Protein–RNA interactions for Protein: P78363

ABCA4, Retinal-specific ATP-binding cassette transporter, humanhuman

Predictions only

Length 2,273 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA4P78363 NANOS2-201ENST00000341294 1657 ntAPPRIS P1 BASIC19.52■□□□□ 0.71
ABCA4P78363 SDF4-202ENST00000360001 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC19.52■□□□□ 0.71
ABCA4P78363 AC022211.4-201ENST00000625094 2161 ntBASIC19.51■□□□□ 0.71
ABCA4P78363 CTNNAL1-202ENST00000374593 761 ntTSL 3 BASIC19.51■□□□□ 0.71
ABCA4P78363 IGHV3-20-201ENST00000390606 415 ntAPPRIS P1 BASIC19.51■□□□□ 0.71
ABCA4P78363 C1QTNF1-207ENST00000580454 1396 ntAPPRIS P1 TSL 5 BASIC19.51■□□□□ 0.71
ABCA4P78363 EXOC3-209ENST00000512944 2825 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
ABCA4P78363 SNRNP70-201ENST00000221448 1603 ntTSL 2 BASIC19.51■□□□□ 0.71
ABCA4P78363 LRRC24-202ENST00000533758 1701 ntAPPRIS ALT2 TSL 5 BASIC19.51■□□□□ 0.71
ABCA4P78363 SESN3-202ENST00000416495 1408 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
ABCA4P78363 LINC00454-202ENST00000430978 1327 ntTSL 5 BASIC19.51■□□□□ 0.71
ABCA4P78363 SRM-201ENST00000376957 1266 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
ABCA4P78363 ACAP1-206ENST00000571471 320 ntTSL 2 BASIC19.5■□□□□ 0.71
ABCA4P78363 AC005410.1-201ENST00000579522 462 ntTSL 3 BASIC19.5■□□□□ 0.71
ABCA4P78363 PDCD5-204ENST00000586035 601 ntTSL 3 BASIC19.5■□□□□ 0.71
ABCA4P78363 SP2-202ENST00000613139 908 ntTSL 5 BASIC19.5■□□□□ 0.71
ABCA4P78363 TIMM50-201ENST00000314349 1612 ntAPPRIS P2 TSL 1 (best) BASIC19.5■□□□□ 0.71
ABCA4P78363 FGF19-201ENST00000294312 2447 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
ABCA4P78363 SLC35A2-201ENST00000247138 1672 ntAPPRIS P3 TSL 1 (best) BASIC19.5■□□□□ 0.71
ABCA4P78363 ACSS1-203ENST00000432802 2438 ntTSL 2 BASIC19.5■□□□□ 0.71
ABCA4P78363 NDUFB2-201ENST00000247866 504 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
ABCA4P78363 AL138963.3-201ENST00000610057 588 ntTSL 4 BASIC19.5■□□□□ 0.71
ABCA4P78363 PDIA6-201ENST00000272227 2338 ntAPPRIS P3 TSL 1 (best) BASIC19.5■□□□□ 0.71
ABCA4P78363 SPI1-202ENST00000378538 1403 ntAPPRIS P3 TSL 1 (best) BASIC19.5■□□□□ 0.71
ABCA4P78363 SNCB-206ENST00000614675 1407 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
ABCA4P78363 TRIOBP-203ENST00000403663 2324 ntAPPRIS ALT2 TSL 1 (best) BASIC19.49■□□□□ 0.71
ABCA4P78363 IDH2-202ENST00000540499 1453 ntTSL 2 BASIC19.49■□□□□ 0.71
ABCA4P78363 MFSD5-201ENST00000329548 1760 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
ABCA4P78363 FAM219A-202ENST00000379078 770 ntTSL 3 BASIC19.49■□□□□ 0.71
ABCA4P78363 FAM219A-205ENST00000379084 893 ntTSL 5 BASIC19.49■□□□□ 0.71
ABCA4P78363 SLC47A1P1-202ENST00000449666 945 ntBASIC19.49■□□□□ 0.71
ABCA4P78363 AL133516.1-201ENST00000633012 540 ntTSL 5 BASIC19.49■□□□□ 0.71
