Protein–RNA interactions for Protein: A6NM62

LRRC53, Leucine-rich repeat-containing protein 53, humanhuman

Predictions only

Length 1,247 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC53A6NM62 PNCK-215ENST00000447676 1585 ntTSL 2 BASIC24.49■■□□□ 1.51
LRRC53A6NM62 GPR161-203ENST00000367836 1983 ntTSL 2 BASIC24.49■■□□□ 1.51
LRRC53A6NM62 HACD1-202ENST00000361271 2237 ntAPPRIS P1 TSL 1 (best) BASIC24.49■■□□□ 1.51
LRRC53A6NM62 EFCC1-201ENST00000436022 2691 ntAPPRIS P1 TSL 5 BASIC24.48■■□□□ 1.51
LRRC53A6NM62 EVX1-201ENST00000222761 1500 ntTSL 1 (best) BASIC24.48■■□□□ 1.51
LRRC53A6NM62 MRGBP-201ENST00000370487 2781 ntAPPRIS P1 TSL 1 (best) BASIC24.48■■□□□ 1.51
LRRC53A6NM62 RASSF10-201ENST00000529419 2530 ntAPPRIS P1 BASIC24.48■■□□□ 1.51
LRRC53A6NM62 GPIHBP1-201ENST00000622500 2282 ntAPPRIS P1 TSL 1 (best) BASIC24.47■■□□□ 1.51
LRRC53A6NM62 TBC1D22A-202ENST00000355704 1886 ntTSL 1 (best) BASIC24.47■■□□□ 1.51
LRRC53A6NM62 IKZF1-207ENST00000413698 1808 ntTSL 1 (best) BASIC24.47■■□□□ 1.51
LRRC53A6NM62 ROGDI-201ENST00000322048 1735 ntAPPRIS P1 TSL 1 (best) BASIC24.47■■□□□ 1.51
LRRC53A6NM62 TTLL1-201ENST00000266254 1645 ntAPPRIS P1 TSL 1 (best) BASIC24.47■■□□□ 1.51
LRRC53A6NM62 CITED4-201ENST00000372638 1316 ntAPPRIS P1 BASIC24.47■■□□□ 1.51
LRRC53A6NM62 LBH-205ENST00000407930 756 ntTSL 2 BASIC24.47■■□□□ 1.51
LRRC53A6NM62 AC009531.1-201ENST00000442323 580 ntTSL 4 BASIC24.47■■□□□ 1.51
LRRC53A6NM62 CLIC3-203ENST00000494426 1017 ntAPPRIS P1 TSL 1 (best) BASIC24.47■■□□□ 1.51
LRRC53A6NM62 C1orf229-201ENST00000623686 2258 ntBASIC24.47■■□□□ 1.51
LRRC53A6NM62 OSCAR-201ENST00000284648 2055 ntAPPRIS ALT2 TSL 1 (best) BASIC24.47■■□□□ 1.51
LRRC53A6NM62 TCF3-203ENST00000395423 2779 ntTSL 5 BASIC24.47■■□□□ 1.51
LRRC53A6NM62 TTC34-202ENST00000637179 1775 ntAPPRIS P2 TSL 5 BASIC24.47■■□□□ 1.51
LRRC53A6NM62 AF131216.4-201ENST00000638924 1588 ntBASIC24.46■■□□□ 1.51
LRRC53A6NM62 TMEM259-201ENST00000333175 2581 ntAPPRIS P3 TSL 1 (best) BASIC24.46■■□□□ 1.51
LRRC53A6NM62 TNFRSF12A-201ENST00000326577 1033 ntAPPRIS P1 TSL 1 (best) BASIC24.46■■□□□ 1.51
LRRC53A6NM62 BEX3-202ENST00000372634 753 ntTSL 2 BASIC24.46■■□□□ 1.51
LRRC53A6NM62 SNX5-219ENST00000606602 885 ntTSL 1 (best) BASIC24.46■■□□□ 1.51
LRRC53A6NM62 KLF16-204ENST00000617223 1133 ntAPPRIS P1 TSL 1 (best) BASIC24.46■■□□□ 1.51
LRRC53A6NM62 IQCJ-SCHIP1-202ENST00000460298 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC24.46■■□□□ 1.51
LRRC53A6NM62 C7orf26-202ENST00000359073 1762 ntTSL 1 (best) BASIC24.46■■□□□ 1.51
LRRC53A6NM62 ASRGL1-202ENST00000415229 2270 ntAPPRIS P1 TSL 1 (best) BASIC24.46■■□□□ 1.51
LRRC53A6NM62 SPEF1-201ENST00000379756 1580 ntAPPRIS P1 TSL 1 (best) BASIC24.46■■□□□ 1.51
LRRC53A6NM62 AC145124.1-201ENST00000528514 1361 ntTSL 2 BASIC24.45■■□□□ 1.5
LRRC53A6NM62 H2AFY-204ENST00000423969 924 ntTSL 2 BASIC24.45■■□□□ 1.5
LRRC53A6NM62 SSX2IP-209ENST00000603677 1149 ntTSL 1 (best) BASIC24.45■■□□□ 1.5
LRRC53A6NM62 C16orf95-206ENST00000618367 974 ntAPPRIS ALT2 TSL 2 BASIC24.45■■□□□ 1.5
LRRC53A6NM62 IKBIP-202ENST00000342502 1645 ntAPPRIS ALT1 TSL 1 (best) BASIC24.45■■□□□ 1.5
LRRC53A6NM62 CRTAC1-202ENST00000370591 2348 ntAPPRIS P2 TSL 5 BASIC24.45■■□□□ 1.5
LRRC53A6NM62 FAM136A-201ENST00000037869 1810 ntAPPRIS P1 TSL 1 (best) BASIC24.45■■□□□ 1.5
LRRC53A6NM62 SIX3-201ENST00000260653 2523 ntAPPRIS P1 TSL 1 (best) BASIC24.44■■□□□ 1.5
