Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 DNAAF3-203ENST00000524407 2059 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.5
HMGB3O15347 PPT2-248ENST00000395523 2111 ntAPPRIS ALT2 TSL 5 BASIC18.14■□□□□ 0.5
HMGB3O15347 EDEM1-201ENST00000256497 6146 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
HMGB3O15347 SMARCD2-201ENST00000225742 1800 ntTSL 1 (best) BASIC18.14■□□□□ 0.5
HMGB3O15347 PVT1-212ENST00000521951 1535 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
HMGB3O15347 EHBP1-209ENST00000431489 5076 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
HMGB3O15347 LTB4R2-205ENST00000543919 1560 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
HMGB3O15347 FIZ1-201ENST00000221665 2660 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
HMGB3O15347 TMEM102-202ENST00000396568 1962 ntAPPRIS P1 TSL 2 BASIC18.14■□□□□ 0.49
HMGB3O15347 FAHD1-203ENST00000427358 1974 ntAPPRIS P1 BASIC18.14■□□□□ 0.49
HMGB3O15347 PLEKHF2-202ENST00000519516 1144 ntAPPRIS P1 TSL 3 BASIC18.14■□□□□ 0.49
HMGB3O15347 OSCAR-209ENST00000616215 2016 ntAPPRIS ALT2 TSL 5 BASIC18.14■□□□□ 0.49
HMGB3O15347 UBR3-203ENST00000418381 7951 ntAPPRIS P1 TSL 5 BASIC18.14■□□□□ 0.49
HMGB3O15347 USP48-205ENST00000421625 2818 ntTSL 2 BASIC18.14■□□□□ 0.49
HMGB3O15347 TBX1-202ENST00000332710 2084 ntAPPRIS P4 TSL 1 (best) BASIC18.14■□□□□ 0.49
HMGB3O15347 SKIDA1-201ENST00000444772 2667 ntAPPRIS ALT2 TSL 5 BASIC18.14■□□□□ 0.49
HMGB3O15347 C1orf229-201ENST00000623686 2258 ntBASIC18.14■□□□□ 0.49
HMGB3O15347 SYT7-202ENST00000535826 1621 ntTSL 5 BASIC18.13■□□□□ 0.49
HMGB3O15347 ICAM5-201ENST00000221980 3000 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
HMGB3O15347 PLEKHA8-208ENST00000622102 2140 ntTSL 5 BASIC18.13■□□□□ 0.49
HMGB3O15347 PLCH2-205ENST00000449969 5450 ntTSL 5 BASIC18.13■□□□□ 0.49
HMGB3O15347 GSN-204ENST00000373818 2657 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
HMGB3O15347 SARDH-203ENST00000371868 2266 ntTSL 2 BASIC18.13■□□□□ 0.49
HMGB3O15347 FAM72A-202ENST00000367128 2398 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
HMGB3O15347 FAM72D-201ENST00000400889 2397 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
HMGB3O15347 SLC35B2-201ENST00000393810 1898 ntTSL 2 BASIC18.13■□□□□ 0.49
HMGB3O15347 TMEM200B-201ENST00000420504 2553 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
HMGB3O15347 NEIL1-206ENST00000564784 2019 ntAPPRIS P1 TSL 2 BASIC18.13■□□□□ 0.49
HMGB3O15347 CCND3-223ENST00000616010 2047 ntTSL 5 BASIC18.13■□□□□ 0.49
HMGB3O15347 HABP4-201ENST00000375249 2615 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
HMGB3O15347 IGF2-AS-201ENST00000381361 2063 ntTSL 2 BASIC18.13■□□□□ 0.49
HMGB3O15347 RIMKLB-202ENST00000357529 5830 ntAPPRIS P1 TSL 5 BASIC18.13■□□□□ 0.49
HMGB3O15347 ATG16L2-205ENST00000534905 1614 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
HMGB3O15347 SNX8-201ENST00000222990 4727 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
HMGB3O15347 MAP7D1-201ENST00000316156 3456 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
HMGB3O15347 DCBLD2-201ENST00000326840 6122 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
HMGB3O15347 LINC01971-201ENST00000617888 1048 ntBASIC18.12■□□□□ 0.49
HMGB3O15347 POLR3H-201ENST00000337566 1330 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
HMGB3O15347 RNF38-204ENST00000357058 5254 ntAPPRIS P1 TSL 5 BASIC18.12■□□□□ 0.49
HMGB3O15347 UBALD2-201ENST00000327490 1593 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
HMGB3O15347 IRX2-202ENST00000382611 2630 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
HMGB3O15347 C21orf2-203ENST00000397956 1634 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
HMGB3O15347 SDF4-202ENST00000360001 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
HMGB3O15347 ZNF837-202ENST00000597582 1969 ntAPPRIS P1 TSL 2 BASIC18.11■□□□□ 0.49
HMGB3O15347 MTMR14-202ENST00000351233 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
HMGB3O15347 WAC-205ENST00000375664 5924 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
HMGB3O15347 AVPR1A-201ENST00000299178 5963 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
HMGB3O15347 CTXN1-201ENST00000318978 1274 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
HMGB3O15347 NPHP3-202ENST00000383282 782 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
HMGB3O15347 RANBP1-202ENST00000402752 1132 ntAPPRIS ALT1 TSL 1 (best) BASIC18.11■□□□□ 0.49
HMGB3O15347 WNT5A-AS1-201ENST00000469484 500 ntTSL 3 BASIC18.11■□□□□ 0.49
