Protein–RNA interactions for Protein: A6NM62

LRRC53, Leucine-rich repeat-containing protein 53, humanhuman

Predictions only

Length 1,247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC53A6NM62 CREB3L3-205ENST00000602257 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC24.18■■□□□ 1.46
LRRC53A6NM62 MYBL2-201ENST00000217026 2639 ntAPPRIS P1 TSL 1 (best) BASIC24.17■■□□□ 1.46
LRRC53A6NM62 FRAT1-201ENST00000371021 2649 ntAPPRIS P1 BASIC24.17■■□□□ 1.46
LRRC53A6NM62 SH3GLB2-203ENST00000372564 2982 ntAPPRIS P1 TSL 1 (best) BASIC24.17■■□□□ 1.46
LRRC53A6NM62 TPM4-201ENST00000300933 2666 ntTSL 1 (best) BASIC24.17■■□□□ 1.46
LRRC53A6NM62 BRI3-201ENST00000297290 780 ntAPPRIS P1 TSL 1 (best) BASIC24.17■■□□□ 1.46
LRRC53A6NM62 MCRIP1-202ENST00000457257 942 ntTSL 3 BASIC24.17■■□□□ 1.46
LRRC53A6NM62 BX088645.1-201ENST00000636699 1728 ntAPPRIS P1 TSL 5 BASIC24.17■■□□□ 1.46
LRRC53A6NM62 MTCH2-201ENST00000302503 2587 ntAPPRIS P1 TSL 1 (best) BASIC24.17■■□□□ 1.46
LRRC53A6NM62 ZNF428-201ENST00000300811 1412 ntAPPRIS P1 TSL 1 (best) BASIC24.17■■□□□ 1.46
LRRC53A6NM62 KCNQ5-213ENST00000629977 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC24.16■■□□□ 1.46
LRRC53A6NM62 SYT6-209ENST00000610222 1707 ntAPPRIS P1 TSL 5 BASIC24.16■■□□□ 1.46
LRRC53A6NM62 MSL1-203ENST00000577454 2081 ntTSL 2 BASIC24.16■■□□□ 1.46
LRRC53A6NM62 LINC00526-201ENST00000581067 1875 ntBASIC24.16■■□□□ 1.46
LRRC53A6NM62 VGLL2-201ENST00000326274 2212 ntAPPRIS P1 TSL 1 (best) BASIC24.16■■□□□ 1.46
LRRC53A6NM62 KCNIP1-201ENST00000328939 2014 ntAPPRIS P1 TSL 1 (best) BASIC24.16■■□□□ 1.46
LRRC53A6NM62 LSR-203ENST00000360798 1963 ntTSL 2 BASIC24.16■■□□□ 1.46
LRRC53A6NM62 COG8-201ENST00000562081 1731 ntAPPRIS P1 TSL 5 BASIC24.15■■□□□ 1.46
LRRC53A6NM62 NKX6-2-201ENST00000368592 2673 ntAPPRIS P1 TSL 1 (best) BASIC24.15■■□□□ 1.46
LRRC53A6NM62 LINC00565-201ENST00000562710 2331 ntBASIC24.15■■□□□ 1.46
LRRC53A6NM62 CACNG6-203ENST00000352529 1635 ntTSL 5 BASIC24.15■■□□□ 1.46
LRRC53A6NM62 PCSK6-215ENST00000611967 3336 ntTSL 1 (best) BASIC24.15■■□□□ 1.46
LRRC53A6NM62 MZT2B-201ENST00000281871 933 ntAPPRIS P3 TSL 1 (best) BASIC24.15■■□□□ 1.46
LRRC53A6NM62 MZT2A-201ENST00000309451 624 ntAPPRIS P1 TSL 1 (best) BASIC24.15■■□□□ 1.46
LRRC53A6NM62 C1QTNF12-201ENST00000330388 1036 ntAPPRIS P1 TSL 1 (best) BASIC24.15■■□□□ 1.46
LRRC53A6NM62 KRTAP5-5-201ENST00000399676 933 ntAPPRIS P1 BASIC24.15■■□□□ 1.46
LRRC53A6NM62 SIGLEC15-201ENST00000389474 1573 ntAPPRIS P1 TSL 1 (best) BASIC24.15■■□□□ 1.46
LRRC53A6NM62 PNMA6A-201ENST00000421798 2209 ntAPPRIS P1 TSL 2 BASIC24.15■■□□□ 1.46
LRRC53A6NM62 NRSN1-204ENST00000378491 2354 ntAPPRIS P1 TSL 1 (best) BASIC24.15■■□□□ 1.46
LRRC53A6NM62 NIPSNAP2-205ENST00000446778 1882 ntTSL 2 BASIC24.15■■□□□ 1.46
LRRC53A6NM62 NEUROG3-201ENST00000242462 1376 ntAPPRIS P1 TSL 1 (best) BASIC24.15■■□□□ 1.46
