Protein–RNA interactions for Protein: P53804

TTC3, E3 ubiquitin-protein ligase TTC3, humanhuman

Predictions only

Length 2,025 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TTC3P53804 SLC10A4-201ENST00000273861 1790 ntAPPRIS P1 TSL 1 (best) BASIC24.64■■□□□ 1.53
TTC3P53804 SLC35A2-201ENST00000247138 1672 ntAPPRIS P3 TSL 1 (best) BASIC24.64■■□□□ 1.53
TTC3P53804 ZFYVE19-201ENST00000299173 1555 ntAPPRIS ALT2 TSL 1 (best) BASIC24.64■■□□□ 1.53
TTC3P53804 HACD1-201ENST00000326961 773 ntTSL 2 BASIC24.64■■□□□ 1.53
TTC3P53804 MPST-208ENST00000628507 698 ntTSL 5 BASIC24.64■■□□□ 1.53
TTC3P53804 TANGO2-207ENST00000420290 1859 ntTSL 2 BASIC24.64■■□□□ 1.53
TTC3P53804 TMEM98-202ENST00000394642 1683 ntAPPRIS P1 TSL 2 BASIC24.63■■□□□ 1.53
TTC3P53804 RFC2-201ENST00000055077 1695 ntAPPRIS P1 TSL 1 (best) BASIC24.63■■□□□ 1.53
TTC3P53804 SLC35B2-202ENST00000393812 2043 ntAPPRIS P1 TSL 1 (best) BASIC24.63■■□□□ 1.53
TTC3P53804 FBXW5-201ENST00000325285 2274 ntAPPRIS P1 TSL 1 (best) BASIC24.63■■□□□ 1.53
TTC3P53804 ATP13A2-215ENST00000617114 1723 ntTSL 5 BASIC24.63■■□□□ 1.53
TTC3P53804 METTL21A-210ENST00000458426 1366 ntTSL 1 (best) BASIC24.63■■□□□ 1.53
TTC3P53804 MIR3181-201ENST00000578512 73 ntBASIC24.63■■□□□ 1.53
TTC3P53804 AC011446.1-201ENST00000591825 458 ntTSL 2 BASIC24.63■■□□□ 1.53
TTC3P53804 TNK2-201ENST00000333602 5270 ntAPPRIS P1 TSL 1 (best) BASIC24.63■■□□□ 1.53
TTC3P53804 WNT11-201ENST00000322563 1930 ntAPPRIS P1 TSL 1 (best) BASIC24.63■■□□□ 1.53
TTC3P53804 MRPS7-203ENST00000579002 1638 ntTSL 2 BASIC24.63■■□□□ 1.53
TTC3P53804 ADSSL1-201ENST00000330877 1766 ntAPPRIS P1 TSL 1 (best) BASIC24.63■■□□□ 1.53
TTC3P53804 LINC01167-201ENST00000423232 604 ntTSL 3 BASIC24.62■■□□□ 1.53
TTC3P53804 SIRT3-215ENST00000532956 1235 ntTSL 2 BASIC24.62■■□□□ 1.53
TTC3P53804 SNAI3-AS1-201ENST00000563261 998 ntTSL 1 (best) BASIC24.62■■□□□ 1.53
TTC3P53804 AC008105.3-201ENST00000586376 844 ntTSL 3 BASIC24.62■■□□□ 1.53
TTC3P53804 AES-207ENST00000586839 942 ntTSL 1 (best) BASIC24.62■■□□□ 1.53
TTC3P53804 NABP2-202ENST00000341463 1411 ntAPPRIS P1 TSL 3 BASIC24.62■■□□□ 1.53
TTC3P53804 HOXD4-201ENST00000306324 1464 ntAPPRIS P1 TSL 1 (best) BASIC24.62■■□□□ 1.53
TTC3P53804 FAM47E-201ENST00000424749 1484 ntAPPRIS P3 TSL 5 BASIC24.62■■□□□ 1.53
TTC3P53804 HABP4-202ENST00000375251 2304 ntTSL 1 (best) BASIC24.62■■□□□ 1.53
TTC3P53804 HNRNPAB-201ENST00000355836 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC24.62■■□□□ 1.53
TTC3P53804 HNRNPL-201ENST00000221419 2471 ntAPPRIS P1 TSL 1 (best) BASIC24.62■■□□□ 1.53
TTC3P53804 DNAJC25-GNG10-201ENST00000374294 1448 ntAPPRIS P1 TSL 2 BASIC24.62■■□□□ 1.53
TTC3P53804 TRIM72-202ENST00000613872 1573 ntTSL 1 (best) BASIC24.62■■□□□ 1.53
