Protein–RNA interactions for Protein: Q08174

PCDH1, Protocadherin-1, humanhuman

Predictions only

Length 1,060 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1Q08174 UBL7-202ENST00000395081 1427 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
PCDH1Q08174 CCDC157-202ENST00000399824 1759 ntAPPRIS ALT2 TSL 1 (best) BASIC21.71■■□□□ 1.07
PCDH1Q08174 EGR3-203ENST00000519492 1500 ntTSL 5 BASIC21.71■■□□□ 1.07
PCDH1Q08174 CENPX-202ENST00000392359 805 ntAPPRIS P1 TSL 2 BASIC21.71■■□□□ 1.07
PCDH1Q08174 AC138207.2-201ENST00000583377 492 ntTSL 2 BASIC21.71■■□□□ 1.07
PCDH1Q08174 MMP21-201ENST00000368808 1919 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.07
PCDH1Q08174 PCK2-201ENST00000216780 2357 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.07
PCDH1Q08174 ADAM22-209ENST00000439864 2576 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
PCDH1Q08174 LRRC73-201ENST00000372441 2121 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
PCDH1Q08174 PDIA2-201ENST00000219406 1698 ntAPPRIS P2 TSL 1 (best) BASIC21.7■■□□□ 1.06
PCDH1Q08174 SRPK3-203ENST00000370104 1753 ntAPPRIS ALT2 TSL 1 (best) BASIC21.7■■□□□ 1.06
PCDH1Q08174 SYCE1-204ENST00000432597 1254 ntAPPRIS ALT2 TSL 1 (best) BASIC21.7■■□□□ 1.06
PCDH1Q08174 AC239859.2-201ENST00000444165 318 ntBASIC21.7■■□□□ 1.06
PCDH1Q08174 NAA30-203ENST00000555166 1294 ntAPPRIS ALT2 TSL 2 BASIC21.7■■□□□ 1.06
PCDH1Q08174 MVD-201ENST00000301012 1823 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
PCDH1Q08174 GAS2L1-201ENST00000406549 1803 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
PCDH1Q08174 AC079630.1-202ENST00000618127 1840 ntBASIC21.7■■□□□ 1.06
PCDH1Q08174 TMUB1-201ENST00000297533 1353 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
PCDH1Q08174 LINC01116-201ENST00000295549 1407 ntTSL 2 BASIC21.7■■□□□ 1.06
PCDH1Q08174 LRRC61-205ENST00000493307 1456 ntAPPRIS P1 TSL 5 BASIC21.7■■□□□ 1.06
PCDH1Q08174 P2RX4-211ENST00000543171 1777 ntTSL 5 BASIC21.69■■□□□ 1.06
PCDH1Q08174 HAR1A-201ENST00000433161 1882 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
PCDH1Q08174 MRGPRF-AS1-203ENST00000569432 542 ntTSL 4 BASIC21.69■■□□□ 1.06
PCDH1Q08174 PKIG-206ENST00000372892 1338 ntAPPRIS P1 TSL 2 BASIC21.69■■□□□ 1.06
PCDH1Q08174 OSCAR-203ENST00000356532 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC21.69■■□□□ 1.06
PCDH1Q08174 OSCAR-204ENST00000358375 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC21.69■■□□□ 1.06
PCDH1Q08174 OSCAR-210ENST00000616447 1358 ntAPPRIS ALT2 TSL 5 BASIC21.69■■□□□ 1.06
PCDH1Q08174 RPP38-207ENST00000616640 1537 ntAPPRIS P1 TSL 2 BASIC21.69■■□□□ 1.06
PCDH1Q08174 WRNIP1-205ENST00000618555 2651 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
PCDH1Q08174 FNDC4-201ENST00000264703 1657 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
PCDH1Q08174 IMPDH1-210ENST00000480861 1765 ntAPPRIS P2 TSL 2 BASIC21.69■■□□□ 1.06
PCDH1Q08174 SPNS1-207ENST00000565975 1979 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
