Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 ACSF2-207ENST00000504392 1881 ntTSL 2 BASIC18.21■□□□□ 0.51
HMGB3O15347 GPR157-201ENST00000377411 5265 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
HMGB3O15347 AL162393.1-201ENST00000437852 946 ntBASIC18.21■□□□□ 0.51
HMGB3O15347 CHST11-203ENST00000547956 936 ntTSL 2 BASIC18.21■□□□□ 0.51
HMGB3O15347 FKBP1A-210ENST00000614856 562 ntTSL 2 BASIC18.21■□□□□ 0.51
HMGB3O15347 CCR10-201ENST00000332438 1773 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
HMGB3O15347 PQLC3-204ENST00000441908 1784 ntTSL 2 BASIC18.21■□□□□ 0.51
HMGB3O15347 HMGXB3-206ENST00000613459 5567 ntAPPRIS ALT2 TSL 5 BASIC18.21■□□□□ 0.51
HMGB3O15347 CIDEB-201ENST00000258807 2294 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
HMGB3O15347 AC073188.6-202ENST00000616616 2281 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
HMGB3O15347 PDZRN4-202ENST00000402685 3347 ntAPPRIS P1 TSL 2 BASIC18.21■□□□□ 0.51
HMGB3O15347 NKX3-2-201ENST00000382438 2801 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
HMGB3O15347 BOP1-205ENST00000569669 2303 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
HMGB3O15347 FUT11-201ENST00000372841 2056 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
HMGB3O15347 MGAT5B-209ENST00000569840 4492 ntAPPRIS ALT1 TSL 5 BASIC18.21■□□□□ 0.51
HMGB3O15347 MAP4K4-204ENST00000350198 7316 ntTSL 5 BASIC18.21■□□□□ 0.5
HMGB3O15347 MAP2K2-201ENST00000262948 1734 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
HMGB3O15347 ZNF668-205ENST00000426488 2282 ntTSL 5 BASIC18.2■□□□□ 0.5
HMGB3O15347 EPB41L4A-AS2-201ENST00000623705 1396 ntBASIC18.2■□□□□ 0.5
HMGB3O15347 CDC16-206ENST00000375310 2156 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
HMGB3O15347 INSR-201ENST00000302850 4721 ntAPPRIS P3 TSL 1 (best) BASIC18.2■□□□□ 0.5
HMGB3O15347 MYO10-205ENST00000507288 1677 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
HMGB3O15347 MIR6089-201ENST00000616698 64 ntBASIC18.2■□□□□ 0.5
HMGB3O15347 PROCA1-201ENST00000301039 1566 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
HMGB3O15347 FAM20B-201ENST00000263733 5984 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
HMGB3O15347 PHF12-205ENST00000577226 7679 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
HMGB3O15347 PRKACA-201ENST00000308677 2677 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
HMGB3O15347 KCNIP2-206ENST00000356640 1989 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
HMGB3O15347 ARL2BP-201ENST00000219204 2130 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
HMGB3O15347 PLEKHB1-201ENST00000227214 2016 ntAPPRIS ALT1 TSL 1 (best) BASIC18.19■□□□□ 0.5
HMGB3O15347 CCNYL1-202ENST00000339882 2619 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
HMGB3O15347 LGALS9B-202ENST00000423676 1713 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
HMGB3O15347 GAL3ST3-203ENST00000527878 1599 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
HMGB3O15347 MED25-210ENST00000612854 801 ntTSL 5 BASIC18.19■□□□□ 0.5
HMGB3O15347 MED25-213ENST00000620467 1293 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
HMGB3O15347 MED25-214ENST00000622402 642 ntTSL 5 BASIC18.19■□□□□ 0.5
HMGB3O15347 MAPK12-211ENST00000622558 1779 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
HMGB3O15347 FAM129C-211ENST00000600871 1822 ntAPPRIS ALT2 TSL 5 BASIC18.19■□□□□ 0.5
HMGB3O15347 ADPRHL2-201ENST00000373178 1668 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
HMGB3O15347 B3GALNT2-202ENST00000366600 2015 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
HMGB3O15347 C16orf87-201ENST00000285697 1585 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
HMGB3O15347 AMIGO1-202ENST00000369864 5088 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
HMGB3O15347 GSC-201ENST00000238558 1264 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
HMGB3O15347 NME2-202ENST00000393190 866 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
HMGB3O15347 TERT-206ENST00000508104 2486 ntTSL 5 BASIC18.18■□□□□ 0.5
HMGB3O15347 B3GNT4-201ENST00000324189 1642 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
HMGB3O15347 PFN2-210ENST00000481767 1620 ntTSL 2 BASIC18.18■□□□□ 0.5
HMGB3O15347 PFKFB3-201ENST00000317350 1999 ntAPPRIS ALT1 TSL 5 BASIC18.18■□□□□ 0.5
HMGB3O15347 NELFCD-213ENST00000602795 2305 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