HMGB3O15347 CAAP1-205ENST00000520187 773 ntTSL 5 BASIC18.11■□□□□ 0.49
HMGB3O15347 LINC01896-206ENST00000575722 1256 ntTSL 2 BASIC18.11■□□□□ 0.49
HMGB3O15347 SLC52A2-202ENST00000402965 1777 ntAPPRIS P1 TSL 2 BASIC18.11■□□□□ 0.49
HMGB3O15347 ADAMTS17-201ENST00000268070 6207 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
HMGB3O15347 REPIN1-214ENST00000489432 2058 ntAPPRIS ALT2 TSL 2 BASIC18.11■□□□□ 0.49
HMGB3O15347 TEAD1-206ENST00000527636 2544 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
HMGB3O15347 BSN-AS2-201ENST00000421598 2603 ntTSL 2 BASIC18.11■□□□□ 0.49
HMGB3O15347 GOLGA3-203ENST00000456883 5496 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
HMGB3O15347 SH2B3-201ENST00000341259 5406 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
HMGB3O15347 MAN1A1-201ENST00000368468 5014 ntAPPRIS P1 TSL 2 BASIC18.1■□□□□ 0.49
HMGB3O15347 IRX2-201ENST00000302057 2456 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
HMGB3O15347 PPP2R3B-202ENST00000390665 2151 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
HMGB3O15347 SLC39A14-202ENST00000289952 2137 ntAPPRIS ALT2 TSL 2 BASIC18.1■□□□□ 0.49
HMGB3O15347 NIPSNAP2-201ENST00000322090 1999 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
HMGB3O15347 OSCAR-207ENST00000391761 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
HMGB3O15347 HR-201ENST00000312841 5351 ntTSL 5 BASIC18.1■□□□□ 0.49
HMGB3O15347 CDX1-201ENST00000231656 1758 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
HMGB3O15347 KCTD15-207ENST00000589786 1625 ntAPPRIS P1 TSL 2 BASIC18.1■□□□□ 0.49
HMGB3O15347 LDHB-203ENST00000396076 1538 ntAPPRIS P1 TSL 5 BASIC18.1■□□□□ 0.49
HMGB3O15347 HSD17B1-201ENST00000225929 1265 ntAPPRIS ALT2 TSL 2 BASIC18.1■□□□□ 0.49
HMGB3O15347 ARHGEF7-AS2-201ENST00000425094 1239 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
HMGB3O15347 IQSEC2-218ENST00000640694 5958 ntAPPRIS ALT2 TSL 5 BASIC18.1■□□□□ 0.49
HMGB3O15347 HTRA2-201ENST00000258080 2370 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
HMGB3O15347 WWC1-201ENST00000265293 7130 ntAPPRIS P3 TSL 1 (best) BASIC18.1■□□□□ 0.49
HMGB3O15347 C6orf136-201ENST00000293604 1978 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
HMGB3O15347 ANXA8-204ENST00000583911 1874 ntTSL 2 BASIC18.09■□□□□ 0.49
HMGB3O15347 LINC02043-201ENST00000419745 1832 ntTSL 2 BASIC18.09■□□□□ 0.49
HMGB3O15347 DNM2-205ENST00000585892 2774 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
HMGB3O15347 NOM1-201ENST00000275820 6077 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
HMGB3O15347 FLT1-201ENST00000282397 7092 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
HMGB3O15347 BICRA-201ENST00000396720 5739 ntAPPRIS P2 TSL 5 BASIC18.09■□□□□ 0.49
HMGB3O15347 CERS1-205ENST00000623927 2558 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
HMGB3O15347 SLC25A27-202ENST00000411689 2526 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
HMGB3O15347 DISC1-223ENST00000628350 2363 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
HMGB3O15347 POLDIP2-201ENST00000540200 2121 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
HMGB3O15347 CMTM4-201ENST00000330687 3414 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
HMGB3O15347 KISS1R-201ENST00000234371 1625 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
HMGB3O15347 PAOX-203ENST00000357296 1633 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
HMGB3O15347 NIPA2-203ENST00000398013 2280 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
HMGB3O15347 CHST6-202ENST00000390664 2093 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
HMGB3O15347 WDR86-201ENST00000334493 2023 ntAPPRIS P1 TSL 5 BASIC18.08■□□□□ 0.49
HMGB3O15347 SKIDA1-202ENST00000449193 6598 ntAPPRIS P2 TSL 3 BASIC18.08■□□□□ 0.49
HMGB3O15347 RBMXL2-201ENST00000306904 1874 ntAPPRIS P1 BASIC18.08■□□□□ 0.49
HMGB3O15347 CACNG6-202ENST00000346968 645 ntTSL 5 BASIC18.08■□□□□ 0.48
HMGB3O15347 PRSS12-201ENST00000296498 4809 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
HMGB3O15347 ADCY9-201ENST00000294016 7725 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
HMGB3O15347 HHEX-201ENST00000282728 1727 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
HMGB3O15347 CKB-201ENST00000348956 1709 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
HMGB3O15347 LY6K-201ENST00000292430 2671 ntAPPRIS P3 TSL 1 (best) BASIC18.08■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 22 ms