Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 AC131212.1-201ENST00000613771 668 ntBASIC21.46■■□□□ 1.03
VMP1Q96GC9 TUBBP5-204ENST00000635438 565 ntTSL 4 BASIC21.46■■□□□ 1.03
VMP1Q96GC9 CLPTM1-201ENST00000337392 2604 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
VMP1Q96GC9 DENND1A-201ENST00000373618 3003 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
VMP1Q96GC9 COMMD5-201ENST00000305103 1373 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
VMP1Q96GC9 NTN1-201ENST00000173229 5954 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
VMP1Q96GC9 RNF40-201ENST00000324685 5634 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
VMP1Q96GC9 TAZ-216ENST00000613002 1485 ntTSL 1 (best) BASIC21.45■■□□□ 1.03
VMP1Q96GC9 MSX2-201ENST00000239243 2241 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.03
VMP1Q96GC9 ZBED3-201ENST00000255198 6172 ntAPPRIS P2 TSL 1 (best) BASIC21.45■■□□□ 1.02
VMP1Q96GC9 DONSON-210ENST00000453626 2332 ntTSL 5 BASIC21.45■■□□□ 1.02
VMP1Q96GC9 DRAP1-201ENST00000312515 989 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
VMP1Q96GC9 AC004448.1-201ENST00000458332 883 ntBASIC21.45■■□□□ 1.02
VMP1Q96GC9 AP002893.1-201ENST00000528885 684 ntTSL 2 BASIC21.45■■□□□ 1.02
VMP1Q96GC9 EXOG-217ENST00000630638 197 ntTSL 5 BASIC21.45■■□□□ 1.02
VMP1Q96GC9 CRLF1-201ENST00000392386 1792 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
VMP1Q96GC9 LRRC75A-201ENST00000409083 2656 ntAPPRIS P3 TSL 2 BASIC21.45■■□□□ 1.02
VMP1Q96GC9 STEAP2-207ENST00000402625 1372 ntTSL 5 BASIC21.45■■□□□ 1.02
VMP1Q96GC9 PTPRJ-201ENST00000418331 5122 ntAPPRIS P2 TSL 1 (best) BASIC21.45■■□□□ 1.02
VMP1Q96GC9 ZFYVE28-202ENST00000503000 1874 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
VMP1Q96GC9 RITA1-203ENST00000552495 1898 ntTSL 2 BASIC21.45■■□□□ 1.02
VMP1Q96GC9 TSEN54-201ENST00000333213 1944 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
VMP1Q96GC9 AC105219.1-201ENST00000531565 1963 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
VMP1Q96GC9 GP1BB-201ENST00000366425 1553 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
VMP1Q96GC9 PNCK-215ENST00000447676 1585 ntTSL 2 BASIC21.44■■□□□ 1.02
VMP1Q96GC9 LSR-202ENST00000354900 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC21.44■■□□□ 1.02
VMP1Q96GC9 ARX-201ENST00000379044 2876 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
VMP1Q96GC9 ECEL1-202ENST00000409941 2322 ntAPPRIS ALT1 TSL 1 (best) BASIC21.44■■□□□ 1.02
VMP1Q96GC9 ARSB-206ENST00000565165 1772 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
VMP1Q96GC9 PHF2-201ENST00000359246 5569 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
VMP1Q96GC9 CHKB-AS1-201ENST00000380711 578 ntTSL 2 BASIC21.44■■□□□ 1.02
VMP1Q96GC9 MOSPD3-204ENST00000424091 1115 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