ABCA4P78363 SYNGR3-201ENST00000248121 2051 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
ABCA4P78363 DUSP8P4-201ENST00000399538 1761 ntBASIC19.49■□□□□ 0.71
ABCA4P78363 SLC52A2-202ENST00000402965 1777 ntAPPRIS P1 TSL 2 BASIC19.49■□□□□ 0.71
ABCA4P78363 PLPP5-201ENST00000419686 794 ntTSL 2 BASIC19.49■□□□□ 0.71
ABCA4P78363 ZNF276-202ENST00000443381 2267 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
ABCA4P78363 PPA1-202ENST00000373232 1295 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
ABCA4P78363 LINC01942-201ENST00000521373 513 ntTSL 4 BASIC19.48■□□□□ 0.71
ABCA4P78363 MADCAM1-205ENST00000613880 1509 ntAPPRIS ALT2 TSL 5 BASIC19.48■□□□□ 0.71
ABCA4P78363 AC062017.1-203ENST00000413029 455 ntTSL 2 BASIC19.48■□□□□ 0.71
ABCA4P78363 GRAMD4P2-201ENST00000423297 1097 ntBASIC19.48■□□□□ 0.71
ABCA4P78363 AC008443.4-201ENST00000503314 456 ntTSL 4 BASIC19.48■□□□□ 0.71
ABCA4P78363 DNAJB11-201ENST00000265028 1688 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
ABCA4P78363 SYNGR3-202ENST00000562045 1743 ntTSL 2 BASIC19.47■□□□□ 0.71
ABCA4P78363 SLC22A18-201ENST00000312221 1628 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
ABCA4P78363 PICALM-224ENST00000630913 2261 ntTSL 5 BASIC19.47■□□□□ 0.71
ABCA4P78363 TANGO2-207ENST00000420290 1859 ntTSL 2 BASIC19.47■□□□□ 0.71
ABCA4P78363 RFC2-201ENST00000055077 1695 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
ABCA4P78363 GUK1-207ENST00000366726 873 ntAPPRIS P3 TSL 3 BASIC19.47■□□□□ 0.71
ABCA4P78363 CCDC28B-201ENST00000373602 1089 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
ABCA4P78363 HES3-201ENST00000377898 697 ntAPPRIS P1 TSL 2 BASIC19.47■□□□□ 0.71
ABCA4P78363 AC010336.5-201ENST00000594308 317 ntTSL 3 BASIC19.47■□□□□ 0.71
ABCA4P78363 SPATA22-214ENST00000575375 1374 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
ABCA4P78363 SLC35B2-202ENST00000393812 2043 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
ABCA4P78363 NMRAL1-202ENST00000404295 1233 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
ABCA4P78363 OIP5-AS1-208ENST00000560706 473 ntTSL 5 BASIC19.46■□□□□ 0.71
ABCA4P78363 SUZ12P1-202ENST00000578070 929 ntTSL 5 BASIC19.46■□□□□ 0.71
ABCA4P78363 EI24-204ENST00000527235 1625 ntTSL 5 BASIC19.46■□□□□ 0.71
ABCA4P78363 ANO8-204ENST00000630631 1905 ntTSL 5 BASIC19.46■□□□□ 0.71
ABCA4P78363 FXYD3-201ENST00000344013 1404 ntTSL 5 BASIC19.46■□□□□ 0.71
ABCA4P78363 AL391650.1-201ENST00000448923 1468 ntAPPRIS P1 TSL 2 BASIC19.46■□□□□ 0.71
ABCA4P78363 ST7L-221ENST00000490067 1780 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
ABCA4P78363 ROM1-201ENST00000278833 1878 ntAPPRIS P2 TSL 1 (best) BASIC19.46■□□□□ 0.71
ABCA4P78363 SLC19A1-202ENST00000380010 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
ABCA4P78363 AC093817.1-201ENST00000507296 812 ntTSL 3 BASIC19.46■□□□□ 0.71