PCDH1Q08174 PNKP-201ENST00000322344 2041 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
PCDH1Q08174 GPIHBP1-201ENST00000622500 2282 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
PCDH1Q08174 CADPS-219ENST00000612439 5455 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
PCDH1Q08174 THRA-209ENST00000584985 2421 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
PCDH1Q08174 THRA-201ENST00000264637 2538 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
PCDH1Q08174 HSPE1-201ENST00000233893 950 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
PCDH1Q08174 MAGI2-AS3-201ENST00000414797 1072 ntTSL 2 BASIC21.68■■□□□ 1.06
PCDH1Q08174 CLDN15-201ENST00000308344 1370 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
PCDH1Q08174 IGF2-AS-201ENST00000381361 2063 ntTSL 2 BASIC21.68■■□□□ 1.06
PCDH1Q08174 BX088645.1-201ENST00000636699 1728 ntAPPRIS P1 TSL 5 BASIC21.67■■□□□ 1.06
PCDH1Q08174 FAIM-201ENST00000338446 1622 ntTSL 5 BASIC21.67■■□□□ 1.06
PCDH1Q08174 SNUPN-207ENST00000567134 1641 ntAPPRIS P1 TSL 5 BASIC21.67■■□□□ 1.06
PCDH1Q08174 SESN3-202ENST00000416495 1408 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
PCDH1Q08174 PLPP2-202ENST00000327790 1397 ntTSL 5 BASIC21.67■■□□□ 1.06
PCDH1Q08174 ATP11B-209ENST00000493826 963 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
PCDH1Q08174 EXOG-217ENST00000630638 197 ntTSL 5 BASIC21.67■■□□□ 1.06
PCDH1Q08174 CCDC154-201ENST00000389176 2212 ntAPPRIS P5 TSL 5 BASIC21.67■■□□□ 1.06
PCDH1Q08174 FMR1-AS1-201ENST00000594922 2005 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
PCDH1Q08174 C3orf58-207ENST00000495414 1876 ntTSL 2 BASIC21.66■■□□□ 1.06
PCDH1Q08174 CDC20-202ENST00000372462 1777 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
PCDH1Q08174 MSANTD3-207ENST00000622639 1748 ntAPPRIS P1 TSL 3 BASIC21.66■■□□□ 1.06
PCDH1Q08174 AL591684.2-201ENST00000605970 1594 ntTSL 5 BASIC21.66■■□□□ 1.06
PCDH1Q08174 HYAL2-207ENST00000442581 2318 ntAPPRIS P1 TSL 2 BASIC21.66■■□□□ 1.06
PCDH1Q08174 FEZ1-202ENST00000366139 1053 ntTSL 2 BASIC21.66■■□□□ 1.06
PCDH1Q08174 SLC35C1-202ENST00000442528 1756 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
PCDH1Q08174 ODF3L2-201ENST00000315489 1604 ntAPPRIS P2 TSL 1 (best) BASIC21.66■■□□□ 1.06
PCDH1Q08174 PFKFB3-201ENST00000317350 1999 ntAPPRIS ALT1 TSL 5 BASIC21.65■■□□□ 1.06
PCDH1Q08174 XBP1-201ENST00000216037 1850 ntAPPRIS P2 TSL 1 (best) BASIC21.65■■□□□ 1.06
PCDH1Q08174 MDK-202ENST00000395565 951 ntAPPRIS P2 TSL 2 BASIC21.65■■□□□ 1.06
PCDH1Q08174 PDLIM2-202ENST00000308354 2236 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
PCDH1Q08174 PDLIM2-203ENST00000339162 2226 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
PCDH1Q08174 C1orf122-202ENST00000373043 2229 ntAPPRIS ALT2 TSL 1 (best) BASIC21.65■■□□□ 1.06
PCDH1Q08174 DPF1-206ENST00000420980 2227 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