VMP1Q96GC9 TRAF7-203ENST00000565383 799 ntTSL 5 BASIC21.44■■□□□ 1.02
VMP1Q96GC9 MIR6722-201ENST00000617286 78 ntBASIC21.44■■□□□ 1.02
VMP1Q96GC9 TMEM240-203ENST00000624426 796 ntTSL 3 BASIC21.44■■□□□ 1.02
VMP1Q96GC9 PNLIPRP2-205ENST00000611850 1407 ntTSL 5 BASIC21.44■■□□□ 1.02
VMP1Q96GC9 PARD3-213ENST00000545260 5740 ntAPPRIS ALT2 TSL 1 (best) BASIC21.44■■□□□ 1.02
VMP1Q96GC9 PANK1-201ENST00000307534 6976 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
VMP1Q96GC9 AL022069.1-201ENST00000568025 1636 ntBASIC21.44■■□□□ 1.02
VMP1Q96GC9 HLA-L-211ENST00000482052 1765 ntBASIC21.43■■□□□ 1.02
VMP1Q96GC9 ANO8-204ENST00000630631 1905 ntTSL 5 BASIC21.43■■□□□ 1.02
VMP1Q96GC9 BEST2-204ENST00000553030 2000 ntAPPRIS P1 TSL 5 BASIC21.43■■□□□ 1.02
VMP1Q96GC9 HAS1-201ENST00000222115 2087 ntAPPRIS P3 TSL 1 (best) BASIC21.43■■□□□ 1.02
VMP1Q96GC9 TMEM170A-206ENST00000569276 609 ntTSL 2 BASIC21.43■■□□□ 1.02
VMP1Q96GC9 MIR6724-1-201ENST00000616420 92 ntBASIC21.43■■□□□ 1.02
VMP1Q96GC9 MIR6724-2-201ENST00000616483 92 ntBASIC21.43■■□□□ 1.02
VMP1Q96GC9 MIR6724-4-201ENST00000617390 92 ntBASIC21.43■■□□□ 1.02
VMP1Q96GC9 MIR6724-3-201ENST00000622482 92 ntBASIC21.43■■□□□ 1.02
VMP1Q96GC9 ECE2-202ENST00000357474 2667 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
VMP1Q96GC9 AC131274.2-201ENST00000580697 1507 ntBASIC21.43■■□□□ 1.02
VMP1Q96GC9 C7orf49-203ENST00000430372 1579 ntTSL 5 BASIC21.43■■□□□ 1.02
VMP1Q96GC9 MRPL10-202ENST00000351111 1725 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
VMP1Q96GC9 DGCR6-208ENST00000608842 1837 ntTSL 2 BASIC21.43■■□□□ 1.02
VMP1Q96GC9 ZFAND4-205ENST00000374371 2283 ntTSL 5 BASIC21.43■■□□□ 1.02
VMP1Q96GC9 AMZ2-202ENST00000359904 2402 ntAPPRIS P1 TSL 2 BASIC21.43■■□□□ 1.02
VMP1Q96GC9 LGR4-201ENST00000379214 5206 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
VMP1Q96GC9 SH3RF3-201ENST00000309415 5803 ntAPPRIS P1 TSL 5 BASIC21.42■■□□□ 1.02
VMP1Q96GC9 RAB33A-201ENST00000257017 1258 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
VMP1Q96GC9 KCNK13-201ENST00000282146 2522 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
VMP1Q96GC9 AUH-201ENST00000303617 1490 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
VMP1Q96GC9 TMEM218-215ENST00000532407 1103 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
VMP1Q96GC9 TCEA1-214ENST00000640382 1234 ntTSL 5 BASIC21.42■■□□□ 1.02
VMP1Q96GC9 AC005551.1-201ENST00000641816 493 ntAPPRIS P1 BASIC21.42■■□□□ 1.02
VMP1Q96GC9 SLC25A42-201ENST00000318596 3120 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
VMP1Q96GC9 TSEN34-201ENST00000302937 2294 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
VMP1Q96GC9 HNRNPAB-208ENST00000515193 1595 ntAPPRIS ALT2 TSL 5 BASIC21.41■■□□□ 1.02
VMP1Q96GC9 H2AFY-217ENST00000511689 2789 ntAPPRIS P4 TSL 1 (best) BASIC21.41■■□□□ 1.02
