□□ 1.07
HDAC3O15379 TSNARE1-208ENST00000524325 1963 ntAPPRIS P3 TSL 2 BASIC21.71■■□□□ 1.07
HDAC3O15379 KCNT1-201ENST00000263604 5245 ntAPPRIS ALT2 TSL 5 BASIC21.71■■□□□ 1.07
HDAC3O15379 AC005551.1-201ENST00000641816 493 ntAPPRIS P1 BASIC21.71■■□□□ 1.07
HDAC3O15379 EN1-201ENST00000295206 2457 ntAPPRIS P1 TSL 2 BASIC21.71■■□□□ 1.07
HDAC3O15379 ALDH16A1-202ENST00000455361 2470 ntTSL 2 BASIC21.71■■□□□ 1.07
HDAC3O15379 TLX2-201ENST00000233638 2136 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
HDAC3O15379 ARL13B-205ENST00000471138 2206 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
HDAC3O15379 ST7L-201ENST00000343210 1866 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
HDAC3O15379 MXRA7-201ENST00000355797 5661 ntAPPRIS P4 TSL 2 BASIC21.71■■□□□ 1.07
HDAC3O15379 ARIH2OS-201ENST00000408959 1598 ntAPPRIS P1 BASIC21.7■■□□□ 1.06
HDAC3O15379 AF131216.4-201ENST00000638924 1588 ntBASIC21.7■■□□□ 1.06
HDAC3O15379 AC064853.3-201ENST00000641801 1658 ntAPPRIS P1 BASIC21.7■■□□□ 1.06
HDAC3O15379 BIN1-209ENST00000393040 2293 ntAPPRIS ALT2 TSL 1 (best) BASIC21.7■■□□□ 1.06
HDAC3O15379 CTGF-201ENST00000367976 2339 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
HDAC3O15379 UTS2R-201ENST00000313135 1357 ntAPPRIS P1 BASIC21.7■■□□□ 1.06
HDAC3O15379 MPST-202ENST00000397225 2116 ntAPPRIS P1 TSL 2 BASIC21.7■■□□□ 1.06
HDAC3O15379 RANBP10-202ENST00000448631 2232 ntTSL 2 BASIC21.7■■□□□ 1.06
HDAC3O15379 FAR2P4-203ENST00000560285 1739 ntTSL 2 BASIC21.69■■□□□ 1.06
HDAC3O15379 GPR27-201ENST00000304411 2447 ntAPPRIS P1 BASIC21.69■■□□□ 1.06
HDAC3O15379 ASPSCR1-208ENST00000580534 1776 ntTSL 2 BASIC21.69■■□□□ 1.06
HDAC3O15379 VSX1-205ENST00000429762 1977 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
HDAC3O15379 USP48-205ENST00000421625 2818 ntTSL 2 BASIC21.69■■□□□ 1.06
HDAC3O15379 GPR137B-202ENST00000366592 2042 ntAPPRIS P2 TSL 1 (best) BASIC21.69■■□□□ 1.06
HDAC3O15379 RARRES2P2-201ENST00000394842 485 ntBASIC21.69■■□□□ 1.06
HDAC3O15379 IFI30-201ENST00000407280 1134 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
HDAC3O15379 CNEP1R1-202ENST00000427478 2117 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
HDAC3O15379 AC004448.1-201ENST00000458332 883 ntBASIC21.69■■□□□ 1.06
HDAC3O15379 AC120024.1-201ENST00000562672 995 ntBASIC21.69■■□□□ 1.06
HDAC3O15379 R3HCC1-202ENST00000411463 1467 ntAPPRIS P5 TSL 5 BASIC21.69■■□□□ 1.06
HDAC3O15379 SPG21-202ENST00000416889 1533 ntTSL 2 BASIC21.69■■□□□ 1.06
HDAC3O15379 INPPL1-201ENST00000298229 4733 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
HDAC3O15379 HABP4-201ENST00000375249 2615 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
HDAC3O15379 AL117348.2-201ENST00000432920 1625 ntAPPRIS P1 TSL 2 BASIC21.69■■□□□ 1.06
HDAC3O15379 TRIM54-202ENST00000380075 1967 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
HDAC3O15379 CDKN1C-202ENST00000414822 2051 ntAPPRIS P3 TSL 1 (best) BASIC21.68■■□□□ 1.06
HDAC3O15379 PLPP5-203ENST00000424479 2130 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
HDAC3O15379 LINC01140-202ENST00000467438 2375 ntTSL 2 BASIC21.68■■□□□ 1.06
HDAC3O15379 SERPINB5-201ENST00000382771 2783 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
HDAC3O15379 KRT18P60-201ENST00000312876 1297 ntBASIC21.68■■□□□ 1.06
HDAC3O15379 UROS-204ENST00000368797 1313 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
