Protein–RNA interactions for Protein: Q9Y5I3

PCDHA1, Protocadherin alpha-1, humanhuman

Predictions only

Length 950 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA1Q9Y5I3 SPHK1-210ENST00000592299 1821 ntAPPRIS P3 TSL 1 (best) BASIC26.11■■□□□ 1.77
PCDHA1Q9Y5I3 UXS1-201ENST00000283148 2099 ntAPPRIS ALT1 TSL 2 BASIC26.11■■□□□ 1.77
PCDHA1Q9Y5I3 TNFRSF6B-201ENST00000369996 1124 ntAPPRIS P1 TSL 1 (best) BASIC26.11■■□□□ 1.77
PCDHA1Q9Y5I3 CCDC189-211ENST00000545825 1046 ntTSL 1 (best) BASIC26.11■■□□□ 1.77
PCDHA1Q9Y5I3 AC110285.6-201ENST00000617652 491 ntBASIC26.11■■□□□ 1.77
PCDHA1Q9Y5I3 GRAMD1B-217ENST00000640939 1212 ntTSL 5 BASIC26.11■■□□□ 1.77
PCDHA1Q9Y5I3 TLX1-203ENST00000467928 1838 ntTSL 1 (best) BASIC26.11■■□□□ 1.77
PCDHA1Q9Y5I3 EGR4-201ENST00000436467 2377 ntAPPRIS ALT2 TSL 1 (best) BASIC26.11■■□□□ 1.77
PCDHA1Q9Y5I3 GLRX3-201ENST00000331244 1302 ntAPPRIS P1 TSL 1 (best) BASIC26.11■■□□□ 1.77
PCDHA1Q9Y5I3 SMOX-201ENST00000278795 2164 ntTSL 1 (best) BASIC26.1■■□□□ 1.77
PCDHA1Q9Y5I3 RILP-201ENST00000301336 1771 ntAPPRIS P1 TSL 1 (best) BASIC26.1■■□□□ 1.77
PCDHA1Q9Y5I3 PRICKLE4-201ENST00000394259 939 ntAPPRIS ALT2 TSL 5 BASIC26.1■■□□□ 1.77
PCDHA1Q9Y5I3 CLPSL2-202ENST00000403376 405 ntAPPRIS P3 TSL 1 (best) BASIC26.1■■□□□ 1.77
PCDHA1Q9Y5I3 MEIS1-AS3-201ENST00000454167 707 ntTSL 4 BASIC26.1■■□□□ 1.77
PCDHA1Q9Y5I3 CALM1-203ENST00000544280 1064 ntTSL 1 (best) BASIC26.1■■□□□ 1.77
PCDHA1Q9Y5I3 PLPP1-202ENST00000307259 1597 ntAPPRIS ALT1 TSL 1 (best) BASIC26.1■■□□□ 1.77
PCDHA1Q9Y5I3 RUNDC3A-202ENST00000426726 2048 ntAPPRIS P1 TSL 1 (best) BASIC26.1■■□□□ 1.77
PCDHA1Q9Y5I3 SNUPN-207ENST00000567134 1641 ntAPPRIS P1 TSL 5 BASIC26.1■■□□□ 1.77
PCDHA1Q9Y5I3 RPIA-201ENST00000283646 1848 ntAPPRIS P1 TSL 1 (best) BASIC26.09■■□□□ 1.77
PCDHA1Q9Y5I3 RARA-204ENST00000394089 2024 ntAPPRIS P1 TSL 2 BASIC26.09■■□□□ 1.77
PCDHA1Q9Y5I3 GNAS-201ENST00000265620 1866 ntAPPRIS P3 TSL 1 (best) BASIC26.09■■□□□ 1.77
PCDHA1Q9Y5I3 DNPH1-201ENST00000230431 657 ntAPPRIS P1 TSL 1 (best) BASIC26.09■■□□□ 1.77
PCDHA1Q9Y5I3 GATA2-AS1-201ENST00000464242 1163 ntTSL 2 BASIC26.09■■□□□ 1.77