PCDH1Q08174 PLPP1-202ENST00000307259 1597 ntAPPRIS ALT1 TSL 1 (best) BASIC21.65■■□□□ 1.06
PCDH1Q08174 ABHD6-205ENST00000478253 2482 ntAPPRIS P1 TSL 2 BASIC21.65■■□□□ 1.06
PCDH1Q08174 AC133561.1-201ENST00000568600 2415 ntBASIC21.65■■□□□ 1.06
PCDH1Q08174 RMI2-201ENST00000312499 1457 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
PCDH1Q08174 SRXN1-201ENST00000381962 2698 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
PCDH1Q08174 SIX3-201ENST00000260653 2523 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
PCDH1Q08174 ASF1B-201ENST00000263382 2059 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
PCDH1Q08174 CCSER2-202ENST00000359979 2066 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
PCDH1Q08174 MYH7B-209ENST00000618182 6197 ntAPPRIS ALT2 TSL 5 BASIC21.64■■□□□ 1.05
PCDH1Q08174 AC144652.1-201ENST00000609974 1624 ntBASIC21.64■■□□□ 1.05
PCDH1Q08174 ARRDC1-AS1-203ENST00000623970 2210 ntTSL 5 BASIC21.64■■□□□ 1.05
PCDH1Q08174 ME2-208ENST00000638937 2471 ntTSL 5 BASIC21.64■■□□□ 1.05
PCDH1Q08174 FP325331.1-202ENST00000623531 1380 ntBASIC21.63■■□□□ 1.05
PCDH1Q08174 GCA-201ENST00000233612 1694 ntTSL 2 BASIC21.63■■□□□ 1.05
PCDH1Q08174 SMAD1-201ENST00000302085 1966 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
PCDH1Q08174 ADGRB1-202ENST00000517894 6241 ntAPPRIS P1 TSL 5 BASIC21.63■■□□□ 1.05
PCDH1Q08174 PNMT-201ENST00000269582 1253 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
PCDH1Q08174 FOXP1-201ENST00000318779 843 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
PCDH1Q08174 MRPS34-202ENST00000397375 1024 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
PCDH1Q08174 CUL4A-209ENST00000488558 1111 ntTSL 3 BASIC21.63■■□□□ 1.05
PCDH1Q08174 MTDHP2-201ENST00000601468 714 ntBASIC21.63■■□□□ 1.05
PCDH1Q08174 AC010997.5-201ENST00000609182 354 ntBASIC21.63■■□□□ 1.05
PCDH1Q08174 AC112229.4-201ENST00000488671 1528 ntTSL 2 BASIC21.63■■□□□ 1.05
PCDH1Q08174 TBX1-202ENST00000332710 2084 ntAPPRIS P4 TSL 1 (best) BASIC21.63■■□□□ 1.05
PCDH1Q08174 RCN2-201ENST00000320963 1750 ntTSL 5 BASIC21.63■■□□□ 1.05
PCDH1Q08174 TMEM64-203ENST00000458549 4997 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
PCDH1Q08174 MYBL1-201ENST00000517885 1714 ntTSL 5 BASIC21.63■■□□□ 1.05
PCDH1Q08174 RAD9A-201ENST00000307980 2119 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
PCDH1Q08174 NAE1-202ENST00000359087 1825 ntTSL 2 BASIC21.62■■□□□ 1.05
PCDH1Q08174 LINGO3-201ENST00000585527 2241 ntAPPRIS P1 BASIC21.62■■□□□ 1.05
PCDH1Q08174 AGAP3-201ENST00000335367 2675 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
PCDH1Q08174 STOML1-201ENST00000316900 2169 ntTSL 2 BASIC21.62■■□□□ 1.05
PCDH1Q08174 NPTXR-201ENST00000333039 5784 ntAPPRIS ALT2 TSL 1 (best) BASIC21.62■■□□□ 1.05
PCDH1Q08174 GDI1-204ENST00000447750 2474 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
PCDH1Q08174 POU2F2-215ENST00000560398 1788 ntTSL 5 BASIC21.61■■□□□ 1.05
Retrieved 100 of 98,524 protein–RNA pairs in 72.1 ms