TTC3P53804 GTSE1-AS1-202ENST00000623117 1518 ntBASIC24.62■■□□□ 1.53
TTC3P53804 KLF15-201ENST00000296233 2574 ntAPPRIS P1 TSL 1 (best) BASIC24.61■■□□□ 1.53
TTC3P53804 LINC01574-201ENST00000512115 560 ntTSL 2 BASIC24.61■■□□□ 1.53
TTC3P53804 OIP5-AS1-208ENST00000560706 473 ntTSL 5 BASIC24.61■■□□□ 1.53
TTC3P53804 IKBIP-202ENST00000342502 1645 ntAPPRIS ALT1 TSL 1 (best) BASIC24.61■■□□□ 1.53
TTC3P53804 AL161908.1-203ENST00000425370 506 ntTSL 2 BASIC24.61■■□□□ 1.53
TTC3P53804 SLC47A1P1-202ENST00000449666 945 ntBASIC24.61■■□□□ 1.53
TTC3P53804 HERC2P4-206ENST00000568097 1062 ntTSL 5 BASIC24.61■■□□□ 1.53
TTC3P53804 AC009086.3-201ENST00000623486 1008 ntBASIC24.61■■□□□ 1.53
TTC3P53804 LHPP-201ENST00000368839 1522 ntTSL 1 (best) BASIC24.6■■□□□ 1.53
TTC3P53804 MADCAM1-205ENST00000613880 1509 ntAPPRIS ALT2 TSL 5 BASIC24.6■■□□□ 1.53
TTC3P53804 MADCAM1-206ENST00000617201 1491 ntAPPRIS ALT2 TSL 5 BASIC24.6■■□□□ 1.53
TTC3P53804 MADCAM1-207ENST00000619333 1485 ntAPPRIS ALT2 TSL 5 BASIC24.6■■□□□ 1.53
TTC3P53804 MADCAM1-210ENST00000622462 1461 ntAPPRIS ALT2 TSL 5 BASIC24.6■■□□□ 1.53
TTC3P53804 H1FX-AS1-204ENST00000511998 917 ntTSL 5 BASIC24.6■■□□□ 1.53
TTC3P53804 AC010336.5-201ENST00000594308 317 ntTSL 3 BASIC24.6■■□□□ 1.53
TTC3P53804 RASEF-201ENST00000340717 1765 ntTSL 2 BASIC24.6■■□□□ 1.53
TTC3P53804 RCN2-202ENST00000394883 1366 ntTSL 5 BASIC24.6■■□□□ 1.53
TTC3P53804 SDF4-202ENST00000360001 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC24.6■■□□□ 1.53
TTC3P53804 STARD3NL-201ENST00000009041 1728 ntAPPRIS P1 TSL 1 (best) BASIC24.6■■□□□ 1.53
TTC3P53804 TMEM70-203ENST00000517439 617 ntTSL 2 BASIC24.59■■□□□ 1.53
TTC3P53804 AF117829.1-201ENST00000519655 1398 ntTSL 5 BASIC24.59■■□□□ 1.53
TTC3P53804 ADORA2B-201ENST00000304222 1735 ntAPPRIS P1 TSL 1 (best) BASIC24.59■■□□□ 1.53
TTC3P53804 SYNGR3-202ENST00000562045 1743 ntTSL 2 BASIC24.59■■□□□ 1.53
TTC3P53804 NIPA2-202ENST00000359727 1531 ntTSL 1 (best) BASIC24.59■■□□□ 1.53
TTC3P53804 NRL-202ENST00000396997 1517 ntAPPRIS P1 TSL 1 (best) BASIC24.59■■□□□ 1.53
TTC3P53804 PARL-206ENST00000435888 1098 ntTSL 5 BASIC24.59■■□□□ 1.53
TTC3P53804 ST3GAL4-213ENST00000530591 1459 ntAPPRIS P3 TSL 1 (best) BASIC24.58■■□□□ 1.53
TTC3P53804 GDF1-201ENST00000247005 2517 ntAPPRIS P1 TSL 1 (best) BASIC24.58■■□□□ 1.53
TTC3P53804 CERS1-204ENST00000623882 2517 ntTSL 1 (best) BASIC24.58■■□□□ 1.53
TTC3P53804 IGFBP3-201ENST00000275521 2262 ntAPPRIS P3 TSL 1 (best) BASIC24.58■■□□□ 1.53
TTC3P53804 SNCB-201ENST00000310112 1383 ntAPPRIS P1 TSL 1 (best) BASIC24.58■■□□□ 1.53
TTC3P53804 EI24-204ENST00000527235 1625 ntTSL 5 BASIC24.58■■□□□ 1.52
TTC3P53804 HAS2-AS1-201ENST00000514180 1656 ntTSL 1 (best) BASIC24.58■■□□□ 1.52
TTC3P53804 DGCR6-208ENST00000608842 1837 ntTSL 2 BASIC24.58■■□□□ 1.52