HDAC3O15379 C7orf25-203ENST00000431882 1645 ntTSL 2 BASIC21.68■■□□□ 1.06
HDAC3O15379 GADD45GIP1-201ENST00000316939 1782 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
HDAC3O15379 BID-212ENST00000614949 1988 ntTSL 5 BASIC21.68■■□□□ 1.06
HDAC3O15379 RITA1-202ENST00000549621 2041 ntAPPRIS P1 TSL 2 BASIC21.68■■□□□ 1.06
HDAC3O15379 RASSF5-202ENST00000579436 2064 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
HDAC3O15379 CRHR1-202ENST00000314537 2535 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
HDAC3O15379 LSM14B-201ENST00000279068 2548 ntAPPRIS P1 TSL 5 BASIC21.67■■□□□ 1.06
HDAC3O15379 P4HTM-201ENST00000343546 2268 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
HDAC3O15379 GABBR2-201ENST00000259455 5788 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
HDAC3O15379 PHF11-202ENST00000378319 1359 ntAPPRIS P3 TSL 1 (best) BASIC21.67■■□□□ 1.06
HDAC3O15379 LIME1-206ENST00000487026 805 ntAPPRIS ALT2 TSL 5 BASIC21.67■■□□□ 1.06
HDAC3O15379 DNM2-205ENST00000585892 2774 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
HDAC3O15379 KCNK15-201ENST00000372861 2599 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
HDAC3O15379 TMEM9B-205ENST00000534025 2083 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
HDAC3O15379 PDLIM2-216ENST00000464275 1995 ntTSL 2 BASIC21.67■■□□□ 1.06
HDAC3O15379 AC080038.3-201ENST00000623346 1952 ntBASIC21.67■■□□□ 1.06
HDAC3O15379 AP004608.1-202ENST00000533390 1863 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
HDAC3O15379 SYNGR3-202ENST00000562045 1743 ntTSL 2 BASIC21.66■■□□□ 1.06
HDAC3O15379 USF2-207ENST00000595068 1612 ntTSL 5 BASIC21.66■■□□□ 1.06
HDAC3O15379 SDHAF1-201ENST00000378887 1117 ntAPPRIS P1 BASIC21.66■■□□□ 1.06
HDAC3O15379 C5orf38-202ENST00000397835 681 ntAPPRIS ALT2 TSL 5 BASIC21.66■■□□□ 1.06
HDAC3O15379 AC139795.1-202ENST00000500444 432 ntBASIC21.66■■□□□ 1.06
HDAC3O15379 GPRC5B-202ENST00000535671 1215 ntAPPRIS ALT2 TSL 1 (best) BASIC21.66■■□□□ 1.06
HDAC3O15379 NRL-203ENST00000397002 1976 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
HDAC3O15379 CCDC38-201ENST00000344280 2277 ntAPPRIS P2 TSL 1 (best) BASIC21.66■■□□□ 1.06
HDAC3O15379 TMEM230-205ENST00000379279 1636 ntAPPRIS P1 TSL 2 BASIC21.66■■□□□ 1.06
HDAC3O15379 CXCL14-201ENST00000337225 1971 ntAPPRIS P2 TSL 1 (best) BASIC21.65■■□□□ 1.06
HDAC3O15379 HEXB-201ENST00000261416 1901 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
HDAC3O15379 RNF149-201ENST00000295317 2458 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
HDAC3O15379 ERFE-207ENST00000546354 1065 ntAPPRIS P2 TSL 1 (best) BASIC21.65■■□□□ 1.06
HDAC3O15379 BSN-AS2-201ENST00000421598 2603 ntTSL 2 BASIC21.65■■□□□ 1.06
HDAC3O15379 CACNG8-201ENST00000270458 8747 ntAPPRIS ALT2 TSL 1 (best) BASIC21.65■■□□□ 1.06
HDAC3O15379 SIMC1-202ENST00000341199 2056 ntAPPRIS P3 TSL 2 BASIC21.65■■□□□ 1.06
HDAC3O15379 CBLN3-201ENST00000267406 2346 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
HDAC3O15379 STEAP2-207ENST00000402625 1372 ntTSL 5 BASIC21.64■■□□□ 1.06
HDAC3O15379 IRX2-201ENST00000302057 2456 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
HDAC3O15379 JAGN1-201ENST00000307768 1693 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
Retrieved 100 of 98,524 protein–RNA pairs in 24.5 ms