Protein–RNA interactions for Protein: Q9Y5I3

PCDHA1, Protocadherin alpha-1, humanhuman

Predictions only

Length 950 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA1Q9Y5I3 DTNB-206ENST00000404103 2384 ntAPPRIS ALT2 TSL 5 BASIC25.76■■□□□ 1.71
PCDHA1Q9Y5I3 TMEM256-PLSCR3-204ENST00000573331 2557 ntAPPRIS P5 TSL 2 BASIC25.76■■□□□ 1.71
PCDHA1Q9Y5I3 AC079305.3-201ENST00000455416 218 ntTSL 5 BASIC25.76■■□□□ 1.71
PCDHA1Q9Y5I3 AC007009.1-201ENST00000458624 429 ntTSL 2 BASIC25.76■■□□□ 1.71
PCDHA1Q9Y5I3 CAMTA1-208ENST00000473578 567 ntTSL 1 (best) BASIC25.76■■□□□ 1.71
PCDHA1Q9Y5I3 NRIP3-203ENST00000531090 980 ntTSL 2 BASIC25.76■■□□□ 1.71
PCDHA1Q9Y5I3 SYT8-201ENST00000341958 1556 ntAPPRIS ALT2 TSL 5 BASIC25.76■■□□□ 1.71
PCDHA1Q9Y5I3 LINC01529-204ENST00000636474 1715 ntBASIC25.76■■□□□ 1.71
PCDHA1Q9Y5I3 R3HDM4-201ENST00000361574 1815 ntAPPRIS P1 TSL 1 (best) BASIC25.76■■□□□ 1.71
PCDHA1Q9Y5I3 CAMK2N1-201ENST00000375078 2336 ntAPPRIS P1 TSL 1 (best) BASIC25.76■■□□□ 1.71
PCDHA1Q9Y5I3 CCNG2-201ENST00000316355 5526 ntAPPRIS P1 TSL 1 (best) BASIC25.76■■□□□ 1.71
PCDHA1Q9Y5I3 PACS2-201ENST00000325438 3708 ntAPPRIS P1 TSL 1 (best) BASIC25.75■■□□□ 1.71
PCDHA1Q9Y5I3 OSCAR-209ENST00000616215 2016 ntAPPRIS ALT2 TSL 5 BASIC25.75■■□□□ 1.71
PCDHA1Q9Y5I3 TMEM102-201ENST00000323206 1973 ntAPPRIS P1 TSL 1 (best) BASIC25.75■■□□□ 1.71
PCDHA1Q9Y5I3 TMEM102-202ENST00000396568 1962 ntAPPRIS P1 TSL 2 BASIC25.75■■□□□ 1.71
PCDHA1Q9Y5I3 NR2F1-AS1-210ENST00000606739 1431 ntTSL 2 BASIC25.75■■□□□ 1.71
PCDHA1Q9Y5I3 MRPL41-201ENST00000371443 1262 ntAPPRIS P1 TSL 1 (best) BASIC25.75■■□□□ 1.71
PCDHA1Q9Y5I3 STOX1-202ENST00000399162 935 ntTSL 1 (best) BASIC25.75■■□□□ 1.71
PCDHA1Q9Y5I3 STOX1-203ENST00000399165 1135 ntTSL 1 (best) BASIC25.75■■□□□ 1.71
PCDHA1Q9Y5I3 DUX4L4-201ENST00000566884 1269 ntBASIC25.75■■□□□ 1.71
PCDHA1Q9Y5I3 SAP25-203ENST00000614631 987 ntAPPRIS P2 TSL 2 BASIC25.75■■□□□ 1.71
PCDHA1Q9Y5I3 NIPSNAP2-201ENST00000322090 1999 ntAPPRIS P1 TSL 1 (best) BASIC25.75■■□□□ 1.71
PCDHA1Q9Y5I3 HOXD9-201ENST00000249499 1870 ntAPPRIS P1 TSL 1 (best) BASIC25.74■■□□□ 1.71
