Protein–RNA interactions for Protein: P78363

ABCA4, Retinal-specific ATP-binding cassette transporter, humanhuman

Predictions only

Length 2,273 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA4P78363 TSKS-202ENST00000358830 1367 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
ABCA4P78363 GPS1-204ENST00000392358 2276 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
ABCA4P78363 AC064853.3-201ENST00000641801 1658 ntAPPRIS P1 BASIC19.42■□□□□ 0.7
ABCA4P78363 OTUD5-201ENST00000156084 2740 ntAPPRIS P3 TSL 1 (best) BASIC19.42■□□□□ 0.7
ABCA4P78363 HNRNPAB-201ENST00000355836 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
ABCA4P78363 MRPS7-203ENST00000579002 1638 ntTSL 2 BASIC19.42■□□□□ 0.7
ABCA4P78363 NIPA2-202ENST00000359727 1531 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
ABCA4P78363 NRL-202ENST00000396997 1517 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
ABCA4P78363 HABP4-202ENST00000375251 2304 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
ABCA4P78363 SNTB1-202ENST00000517992 2273 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
ABCA4P78363 JARID2-AS1-201ENST00000441978 455 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
ABCA4P78363 BCAP29-209ENST00000465919 942 ntTSL 2 BASIC19.42■□□□□ 0.7
ABCA4P78363 C8orf58-206ENST00000614574 1955 ntAPPRIS ALT2 TSL 5 BASIC19.42■□□□□ 0.7
ABCA4P78363 ZNF174-202ENST00000344823 1557 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
ABCA4P78363 SIMC1-204ENST00000430704 1925 ntAPPRIS P3 TSL 2 BASIC19.42■□□□□ 0.7
ABCA4P78363 ALG2-203ENST00000476832 1880 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
ABCA4P78363 METTL21A-210ENST00000458426 1366 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
ABCA4P78363 HAGHL-212ENST00000564537 1667 ntTSL 2 BASIC19.41■□□□□ 0.7
ABCA4P78363 ZNHIT2-201ENST00000310597 1306 ntAPPRIS P1 BASIC19.41■□□□□ 0.7
ABCA4P78363 EXOG-203ENST00000422077 1317 ntTSL 2 BASIC19.41■□□□□ 0.7
ABCA4P78363 CIC-201ENST00000160740 6111 ntAPPRIS ALT1 TSL 5 BASIC19.41■□□□□ 0.7
ABCA4P78363 GP9-201ENST00000307395 889 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
ABCA4P78363 AC010203.1-202ENST00000550096 695 ntTSL 3 BASIC19.41■□□□□ 0.7
ABCA4P78363 AC126544.1-201ENST00000580842 1059 ntBASIC19.41■□□□□ 0.7
ABCA4P78363 RAB43-208ENST00000615093 783 ntTSL 5 BASIC19.41■□□□□ 0.7
ABCA4P78363 SCTR-201ENST00000019103 1865 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
ABCA4P78363 IKBIP-202ENST00000342502 1645 ntAPPRIS ALT1 TSL 1 (best) BASIC19.41■□□□□ 0.7
ABCA4P78363 AC096887.1-203ENST00000607203 768 ntAPPRIS ALT2 TSL 5 BASIC19.41■□□□□ 0.7
ABCA4P78363 SPPL2B-211ENST00000614794 1559 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
ABCA4P78363 ARSB-206ENST00000565165 1772 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
ABCA4P78363 SPOCK2-203ENST00000412663 1284 ntTSL 5 BASIC19.4■□□□□ 0.7