LRRC53A6NM62 CPE-201ENST00000402744 2421 ntAPPRIS P1 TSL 1 (best) BASIC24.14■■□□□ 1.46
LRRC53A6NM62 ECEL1P1-201ENST00000373592 1742 ntBASIC24.14■■□□□ 1.45
LRRC53A6NM62 YBX1P4-201ENST00000392794 808 ntBASIC24.14■■□□□ 1.45
LRRC53A6NM62 SENP5-202ENST00000419026 973 ntTSL 3 BASIC24.14■■□□□ 1.45
LRRC53A6NM62 AC053527.1-201ENST00000502790 685 ntTSL 3 BASIC24.14■■□□□ 1.45
LRRC53A6NM62 UBE3C-209ENST00000611269 1866 ntTSL 2 BASIC24.14■■□□□ 1.45
LRRC53A6NM62 HNRNPUL1-221ENST00000617305 1018 ntTSL 1 (best) BASIC24.14■■□□□ 1.45
LRRC53A6NM62 AC119427.1-201ENST00000633182 556 ntTSL 4 BASIC24.14■■□□□ 1.45
LRRC53A6NM62 ELL3-201ENST00000319359 2352 ntAPPRIS P1 TSL 1 (best) BASIC24.14■■□□□ 1.45
LRRC53A6NM62 GPSM1-204ENST00000429455 2057 ntTSL 3 BASIC24.14■■□□□ 1.45
LRRC53A6NM62 SPOCK3-222ENST00000512681 1457 ntTSL 2 BASIC24.13■■□□□ 1.45
LRRC53A6NM62 CELF5-201ENST00000292672 1854 ntAPPRIS P1 TSL 1 (best) BASIC24.13■■□□□ 1.45
LRRC53A6NM62 SHMT1-202ENST00000352886 2437 ntTSL 2 BASIC24.13■■□□□ 1.45
LRRC53A6NM62 DPH1-203ENST00000570477 1747 ntAPPRIS ALT2 TSL 2 BASIC24.13■■□□□ 1.45
LRRC53A6NM62 ZC3H14-223ENST00000557607 1983 ntTSL 5 BASIC24.13■■□□□ 1.45
LRRC53A6NM62 TMEM179-204ENST00000556573 1430 ntAPPRIS P1 TSL 3 BASIC24.13■■□□□ 1.45
LRRC53A6NM62 CCDC106-205ENST00000588740 1404 ntAPPRIS P1 TSL 1 (best) BASIC24.13■■□□□ 1.45
LRRC53A6NM62 TK2-202ENST00000417693 1046 ntTSL 2 BASIC24.13■■□□□ 1.45
LRRC53A6NM62 AL590094.1-201ENST00000635581 706 ntTSL 2 BASIC24.13■■□□□ 1.45
LRRC53A6NM62 NBL1-202ENST00000375136 2172 ntAPPRIS P3 TSL 1 (best) BASIC24.13■■□□□ 1.45
LRRC53A6NM62 REST-206ENST00000612429 1376 ntTSL 5 BASIC24.13■■□□□ 1.45
LRRC53A6NM62 REST-207ENST00000616975 1370 ntTSL 5 BASIC24.13■■□□□ 1.45
LRRC53A6NM62 REST-212ENST00000640343 1352 ntTSL 1 (best) BASIC24.13■■□□□ 1.45
LRRC53A6NM62 C19orf68-201ENST00000328759 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC24.13■■□□□ 1.45
LRRC53A6NM62 HAR1A-201ENST00000433161 1882 ntTSL 1 (best) BASIC24.13■■□□□ 1.45
LRRC53A6NM62 CDC20-202ENST00000372462 1777 ntAPPRIS P1 TSL 1 (best) BASIC24.12■■□□□ 1.45
LRRC53A6NM62 APOE-201ENST00000252486 1208 ntAPPRIS P1 TSL 1 (best) BASIC24.12■■□□□ 1.45
LRRC53A6NM62 STMN4-201ENST00000265770 1250 ntAPPRIS P1 TSL 1 (best) BASIC24.12■■□□□ 1.45
LRRC53A6NM62 CCDC7-201ENST00000277657 1899 ntAPPRIS P2 TSL 1 (best) BASIC24.12■■□□□ 1.45
LRRC53A6NM62 C1QTNF1-207ENST00000580454 1396 ntAPPRIS P1 TSL 5 BASIC24.12■■□□□ 1.45
LRRC53A6NM62 PRELID2-201ENST00000334744 2140 ntTSL 2 BASIC24.11■■□□□ 1.45
LRRC53A6NM62 ST3GAL4-202ENST00000356132 1745 ntTSL 5 BASIC24.11■■□□□ 1.45
LRRC53A6NM62 AC073188.6-202ENST00000616616 2281 ntTSL 1 (best) BASIC24.11■■□□□ 1.45
LRRC53A6NM62 VSTM2L-201ENST00000373459 831 ntTSL 3 BASIC24.11■■□□□ 1.45
LRRC53A6NM62 TK2-216ENST00000564917 1156 ntTSL 3 BASIC24.11■■□□□ 1.45
LRRC53A6NM62 AC137630.3-201ENST00000607245 391 ntBASIC24.11■■□□□ 1.45