PCDHA1Q9Y5I3 BSPRY-201ENST00000374183 2339 ntAPPRIS P1 TSL 1 (best) BASIC25.74■■□□□ 1.71
PCDHA1Q9Y5I3 FAM21EP-202ENST00000456967 2177 ntTSL 2 BASIC25.74■■□□□ 1.71
PCDHA1Q9Y5I3 AP006621.3-202ENST00000530083 765 ntTSL 3 BASIC25.74■■□□□ 1.71
PCDHA1Q9Y5I3 AF213884.3-201ENST00000563833 479 ntBASIC25.74■■□□□ 1.71
PCDHA1Q9Y5I3 AL136967.2-201ENST00000623968 743 ntBASIC25.74■■□□□ 1.71
PCDHA1Q9Y5I3 IQCJ-SCHIP1-202ENST00000460298 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC25.74■■□□□ 1.71
PCDHA1Q9Y5I3 AC079630.1-202ENST00000618127 1840 ntBASIC25.74■■□□□ 1.71
PCDHA1Q9Y5I3 KCTD15-207ENST00000589786 1625 ntAPPRIS P1 TSL 2 BASIC25.74■■□□□ 1.71
PCDHA1Q9Y5I3 SPON2-222ENST00000617421 2156 ntAPPRIS P1 TSL 5 BASIC25.73■■□□□ 1.71
PCDHA1Q9Y5I3 COMT-206ENST00000407537 1457 ntAPPRIS P3 TSL 5 BASIC25.73■■□□□ 1.71
PCDHA1Q9Y5I3 CAPN10-207ENST00000391984 2644 ntAPPRIS P2 TSL 1 (best) BASIC25.73■■□□□ 1.71
PCDHA1Q9Y5I3 PPP2R2C-203ENST00000382599 1807 ntAPPRIS P1 TSL 1 (best) BASIC25.73■■□□□ 1.71
PCDHA1Q9Y5I3 AP001330.3-201ENST00000520123 633 ntBASIC25.73■■□□□ 1.71
PCDHA1Q9Y5I3 AC007448.3-201ENST00000585193 689 ntTSL 2 BASIC25.73■■□□□ 1.71
PCDHA1Q9Y5I3 CBWD3-212ENST00000616550 721 ntTSL 2 BASIC25.73■■□□□ 1.71
PCDHA1Q9Y5I3 CBWD6-216ENST00000617933 721 ntTSL 3 BASIC25.73■■□□□ 1.71
PCDHA1Q9Y5I3 DVL1-201ENST00000378888 3239 ntAPPRIS ALT1 TSL 5 BASIC25.73■■□□□ 1.71
PCDHA1Q9Y5I3 TIMM50-201ENST00000314349 1612 ntAPPRIS P2 TSL 1 (best) BASIC25.73■■□□□ 1.71
PCDHA1Q9Y5I3 PKIB-204ENST00000368448 1561 ntAPPRIS P1 TSL 5 BASIC25.73■■□□□ 1.71
PCDHA1Q9Y5I3 H19-210ENST00000439725 1929 ntTSL 2 BASIC25.73■■□□□ 1.71
PCDHA1Q9Y5I3 CTSF-201ENST00000310325 2035 ntAPPRIS P1 TSL 1 (best) BASIC25.72■■□□□ 1.71
PCDHA1Q9Y5I3 ZDHHC16-205ENST00000370846 1280 ntTSL 3 BASIC25.72■■□□□ 1.71
PCDHA1Q9Y5I3 HYI-204ENST00000372432 1066 ntTSL 1 (best) BASIC25.72■■□□□ 1.71
PCDHA1Q9Y5I3 AC093249.6-202ENST00000568500 1142 ntTSL 2 BASIC25.72■■□□□ 1.71
PCDHA1Q9Y5I3 SLC25A5-AS1-202ENST00000445759 1616 ntTSL 1 (best) BASIC25.72■■□□□ 1.71
PCDHA1Q9Y5I3 TCP1-202ENST00000392168 1878 ntTSL 5 BASIC25.72■■□□□ 1.71