ABCA4P78363 AC027612.3-201ENST00000413684 1047 ntBASIC19.4■□□□□ 0.7
ABCA4P78363 GRPEL2-202ENST00000416916 1006 ntTSL 2 BASIC19.4■□□□□ 0.7
ABCA4P78363 AICDA-202ENST00000537228 667 ntTSL 5 BASIC19.4■□□□□ 0.7
ABCA4P78363 NEDD4L-225ENST00000589054 1033 ntTSL 3 BASIC19.4■□□□□ 0.7
ABCA4P78363 ST3GAL4-213ENST00000530591 1459 ntAPPRIS P3 TSL 1 (best) BASIC19.4■□□□□ 0.7
ABCA4P78363 FAHD1-203ENST00000427358 1974 ntAPPRIS P1 BASIC19.4■□□□□ 0.7
ABCA4P78363 AL353743.1-201ENST00000637846 1769 ntTSL 5 BASIC19.4■□□□□ 0.7
ABCA4P78363 ZFYVE19-201ENST00000299173 1555 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
ABCA4P78363 LINC02043-201ENST00000419745 1832 ntTSL 2 BASIC19.4■□□□□ 0.7
ABCA4P78363 TSEN15-207ENST00000533373 618 ntTSL 2 BASIC19.4■□□□□ 0.7
ABCA4P78363 MIF4GD-211ENST00000580571 952 ntTSL 2 BASIC19.4■□□□□ 0.7
ABCA4P78363 NFKBIB-204ENST00000572515 1929 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
ABCA4P78363 ST6GALNAC6-204ENST00000373144 2406 ntAPPRIS ALT1 TSL 1 (best) BASIC19.39■□□□□ 0.7
ABCA4P78363 UBTD1-201ENST00000370664 1706 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
ABCA4P78363 LHPP-201ENST00000368839 1522 ntTSL 1 (best) BASIC19.39■□□□□ 0.7
ABCA4P78363 UBE2C-202ENST00000335046 737 ntTSL 2 BASIC19.39■□□□□ 0.69
ABCA4P78363 AC009086.3-201ENST00000623486 1008 ntBASIC19.39■□□□□ 0.69
ABCA4P78363 HAS2-AS1-201ENST00000514180 1656 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
ABCA4P78363 HLA-L-211ENST00000482052 1765 ntBASIC19.39■□□□□ 0.69
ABCA4P78363 NIPA2-205ENST00000539711 1412 ntTSL 2 BASIC19.39■□□□□ 0.69
ABCA4P78363 YJEFN3-203ENST00000514277 995 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
ABCA4P78363 AC012414.1-201ENST00000556676 535 ntBASIC19.39■□□□□ 0.69
ABCA4P78363 CAPZB-203ENST00000375142 1686 ntAPPRIS ALT1 TSL 5 BASIC19.38■□□□□ 0.69
ABCA4P78363 CCKBR-206ENST00000532715 1734 ntTSL 3 BASIC19.38■□□□□ 0.69
ABCA4P78363 TSPY26P-201ENST00000476365 1326 ntBASIC19.38■□□□□ 0.69
ABCA4P78363 CBWD2-201ENST00000259199 1812 ntAPPRIS P3 TSL 1 (best) BASIC19.38■□□□□ 0.69
ABCA4P78363 ZFYVE28-207ENST00000509171 1135 ntTSL 2 BASIC19.38■□□□□ 0.69
ABCA4P78363 pRNA.6-201ENST00000610482 90 ntBASIC19.38■□□□□ 0.69
ABCA4P78363 pRNA.5-201ENST00000612139 90 ntBASIC19.38■□□□□ 0.69
ABCA4P78363 pRNA.11-201ENST00000618423 90 ntBASIC19.38■□□□□ 0.69
ABCA4P78363 pRNA.13-201ENST00000619112 90 ntBASIC19.38■□□□□ 0.69
ABCA4P78363 EBF4-210ENST00000609451 2012 ntAPPRIS ALT1 TSL 5 BASIC19.38■□□□□ 0.69
ABCA4P78363 CDIPT-210ENST00000570016 1346 ntAPPRIS P1 TSL 5 BASIC19.38■□□□□ 0.69
ABCA4P78363 CFAP99-207ENST00000635017 2298 ntTSL 5 BASIC19.38■□□□□ 0.69
ABCA4P78363 ZNF837-201ENST00000427624 2038 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
ABCA4P78363 AC091060.1-201ENST00000623524 1766 ntBASIC19.38■□□□□ 0.69
ABCA4P78363 SOHLH1-201ENST00000298466 1987 ntAPPRIS P3 TSL 1 (best) BASIC19.37■□□□□ 0.69