PCDHA1Q9Y5I3 RPRD1A-207ENST00000588737 1264 ntTSL 2 BASIC26.09■■□□□ 1.77
PCDHA1Q9Y5I3 AC004812.2-201ENST00000611079 2094 ntBASIC26.09■■□□□ 1.77
PCDHA1Q9Y5I3 EEF1D-201ENST00000317198 1458 ntAPPRIS ALT2 TSL 5 BASIC26.09■■□□□ 1.77
PCDHA1Q9Y5I3 PSKH1-202ENST00000570631 1509 ntTSL 1 (best) BASIC26.09■■□□□ 1.77
PCDHA1Q9Y5I3 NFKBIE-201ENST00000275015 2581 ntTSL 1 (best) BASIC26.08■■□□□ 1.77
PCDHA1Q9Y5I3 SHD-204ENST00000599689 1729 ntTSL 5 BASIC26.08■■□□□ 1.77
PCDHA1Q9Y5I3 KRTAP5-4-202ENST00000616115 660 ntAPPRIS ALT2 TSL 5 BASIC26.08■■□□□ 1.77
PCDHA1Q9Y5I3 UBAP1L-203ENST00000559089 1694 ntAPPRIS P1 TSL 1 (best) BASIC26.08■■□□□ 1.77
PCDHA1Q9Y5I3 ZFYVE28-202ENST00000503000 1874 ntTSL 1 (best) BASIC26.08■■□□□ 1.77
PCDHA1Q9Y5I3 GTF2IP1-204ENST00000616377 2632 ntTSL 2 BASIC26.08■■□□□ 1.77
PCDHA1Q9Y5I3 UROS-204ENST00000368797 1313 ntAPPRIS P1 TSL 1 (best) BASIC26.08■■□□□ 1.77
PCDHA1Q9Y5I3 TMEM121-202ENST00000431372 1519 ntAPPRIS P1 TSL 5 BASIC26.08■■□□□ 1.77
PCDHA1Q9Y5I3 C17orf82-201ENST00000623772 1530 ntBASIC26.08■■□□□ 1.77
PCDHA1Q9Y5I3 NAGLU-201ENST00000225927 2544 ntAPPRIS P1 TSL 1 (best) BASIC26.08■■□□□ 1.76
PCDHA1Q9Y5I3 SNRNP70-201ENST00000221448 1603 ntTSL 2 BASIC26.07■■□□□ 1.76
PCDHA1Q9Y5I3 GGTA1P-203ENST00000481799 1487 ntTSL 1 (best) BASIC26.07■■□□□ 1.76
PCDHA1Q9Y5I3 RALB-208ENST00000631312 311 ntTSL 5 BASIC26.07■■□□□ 1.76
PCDHA1Q9Y5I3 SPG21-202ENST00000416889 1533 ntTSL 2 BASIC26.07■■□□□ 1.76
PCDHA1Q9Y5I3 ZC3H14-202ENST00000302216 2560 ntTSL 1 (best) BASIC26.06■■□□□ 1.76
PCDHA1Q9Y5I3 CBWD2-203ENST00000416503 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC26.06■■□□□ 1.76
PCDHA1Q9Y5I3 C14orf80-206ENST00000392527 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC26.06■■□□□ 1.76
PCDHA1Q9Y5I3 ACOT1-201ENST00000311148 1713 ntAPPRIS P1 TSL 1 (best) BASIC26.06■■□□□ 1.76
PCDHA1Q9Y5I3 ZNRF1-201ENST00000320619 2479 ntTSL 1 (best) BASIC26.06■■□□□ 1.76
PCDHA1Q9Y5I3 RHOQ-201ENST00000238738 2975 ntAPPRIS P1 TSL 1 (best) BASIC26.06■■□□□ 1.76
PCDHA1Q9Y5I3 HEXDC-202ENST00000337014 2285 ntTSL 1 (best) BASIC26.06■■□□□ 1.76