HMGB3O15347 TPM4-201ENST00000300933 2666 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
HMGB3O15347 DGAT1-201ENST00000332324 1473 ntTSL 5 BASIC18.18■□□□□ 0.5
HMGB3O15347 PDLIM2-202ENST00000308354 2236 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
HMGB3O15347 CPE-201ENST00000402744 2421 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
HMGB3O15347 AKT1S1-204ENST00000391832 1911 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
HMGB3O15347 SUGCT-201ENST00000335693 1645 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
HMGB3O15347 GNB2-203ENST00000393926 1641 ntAPPRIS P1 TSL 5 BASIC18.17■□□□□ 0.5
HMGB3O15347 EFS-203ENST00000429593 2610 ntTSL 2 BASIC18.17■□□□□ 0.5
HMGB3O15347 HLA-V-202ENST00000446817 847 ntBASIC18.17■□□□□ 0.5
HMGB3O15347 COPZ2-210ENST00000621465 895 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
HMGB3O15347 DAG1-219ENST00000538711 5582 ntAPPRIS P1 TSL 5 BASIC18.17■□□□□ 0.5
HMGB3O15347 RAD21L1-202ENST00000402452 1707 ntTSL 5 BASIC18.17■□□□□ 0.5
HMGB3O15347 PRKCI-201ENST00000295797 4950 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
HMGB3O15347 HOXC9-201ENST00000303450 1516 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
HMGB3O15347 POTEF-201ENST00000361163 1586 ntTSL 5 BASIC18.17■□□□□ 0.5
HMGB3O15347 ZSWIM8-223ENST00000605216 6004 ntAPPRIS P2 TSL 1 (best) BASIC18.17■□□□□ 0.5
HMGB3O15347 HCN1-202ENST00000634658 4738 ntTSL 3 BASIC18.16■□□□□ 0.5
HMGB3O15347 IL15RA-214ENST00000525219 1850 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
HMGB3O15347 RRAD-202ENST00000420652 1476 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
HMGB3O15347 ZDHHC5-201ENST00000287169 4666 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
HMGB3O15347 EBPL-201ENST00000242827 914 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
HMGB3O15347 PPP1R35-201ENST00000292330 1031 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
HMGB3O15347 SURF1-201ENST00000371974 1093 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
HMGB3O15347 SURF1-205ENST00000615505 991 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
HMGB3O15347 AL451007.3-201ENST00000640271 588 ntAPPRIS P1 BASIC18.16■□□□□ 0.5
HMGB3O15347 ZNF503-AS2-201ENST00000425916 2026 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
HMGB3O15347 OBSL1-203ENST00000373876 5503 ntTSL 5 BASIC18.16■□□□□ 0.5
HMGB3O15347 PLCG1-202ENST00000373271 7395 ntAPPRIS ALT1 TSL 1 (best) BASIC18.15■□□□□ 0.5
HMGB3O15347 PCSK6-217ENST00000618548 4269 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
HMGB3O15347 ZNF354A-201ENST00000335815 2484 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
HMGB3O15347 EYA2-203ENST00000357410 2465 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
HMGB3O15347 PAXBP1-201ENST00000290178 2564 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
HMGB3O15347 TDRKH-205ENST00000368827 2318 ntAPPRIS P2 TSL 1 (best) BASIC18.15■□□□□ 0.5
HMGB3O15347 FAM171A2-201ENST00000293443 3160 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
HMGB3O15347 CRHR1-201ENST00000293493 2621 ntTSL 5 BASIC18.15■□□□□ 0.5
HMGB3O15347 ATP8B2-201ENST00000368487 1523 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
HMGB3O15347 SLC35D2-202ENST00000375257 889 ntTSL 2 BASIC18.15■□□□□ 0.5
HMGB3O15347 DUX4L13-201ENST00000554103 1267 ntBASIC18.15■□□□□ 0.5
HMGB3O15347 DUX4L15-201ENST00000611059 1267 ntBASIC18.15■□□□□ 0.5
HMGB3O15347 DUX4L23-201ENST00000615195 1269 ntBASIC18.15■□□□□ 0.5
HMGB3O15347 DUX4L24-201ENST00000617576 1269 ntBASIC18.15■□□□□ 0.5
HMGB3O15347 DUX4L22-201ENST00000618238 1269 ntBASIC18.15■□□□□ 0.5
HMGB3O15347 DUX4L20-201ENST00000619712 1269 ntBASIC18.15■□□□□ 0.5
HMGB3O15347 DUX4L21-201ENST00000622058 1269 ntBASIC18.15■□□□□ 0.5
HMGB3O15347 DUX4L10-201ENST00000622460 1267 ntBASIC18.15■□□□□ 0.5
HMGB3O15347 DUX4L25-201ENST00000624915 1269 ntBASIC18.15■□□□□ 0.5
HMGB3O15347 TMEM259-202ENST00000356663 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
HMGB3O15347 TSPAN17-207ENST00000508164 2457 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
HMGB3O15347 FAM117B-201ENST00000392238 5763 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
HMGB3O15347 KAT5-201ENST00000341318 2296 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
HMGB3O15347 KCTD12-201ENST00000377474 6225 ntAPPRIS P1 BASIC18.14■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 19.5 ms