VMP1Q96GC9 MYCN-201ENST00000281043 2602 ntAPPRIS P1 TSL 5 BASIC21.41■■□□□ 1.02
VMP1Q96GC9 SLAIN1-213ENST00000466548 2637 ntAPPRIS ALT2 TSL 5 BASIC21.41■■□□□ 1.02
VMP1Q96GC9 LSM4-201ENST00000252816 986 ntTSL 2 BASIC21.41■■□□□ 1.02
VMP1Q96GC9 TRIM7-202ENST00000334421 1228 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
VMP1Q96GC9 TSPAN17-204ENST00000503045 1019 ntTSL 5 BASIC21.41■■□□□ 1.02
VMP1Q96GC9 ADAD2-202ENST00000315906 1995 ntAPPRIS ALT2 TSL 1 (best) BASIC21.41■■□□□ 1.02
VMP1Q96GC9 BBC3-203ENST00000439096 1838 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
VMP1Q96GC9 LRRC45-201ENST00000306688 2701 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
VMP1Q96GC9 ATP13A2-215ENST00000617114 1723 ntTSL 5 BASIC21.41■■□□□ 1.02
VMP1Q96GC9 ZKSCAN7-206ENST00000431636 1692 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
VMP1Q96GC9 ME2-208ENST00000638937 2471 ntTSL 5 BASIC21.4■■□□□ 1.02
VMP1Q96GC9 ARL6IP4-210ENST00000453766 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC21.4■■□□□ 1.02
VMP1Q96GC9 CTSF-201ENST00000310325 2035 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
VMP1Q96GC9 EXOSC6-201ENST00000435634 5153 ntAPPRIS P1 BASIC21.4■■□□□ 1.02
VMP1Q96GC9 P2RX2-205ENST00000352418 1200 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
VMP1Q96GC9 NBPF26-209ENST00000624419 1133 ntTSL 5 BASIC21.4■■□□□ 1.02
VMP1Q96GC9 SLC35D3-201ENST00000331858 2359 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
VMP1Q96GC9 MOGS-202ENST00000409065 2668 ntTSL 5 BASIC21.4■■□□□ 1.02
VMP1Q96GC9 TSSK1B-201ENST00000390666 2478 ntAPPRIS P1 BASIC21.39■■□□□ 1.02
VMP1Q96GC9 AOC3-207ENST00000617500 2392 ntTSL 4 BASIC21.39■■□□□ 1.02
VMP1Q96GC9 IL17RE-201ENST00000383814 2704 ntAPPRIS P2 TSL 1 (best) BASIC21.39■■□□□ 1.02
VMP1Q96GC9 CD72-202ENST00000378430 585 ntTSL 3 BASIC21.39■■□□□ 1.01
VMP1Q96GC9 ERRFI1-203ENST00000469499 995 ntTSL 3 BASIC21.39■■□□□ 1.01
VMP1Q96GC9 CCDC9-201ENST00000221922 2093 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
VMP1Q96GC9 C1QL3-201ENST00000298943 2493 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
VMP1Q96GC9 INPP5J-206ENST00000404453 1613 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
VMP1Q96GC9 BDH1-207ENST00000441275 1605 ntTSL 5 BASIC21.39■■□□□ 1.01
VMP1Q96GC9 CAMK1-201ENST00000256460 1488 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
VMP1Q96GC9 AL161729.1-201ENST00000604104 1402 ntBASIC21.38■■□□□ 1.01
VMP1Q96GC9 ST3GAL5-231ENST00000639119 2131 ntTSL 5 BASIC21.38■■□□□ 1.01
VMP1Q96GC9 FUT11-201ENST00000372841 2056 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
VMP1Q96GC9 DAZAP1-205ENST00000587079 2086 ntAPPRIS ALT1 TSL 5 BASIC21.38■■□□□ 1.01
VMP1Q96GC9 HSD11B2-201ENST00000326152 1900 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
Retrieved 100 of 98,524 protein–RNA pairs in 23 ms