PCDHA1Q9Y5I3 MYL5-208ENST00000511290 781 ntTSL 1 (best) BASIC26.06■■□□□ 1.76
PCDHA1Q9Y5I3 ARHGDIA-217ENST00000584461 886 ntTSL 2 BASIC26.06■■□□□ 1.76
PCDHA1Q9Y5I3 PTX3-201ENST00000295927 1940 ntAPPRIS P1 TSL 1 (best) BASIC26.06■■□□□ 1.76
PCDHA1Q9Y5I3 PREB-202ENST00000406567 1910 ntTSL 5 BASIC26.06■■□□□ 1.76
PCDHA1Q9Y5I3 OAS3-205ENST00000548514 1392 ntTSL 2 BASIC26.06■■□□□ 1.76
PCDHA1Q9Y5I3 NANOS2-201ENST00000341294 1657 ntAPPRIS P1 BASIC26.06■■□□□ 1.76
PCDHA1Q9Y5I3 OSCAR-211ENST00000617140 1547 ntAPPRIS ALT2 TSL 5 BASIC26.05■■□□□ 1.76
PCDHA1Q9Y5I3 ARFIP2-202ENST00000396777 1868 ntAPPRIS P1 TSL 2 BASIC26.05■■□□□ 1.76
PCDHA1Q9Y5I3 PRMT5-213ENST00000553897 1857 ntTSL 2 BASIC26.05■■□□□ 1.76
PCDHA1Q9Y5I3 UNC93B3-201ENST00000308076 687 ntBASIC26.05■■□□□ 1.76
PCDHA1Q9Y5I3 POLR2F-211ENST00000488684 564 ntTSL 2 BASIC26.05■■□□□ 1.76
PCDHA1Q9Y5I3 CCDC166-201ENST00000542437 1320 ntAPPRIS P1 TSL 2 BASIC26.05■■□□□ 1.76
PCDHA1Q9Y5I3 PINK1-201ENST00000321556 2660 ntAPPRIS P1 TSL 1 (best) BASIC26.05■■□□□ 1.76
PCDHA1Q9Y5I3 CBWD1-203ENST00000377400 1792 ntAPPRIS P1 TSL 1 (best) BASIC26.05■■□□□ 1.76
PCDHA1Q9Y5I3 ACBD4-214ENST00000591859 1998 ntTSL 1 (best) BASIC26.04■■□□□ 1.76
PCDHA1Q9Y5I3 MAGI2-215ENST00000628980 6212 ntTSL 5 BASIC26.04■■□□□ 1.76
PCDHA1Q9Y5I3 DPP10-AS1-201ENST00000432658 730 ntTSL 1 (best) BASIC26.04■■□□□ 1.76
PCDHA1Q9Y5I3 PIP5K1C-203ENST00000539785 2289 ntAPPRIS ALT2 TSL 2 BASIC26.03■■□□□ 1.76
PCDHA1Q9Y5I3 PPP1R1B-201ENST00000254079 1845 ntAPPRIS P1 TSL 1 (best) BASIC26.03■■□□□ 1.76
PCDHA1Q9Y5I3 UFD1-201ENST00000263202 1814 ntAPPRIS P1 TSL 1 (best) BASIC26.03■■□□□ 1.76
PCDHA1Q9Y5I3 MIR638-201ENST00000385237 100 ntBASIC26.03■■□□□ 1.76
PCDHA1Q9Y5I3 AC099791.2-201ENST00000605725 427 ntBASIC26.03■■□□□ 1.76
PCDHA1Q9Y5I3 ECHDC1-203ENST00000368291 1354 ntTSL 2 BASIC26.03■■□□□ 1.76
PCDHA1Q9Y5I3 ODF3L2-201ENST00000315489 1604 ntAPPRIS P2 TSL 1 (best) BASIC26.03■■□□□ 1.76
PCDHA1Q9Y5I3 SLC35C1-202ENST00000442528 1756 ntTSL 1 (best) BASIC26.02■■□□□ 1.76
PCDHA1Q9Y5I3 UBALD1-201ENST00000283474 1413 ntAPPRIS P1 TSL 1 (best) BASIC26.02■■□□□ 1.76