LRRC53A6NM62 SEPT8-207ENST00000378719 2889 ntTSL 1 (best) BASIC24.11■■□□□ 1.45
LRRC53A6NM62 SIGMAR1-201ENST00000277010 1656 ntAPPRIS P1 TSL 1 (best) BASIC24.11■■□□□ 1.45
LRRC53A6NM62 SH3YL1-201ENST00000356150 1763 ntAPPRIS P1 TSL 1 (best) BASIC24.11■■□□□ 1.45
LRRC53A6NM62 EPS8L1-202ENST00000245618 2198 ntTSL 1 (best) BASIC24.1■■□□□ 1.45
LRRC53A6NM62 DNAJC25-GNG10-201ENST00000374294 1448 ntAPPRIS P1 TSL 2 BASIC24.1■■□□□ 1.45
LRRC53A6NM62 RFLNA-202ENST00000338359 652 ntAPPRIS P2 TSL 1 (best) BASIC24.1■■□□□ 1.45
LRRC53A6NM62 ENHO-201ENST00000399775 1082 ntAPPRIS P1 TSL 2 BASIC24.1■■□□□ 1.45
LRRC53A6NM62 EPM2A-202ENST00000435470 1278 ntTSL 1 (best) BASIC24.1■■□□□ 1.45
LRRC53A6NM62 SNAI3-AS1-203ENST00000565633 829 ntTSL 5 BASIC24.1■■□□□ 1.45
LRRC53A6NM62 MYL12B-203ENST00000581193 1249 ntAPPRIS P1 TSL 3 BASIC24.1■■□□□ 1.45
LRRC53A6NM62 ZNF395-210ENST00000523095 1790 ntAPPRIS P1 TSL 1 (best) BASIC24.1■■□□□ 1.45
LRRC53A6NM62 CLDN5-201ENST00000403084 2357 ntBASIC24.1■■□□□ 1.45
LRRC53A6NM62 CRIM1-201ENST00000280527 5912 ntAPPRIS P1 TSL 1 (best) BASIC24.1■■□□□ 1.45
LRRC53A6NM62 NEIL1-206ENST00000564784 2019 ntAPPRIS P1 TSL 2 BASIC24.1■■□□□ 1.45
LRRC53A6NM62 CDIPT-201ENST00000219789 2353 ntAPPRIS P1 TSL 1 (best) BASIC24.09■■□□□ 1.45
LRRC53A6NM62 SUMF1-201ENST00000272902 2159 ntAPPRIS P1 TSL 1 (best) BASIC24.09■■□□□ 1.45
LRRC53A6NM62 POLR2J2-202ENST00000358438 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC24.09■■□□□ 1.45
LRRC53A6NM62 RASSF5-202ENST00000579436 2064 ntAPPRIS P1 TSL 1 (best) BASIC24.09■■□□□ 1.45
LRRC53A6NM62 VSX1-205ENST00000429762 1977 ntTSL 1 (best) BASIC24.09■■□□□ 1.45
LRRC53A6NM62 MFSD7-202ENST00000347950 1599 ntTSL 2 BASIC24.09■■□□□ 1.45
LRRC53A6NM62 ST3GAL6-AS1-203ENST00000488132 769 ntTSL 3 BASIC24.09■■□□□ 1.45
LRRC53A6NM62 EIF3J-203ENST00000535391 925 ntTSL 2 BASIC24.09■■□□□ 1.45
LRRC53A6NM62 LIMS2-202ENST00000355119 2045 ntAPPRIS ALT1 TSL 1 (best) BASIC24.09■■□□□ 1.45
LRRC53A6NM62 ZDHHC16-203ENST00000353979 1647 ntTSL 1 (best) BASIC24.09■■□□□ 1.45
LRRC53A6NM62 PPP2R2D-201ENST00000455566 5738 ntAPPRIS P1 TSL 1 (best) BASIC24.09■■□□□ 1.45
LRRC53A6NM62 P4HA2-202ENST00000360568 2313 ntAPPRIS ALT1 TSL 1 (best) BASIC24.09■■□□□ 1.45
LRRC53A6NM62 PAXBP1-201ENST00000290178 2564 ntTSL 1 (best) BASIC24.08■■□□□ 1.45
LRRC53A6NM62 TULP1-202ENST00000322263 1941 ntTSL 1 (best) BASIC24.08■■□□□ 1.45
LRRC53A6NM62 SLC35F4-206ENST00000556826 1908 ntAPPRIS P1 TSL 5 BASIC24.08■■□□□ 1.45
LRRC53A6NM62 NIPA2-203ENST00000398013 2280 ntAPPRIS P1 TSL 1 (best) BASIC24.08■■□□□ 1.45
LRRC53A6NM62 CTDSP2-203ENST00000547701 988 ntTSL 1 (best) BASIC24.08■■□□□ 1.45
LRRC53A6NM62 UBFD1-208ENST00000567264 642 ntAPPRIS ALT2 TSL 5 BASIC24.08■■□□□ 1.45
LRRC53A6NM62 SLC25A11-201ENST00000225665 1897 ntAPPRIS P1 TSL 1 (best) BASIC24.08■■□□□ 1.45
Retrieved 100 of 98,524 protein–RNA pairs in 50.8 ms