TTC3P53804 MED14OS-201ENST00000456333 900 ntAPPRIS P1 TSL 1 (best) BASIC24.57■■□□□ 1.52
TTC3P53804 AL161729.1-201ENST00000604104 1402 ntBASIC24.57■■□□□ 1.52
TTC3P53804 PFKP-201ENST00000381072 1698 ntTSL 1 (best) BASIC24.57■■□□□ 1.52
TTC3P53804 UBTD1-201ENST00000370664 1706 ntAPPRIS P1 TSL 1 (best) BASIC24.57■■□□□ 1.52
TTC3P53804 AC145676.1-201ENST00000514988 2004 ntBASIC24.57■■□□□ 1.52
TTC3P53804 IGHV3-20-201ENST00000390606 415 ntAPPRIS P1 BASIC24.57■■□□□ 1.52
TTC3P53804 LINC01678-201ENST00000411694 863 ntTSL 5 BASIC24.57■■□□□ 1.52
TTC3P53804 AL583722.4-201ENST00000555524 716 ntTSL 3 BASIC24.57■■□□□ 1.52
TTC3P53804 AL138963.3-201ENST00000610057 588 ntTSL 4 BASIC24.57■■□□□ 1.52
TTC3P53804 AC010999.2-201ENST00000621974 596 ntTSL 2 BASIC24.57■■□□□ 1.52
TTC3P53804 TIMM50-201ENST00000314349 1612 ntAPPRIS P2 TSL 1 (best) BASIC24.57■■□□□ 1.52
TTC3P53804 DNAJB11-201ENST00000265028 1688 ntAPPRIS P1 TSL 1 (best) BASIC24.57■■□□□ 1.52
TTC3P53804 STX18-205ENST00000505286 1380 ntTSL 1 (best) BASIC24.56■■□□□ 1.52
TTC3P53804 C20orf144-201ENST00000375222 571 ntAPPRIS P1 TSL 1 (best) BASIC24.56■■□□□ 1.52
TTC3P53804 HES3-201ENST00000377898 697 ntAPPRIS P1 TSL 2 BASIC24.56■■□□□ 1.52
TTC3P53804 ZNF846-212ENST00000592859 1206 ntTSL 2 BASIC24.56■■□□□ 1.52
TTC3P53804 SLC39A3-203ENST00000545664 1219 ntTSL 2 BASIC24.56■■□□□ 1.52
TTC3P53804 SP2-202ENST00000613139 908 ntTSL 5 BASIC24.56■■□□□ 1.52
TTC3P53804 SLC22A18-201ENST00000312221 1628 ntAPPRIS P1 TSL 1 (best) BASIC24.55■■□□□ 1.52
TTC3P53804 PLPP1-202ENST00000307259 1597 ntAPPRIS ALT1 TSL 1 (best) BASIC24.55■■□□□ 1.52
TTC3P53804 ABHD16B-201ENST00000369916 1491 ntAPPRIS P1 BASIC24.55■■□□□ 1.52
TTC3P53804 IDH2-202ENST00000540499 1453 ntTSL 2 BASIC24.55■■□□□ 1.52
TTC3P53804 CTBP2-211ENST00000494626 2014 ntAPPRIS P1 TSL 1 (best) BASIC24.55■■□□□ 1.52
TTC3P53804 SCTR-201ENST00000019103 1865 ntAPPRIS P1 TSL 1 (best) BASIC24.55■■□□□ 1.52
TTC3P53804 ST7L-221ENST00000490067 1780 ntTSL 1 (best) BASIC24.55■■□□□ 1.52
TTC3P53804 OTUD5-202ENST00000376488 2692 ntAPPRIS ALT1 TSL 1 (best) BASIC24.55■■□□□ 1.52
TTC3P53804 HSPBP1-206ENST00000587922 1449 ntAPPRIS P1 TSL 1 (best) BASIC24.55■■□□□ 1.52
TTC3P53804 NR2F1-AS1-210ENST00000606739 1431 ntTSL 2 BASIC24.55■■□□□ 1.52
TTC3P53804 CBWD1-203ENST00000377400 1792 ntAPPRIS P1 TSL 1 (best) BASIC24.54■■□□□ 1.52
TTC3P53804 FAM124A-201ENST00000280057 2104 ntTSL 2 BASIC24.54■■□□□ 1.52
TTC3P53804 ZNHIT2-201ENST00000310597 1306 ntAPPRIS P1 BASIC24.54■■□□□ 1.52
TTC3P53804 CDIPT-207ENST00000566113 1671 ntTSL 2 BASIC24.54■■□□□ 1.52
TTC3P53804 TUNAR-203ENST00000554321 767 ntAPPRIS P1 TSL 4 BASIC24.54■■□□□ 1.52
TTC3P53804 EZH2-206ENST00000478654 2522 ntTSL 5 BASIC24.54■■□□□ 1.52
Retrieved 100 of 98,524 protein–RNA pairs in 23.7 ms