PCDHA1Q9Y5I3 SETD9-201ENST00000285947 1619 ntAPPRIS P1 TSL 1 (best) BASIC26.02■■□□□ 1.76
PCDHA1Q9Y5I3 PON2-202ENST00000433091 1726 ntTSL 1 (best) BASIC26.02■■□□□ 1.76
PCDHA1Q9Y5I3 LRRC24-201ENST00000529415 1758 ntAPPRIS P2 TSL 1 (best) BASIC26.02■■□□□ 1.76
PCDHA1Q9Y5I3 B3GAT3-201ENST00000265471 1641 ntAPPRIS P1 TSL 1 (best) BASIC26.01■■□□□ 1.75
PCDHA1Q9Y5I3 HOMER2-201ENST00000304231 1990 ntAPPRIS P4 TSL 5 BASIC26.01■■□□□ 1.75
PCDHA1Q9Y5I3 PYCARD-202ENST00000350605 696 ntTSL 1 (best) BASIC26.01■■□□□ 1.75
PCDHA1Q9Y5I3 PPIL6-203ENST00000440797 1693 ntTSL 1 (best) BASIC26.01■■□□□ 1.75
PCDHA1Q9Y5I3 ZNF767P-202ENST00000472212 2100 ntTSL 1 (best) BASIC26.01■■□□□ 1.75
PCDHA1Q9Y5I3 TYROBP-203ENST00000544690 522 ntTSL 1 (best) BASIC26.01■■□□□ 1.75
PCDHA1Q9Y5I3 NKILA-201ENST00000613231 537 ntTSL 4 BASIC26.01■■□□□ 1.75
PCDHA1Q9Y5I3 SLC35A3-216ENST00000639221 1032 ntTSL 5 BASIC26.01■■□□□ 1.75
PCDHA1Q9Y5I3 AC064853.3-201ENST00000641801 1658 ntAPPRIS P1 BASIC26.01■■□□□ 1.75
PCDHA1Q9Y5I3 IFNGR2-202ENST00000381995 1742 ntAPPRIS ALT2 TSL 5 BASIC26■■□□□ 1.75
PCDHA1Q9Y5I3 PON2-218ENST00000633531 1653 ntAPPRIS P1 TSL 1 (best) BASIC26■■□□□ 1.75
PCDHA1Q9Y5I3 AC019069.1-201ENST00000610008 1333 ntBASIC26■■□□□ 1.75
PCDHA1Q9Y5I3 NRL-205ENST00000560550 788 ntTSL 1 (best) BASIC26■■□□□ 1.75
PCDHA1Q9Y5I3 C17orf74-202ENST00000574034 1287 ntTSL 1 (best) BASIC26■■□□□ 1.75
PCDHA1Q9Y5I3 AC092171.4-201ENST00000609130 632 ntBASIC26■■□□□ 1.75
PCDHA1Q9Y5I3 SMIM29-205ENST00000468145 903 ntTSL 2 BASIC25.99■■□□□ 1.75
PCDHA1Q9Y5I3 SMIM29-207ENST00000481533 1053 ntAPPRIS P1 TSL 1 (best) BASIC25.99■■□□□ 1.75
PCDHA1Q9Y5I3 PBX2P1-201ENST00000493219 1291 ntBASIC25.99■■□□□ 1.75
PCDHA1Q9Y5I3 DUX4L19-201ENST00000557448 1267 ntBASIC25.99■■□□□ 1.75
PCDHA1Q9Y5I3 PPP1R14A-204ENST00000591291 433 ntTSL 5 BASIC25.99■■□□□ 1.75
PCDHA1Q9Y5I3 B3GALT4-204ENST00000451237 1694 ntAPPRIS P1 BASIC25.99■■□□□ 1.75
PCDHA1Q9Y5I3 PCYT2-203ENST00000538936 5147 ntTSL 1 (best) BASIC25.99■■□□□ 1.75
PCDHA1Q9Y5I3 SCAMP3-202ENST00000355379 1537 ntTSL 1 (best) BASIC25.98■■□□□ 1.75
Retrieved 100 of 98,524 protein–RNA pairs in 23.4 ms