PCDHA1Q9Y5I3 C7orf26-202ENST00000359073 1762 ntTSL 1 (best) BASIC25.72■■□□□ 1.71
PCDHA1Q9Y5I3 SDSL-201ENST00000345635 1397 ntAPPRIS P1 TSL 1 (best) BASIC25.71■■□□□ 1.71
PCDHA1Q9Y5I3 NAE1-204ENST00000394074 1654 ntTSL 5 BASIC25.71■■□□□ 1.71
PCDHA1Q9Y5I3 HAGHL-212ENST00000564537 1667 ntTSL 2 BASIC25.71■■□□□ 1.71
PCDHA1Q9Y5I3 SEPT4-205ENST00000426861 1906 ntTSL 1 (best) BASIC25.71■■□□□ 1.71
PCDHA1Q9Y5I3 LKAAEAR1-201ENST00000302096 761 ntAPPRIS ALT2 TSL 2 BASIC25.71■■□□□ 1.71
PCDHA1Q9Y5I3 LKAAEAR1-202ENST00000308906 868 ntAPPRIS P2 TSL 1 (best) BASIC25.71■■□□□ 1.71
PCDHA1Q9Y5I3 STX10-202ENST00000343587 1128 ntTSL 1 (best) BASIC25.71■■□□□ 1.71
PCDHA1Q9Y5I3 EBPL-204ENST00000378272 766 ntTSL 3 BASIC25.71■■□□□ 1.71
PCDHA1Q9Y5I3 MIR939-201ENST00000401314 82 ntBASIC25.71■■□□□ 1.71
PCDHA1Q9Y5I3 AC096887.1-203ENST00000607203 768 ntAPPRIS ALT2 TSL 5 BASIC25.71■■□□□ 1.71
PCDHA1Q9Y5I3 FZD9-201ENST00000344575 2338 ntAPPRIS P1 BASIC25.71■■□□□ 1.71
PCDHA1Q9Y5I3 ACAD8-202ENST00000374752 1797 ntTSL 2 BASIC25.71■■□□□ 1.71
PCDHA1Q9Y5I3 ST7L-221ENST00000490067 1780 ntTSL 1 (best) BASIC25.71■■□□□ 1.71
PCDHA1Q9Y5I3 P2RX4-211ENST00000543171 1777 ntTSL 5 BASIC25.71■■□□□ 1.71
PCDHA1Q9Y5I3 DCAF15-201ENST00000254337 2278 ntAPPRIS P1 TSL 1 (best) BASIC25.71■■□□□ 1.71
PCDHA1Q9Y5I3 PLEKHA8-201ENST00000258679 2293 ntTSL 1 (best) BASIC25.71■■□□□ 1.71
PCDHA1Q9Y5I3 SOHLH1-201ENST00000298466 1987 ntAPPRIS P3 TSL 1 (best) BASIC25.71■■□□□ 1.71
PCDHA1Q9Y5I3 THOC6-202ENST00000326266 1419 ntAPPRIS P1 TSL 1 (best) BASIC25.71■■□□□ 1.71
PCDHA1Q9Y5I3 C1QTNF4-201ENST00000302514 1664 ntAPPRIS P1 TSL 1 (best) BASIC25.71■■□□□ 1.71
PCDHA1Q9Y5I3 DXO-201ENST00000337523 1628 ntAPPRIS P1 TSL 1 (best) BASIC25.7■■□□□ 1.71
PCDHA1Q9Y5I3 NIPSNAP2-205ENST00000446778 1882 ntTSL 2 BASIC25.7■■□□□ 1.71
PCDHA1Q9Y5I3 SNX18-201ENST00000326277 2063 ntTSL 2 BASIC25.7■■□□□ 1.71
PCDHA1Q9Y5I3 AL591684.2-201ENST00000605970 1594 ntTSL 5 BASIC25.7■■□□□ 1.71
PCDHA1Q9Y5I3 ACP4-201ENST00000270593 1347 ntAPPRIS P1 TSL 1 (best) BASIC25.7■■□□□ 1.71
PCDHA1Q9Y5I3 CCDC107-205ENST00000421582 1324 ntAPPRIS ALT2 TSL 2 BASIC25.7■■□□□ 1.71