ABCA4P78363 AL137784.2-201ENST00000607332 1000 ntBASIC19.46■□□□□ 0.71
ABCA4P78363 AL358852.1-201ENST00000623174 1268 ntBASIC19.46■□□□□ 0.71
ABCA4P78363 POLD2-218ENST00000610533 1619 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
ABCA4P78363 SCN1B-206ENST00000638536 1600 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
ABCA4P78363 SLC12A2-202ENST00000343225 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
ABCA4P78363 MT2A-201ENST00000245185 786 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
ABCA4P78363 AC123595.1-201ENST00000440769 1046 ntBASIC19.45■□□□□ 0.7
ABCA4P78363 ARFIP2-205ENST00000525235 852 ntTSL 2 BASIC19.45■□□□□ 0.7
ABCA4P78363 SLC39A3-203ENST00000545664 1219 ntTSL 2 BASIC19.45■□□□□ 0.7
ABCA4P78363 SNAI3-AS1-201ENST00000563261 998 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
ABCA4P78363 GTPBP3-202ENST00000358792 1951 ntAPPRIS P4 TSL 2 BASIC19.45■□□□□ 0.7
ABCA4P78363 ABL2-203ENST00000392043 2140 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
ABCA4P78363 CBWD1-203ENST00000377400 1792 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
ABCA4P78363 PHF23-205ENST00000571362 1768 ntTSL 2 BASIC19.45■□□□□ 0.7
ABCA4P78363 MIR572-201ENST00000384983 95 ntBASIC19.45■□□□□ 0.7
ABCA4P78363 NDUFAF8-201ENST00000431388 615 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
ABCA4P78363 C17orf49-202ENST00000546495 996 ntAPPRIS ALT1 TSL 2 BASIC19.45■□□□□ 0.7
ABCA4P78363 ANAPC11-219ENST00000583839 499 ntAPPRIS P1 TSL 2 BASIC19.45■□□□□ 0.7
ABCA4P78363 DNAJC25-GNG10-201ENST00000374294 1448 ntAPPRIS P1 TSL 2 BASIC19.45■□□□□ 0.7
ABCA4P78363 PRDX4-202ENST00000379341 1005 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
ABCA4P78363 AC024267.6-201ENST00000580603 583 ntTSL 3 BASIC19.44■□□□□ 0.7
ABCA4P78363 PCMT1-202ENST00000367380 1628 ntTSL 2 BASIC19.44■□□□□ 0.7
ABCA4P78363 PCMT1-211ENST00000544496 1628 ntTSL 2 BASIC19.44■□□□□ 0.7
ABCA4P78363 SHF-207ENST00000560540 2062 ntTSL 5 BASIC19.44■□□□□ 0.7
ABCA4P78363 WIPI2-202ENST00000382384 1948 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
ABCA4P78363 YBX1P1-201ENST00000445822 960 ntBASIC19.44■□□□□ 0.7
ABCA4P78363 BIN1-206ENST00000352848 2209 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
ABCA4P78363 STARD3NL-201ENST00000009041 1728 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
ABCA4P78363 ARRB2-210ENST00000572457 1660 ntTSL 5 BASIC19.43■□□□□ 0.7
ABCA4P78363 AK1-201ENST00000223836 736 ntTSL 3 BASIC19.43■□□□□ 0.7
ABCA4P78363 TRIR-201ENST00000242784 970 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
ABCA4P78363 KRTAP5-2-201ENST00000412090 1118 ntAPPRIS P1 BASIC19.43■□□□□ 0.7
ABCA4P78363 NPB-202ENST00000573081 2154 ntAPPRIS ALT2 BASIC19.43■□□□□ 0.7
ABCA4P78363 DGCR6-208ENST00000608842 1837 ntTSL 2 BASIC19.43■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 76.3 ms