ABCA4P78363 ODF3L2-201ENST00000315489 1604 ntAPPRIS P2 TSL 1 (best) BASIC19.37■□□□□ 0.69
ABCA4P78363 AL117348.2-201ENST00000432920 1625 ntAPPRIS P1 TSL 2 BASIC19.37■□□□□ 0.69
ABCA4P78363 GADD45G-202ENST00000375769 977 ntTSL 2 BASIC19.37■□□□□ 0.69
ABCA4P78363 KRT18P5-201ENST00000436075 1291 ntBASIC19.37■□□□□ 0.69
ABCA4P78363 PKDCC-201ENST00000294964 2502 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
ABCA4P78363 FAM53B-201ENST00000280780 1568 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
ABCA4P78363 CTBP2-211ENST00000494626 2014 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
ABCA4P78363 NR2F1-AS1-210ENST00000606739 1431 ntTSL 2 BASIC19.37■□□□□ 0.69
ABCA4P78363 C6orf201-202ENST00000380175 1834 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
ABCA4P78363 C5orf38-201ENST00000334000 890 ntAPPRIS P3 TSL 1 (best) BASIC19.37■□□□□ 0.69
ABCA4P78363 AC005775.1-201ENST00000592413 850 ntTSL 5 BASIC19.37■□□□□ 0.69
ABCA4P78363 TMEM191B-201ENST00000612978 1220 ntAPPRIS P2 TSL 5 BASIC19.37■□□□□ 0.69
ABCA4P78363 BOP1-205ENST00000569669 2303 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
ABCA4P78363 PLPP1-202ENST00000307259 1597 ntAPPRIS ALT1 TSL 1 (best) BASIC19.37■□□□□ 0.69
ABCA4P78363 E2F5-203ENST00000418930 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
ABCA4P78363 HAR1A-201ENST00000433161 1882 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
ABCA4P78363 NRG1-210ENST00000520407 1955 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
ABCA4P78363 GCLC-209ENST00000514004 2356 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
ABCA4P78363 ARL6IP4-201ENST00000315580 1644 ntAPPRIS P3 TSL 1 (best) BASIC19.37■□□□□ 0.69
ABCA4P78363 RING1-201ENST00000374656 1752 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
ABCA4P78363 SLC25A45-206ENST00000526432 894 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
ABCA4P78363 HOMER3-206ENST00000594439 982 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
ABCA4P78363 MADCAM1-208ENST00000621286 1203 ntAPPRIS ALT2 TSL 5 BASIC19.36■□□□□ 0.69
ABCA4P78363 SLC35A2-212ENST00000634665 486 ntTSL 4 BASIC19.36■□□□□ 0.69
ABCA4P78363 NAPA-201ENST00000263354 1839 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
ABCA4P78363 OTUD5-202ENST00000376488 2692 ntAPPRIS ALT1 TSL 1 (best) BASIC19.36■□□□□ 0.69
ABCA4P78363 ADSSL1-202ENST00000332972 1969 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
ABCA4P78363 RPL8-201ENST00000262584 1041 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
ABCA4P78363 ESRRAP2-201ENST00000418437 1549 ntBASIC19.36■□□□□ 0.69
ABCA4P78363 PEX11G-203ENST00000593942 1345 ntTSL 5 BASIC19.36■□□□□ 0.69
ABCA4P78363 CDIPT-207ENST00000566113 1671 ntTSL 2 BASIC19.36■□□□□ 0.69
ABCA4P78363 SP5-201ENST00000375281 2033 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 105.3 ms