PCDHA1Q9Y5I3 FAM66C-205ENST00000456135 1216 ntTSL 5 BASIC25.7■■□□□ 1.7
PCDHA1Q9Y5I3 SCO2-204ENST00000543927 1051 ntAPPRIS P1 TSL 2 BASIC25.7■■□□□ 1.7
PCDHA1Q9Y5I3 C15orf61-202ENST00000557807 769 ntTSL 2 BASIC25.7■■□□□ 1.7
PCDHA1Q9Y5I3 SNAI3-AS1-201ENST00000563261 998 ntTSL 1 (best) BASIC25.7■■□□□ 1.7
PCDHA1Q9Y5I3 AL499627.2-201ENST00000606283 725 ntBASIC25.7■■□□□ 1.7
PCDHA1Q9Y5I3 ZFP91-CNTF-201ENST00000389919 2319 ntAPPRIS P5 TSL 2 BASIC25.7■■□□□ 1.7
PCDHA1Q9Y5I3 RNASEH2B-201ENST00000336617 1629 ntAPPRIS P1 TSL 1 (best) BASIC25.7■■□□□ 1.7
PCDHA1Q9Y5I3 SLC35A2-210ENST00000616181 1614 ntTSL 2 BASIC25.7■■□□□ 1.7
PCDHA1Q9Y5I3 ADARB2-202ENST00000381310 1810 ntTSL 1 (best) BASIC25.7■■□□□ 1.7
PCDHA1Q9Y5I3 FAM53B-201ENST00000280780 1568 ntTSL 1 (best) BASIC25.69■■□□□ 1.7
PCDHA1Q9Y5I3 C5orf49-201ENST00000399810 2385 ntAPPRIS P2 TSL 1 (best) BASIC25.69■■□□□ 1.7
PCDHA1Q9Y5I3 AKT1S1-204ENST00000391832 1911 ntAPPRIS P1 TSL 1 (best) BASIC25.69■■□□□ 1.7
PCDHA1Q9Y5I3 ZC3H14-219ENST00000556945 2075 ntTSL 5 BASIC25.69■■□□□ 1.7
PCDHA1Q9Y5I3 CDKN2D-201ENST00000335766 1086 ntAPPRIS P1 TSL 1 (best) BASIC25.69■■□□□ 1.7
PCDHA1Q9Y5I3 CLYBL-202ENST00000376354 1127 ntTSL 5 BASIC25.69■■□□□ 1.7
PCDHA1Q9Y5I3 AC068580.1-201ENST00000446489 252 ntTSL 3 BASIC25.69■■□□□ 1.7
PCDHA1Q9Y5I3 FBXO33-202ENST00000554190 534 ntTSL 3 BASIC25.69■■□□□ 1.7
PCDHA1Q9Y5I3 ZFPM1-201ENST00000319555 5380 ntAPPRIS P1 TSL 1 (best) BASIC25.69■■□□□ 1.7
PCDHA1Q9Y5I3 LYRM1-201ENST00000219168 1626 ntAPPRIS P1 TSL 2 BASIC25.69■■□□□ 1.7
PCDHA1Q9Y5I3 SH3RF3-AS1-201ENST00000567491 1604 ntBASIC25.69■■□□□ 1.7
PCDHA1Q9Y5I3 CNTFR-201ENST00000351266 1910 ntAPPRIS P1 TSL 1 (best) BASIC25.69■■□□□ 1.7
PCDHA1Q9Y5I3 HAUS7-202ENST00000370211 1363 ntAPPRIS P2 TSL 1 (best) BASIC25.69■■□□□ 1.7
PCDHA1Q9Y5I3 PDIA2-201ENST00000219406 1698 ntAPPRIS P2 TSL 1 (best) BASIC25.68■■□□□ 1.7
PCDHA1Q9Y5I3 GALNT12-201ENST00000375011 2735 ntAPPRIS P1 TSL 1 (best) BASIC25.68■■□□□ 1.7
PCDHA1Q9Y5I3 ABHD16B-201ENST00000369916 1491 ntAPPRIS P1 BASIC25.68■■□□□ 1.7
Retrieved 100 of 98,524 protein–RNA pairs in 21.9 ms