LRRC53A6NM62 AC233723.2-201ENST00000623798 2106 ntBASIC24.44■■□□□ 1.5
LRRC53A6NM62 KLHL36-201ENST00000258157 1974 ntTSL 1 (best) BASIC24.44■■□□□ 1.5
LRRC53A6NM62 NEK6-214ENST00000545174 2573 ntAPPRIS P1 TSL 1 (best) BASIC24.44■■□□□ 1.5
LRRC53A6NM62 VSTM2A-202ENST00000402613 1076 ntTSL 2 BASIC24.44■■□□□ 1.5
LRRC53A6NM62 MIR4281-201ENST00000580852 62 ntBASIC24.44■■□□□ 1.5
LRRC53A6NM62 AC010980.1-201ENST00000587192 1142 ntBASIC24.44■■□□□ 1.5
LRRC53A6NM62 B3GNT6-202ENST00000622824 2503 ntAPPRIS P1 TSL 1 (best) BASIC24.44■■□□□ 1.5
LRRC53A6NM62 ASPSCR1-201ENST00000306729 2123 ntAPPRIS ALT2 TSL 2 BASIC24.44■■□□□ 1.5
LRRC53A6NM62 RGS6-209ENST00000553525 2005 ntAPPRIS ALT1 TSL 2 BASIC24.44■■□□□ 1.5
LRRC53A6NM62 NIPSNAP1-201ENST00000216121 2237 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
LRRC53A6NM62 FPGS-204ENST00000393706 2230 ntTSL 2 BASIC24.43■■□□□ 1.5
LRRC53A6NM62 PRODH-203ENST00000357068 2462 ntAPPRIS P3 TSL 1 (best) BASIC24.43■■□□□ 1.5
LRRC53A6NM62 PHACTR2-208ENST00000440869 2569 ntAPPRIS ALT2 TSL 2 BASIC24.43■■□□□ 1.5
LRRC53A6NM62 STARD3NL-201ENST00000009041 1728 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
LRRC53A6NM62 SLCO3A1-201ENST00000318445 5115 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
LRRC53A6NM62 PFKP-201ENST00000381072 1698 ntTSL 1 (best) BASIC24.43■■□□□ 1.5
LRRC53A6NM62 GJD4-201ENST00000321660 1580 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
LRRC53A6NM62 PTOV1-220ENST00000601675 1587 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
LRRC53A6NM62 SRPK3-203ENST00000370104 1753 ntAPPRIS ALT2 TSL 1 (best) BASIC24.42■■□□□ 1.5
LRRC53A6NM62 IMPDH1-210ENST00000480861 1765 ntAPPRIS P2 TSL 2 BASIC24.42■■□□□ 1.5
LRRC53A6NM62 AL117328.2-201ENST00000624617 1940 ntBASIC24.42■■□□□ 1.5
LRRC53A6NM62 KRT18P24-201ENST00000344739 1156 ntBASIC24.42■■□□□ 1.5
LRRC53A6NM62 CDCA5-202ENST00000404147 1012 ntTSL 2 BASIC24.42■■□□□ 1.5
LRRC53A6NM62 AC092807.3-205ENST00000467666 531 ntTSL 3 BASIC24.42■■□□□ 1.5
LRRC53A6NM62 SNHG12-212ENST00000531126 719 ntTSL 1 (best) BASIC24.42■■□□□ 1.5
LRRC53A6NM62 EPHA10-211ENST00000540011 720 ntTSL 5 BASIC24.42■■□□□ 1.5
LRRC53A6NM62 HAGHL-205ENST00000561546 1041 ntTSL 2 BASIC24.42■■□□□ 1.5
LRRC53A6NM62 THA1P-201ENST00000590384 1145 ntBASIC24.42■■□□□ 1.5
LRRC53A6NM62 AC074183.2-201ENST00000623112 922 ntBASIC24.42■■□□□ 1.5
LRRC53A6NM62 LRIG1-202ENST00000383703 5283 ntTSL 1 (best) BASIC24.42■■□□□ 1.5
LRRC53A6NM62 IRF3-201ENST00000309877 1691 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
LRRC53A6NM62 CCDC9-201ENST00000221922 2093 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
LRRC53A6NM62 LHPP-201ENST00000368839 1522 ntTSL 1 (best) BASIC24.41■■□□□ 1.5
LRRC53A6NM62 RNF4-207ENST00000506706 2098 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
LRRC53A6NM62 SMAD1-201ENST00000302085 1966 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
LRRC53A6NM62 P2RX4-211ENST00000543171 1777 ntTSL 5 BASIC24.41■■□□□ 1.5
LRRC53A6NM62 MAPK12-211ENST00000622558 1779 ntTSL 1 (best) BASIC24.41■■□□□ 1.5
LRRC53A6NM62 SHMT1-201ENST00000316694 2464 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
LRRC53A6NM62 HAUS3-202ENST00000443786 2430 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
LRRC53A6NM62 ANXA8-204ENST00000583911 1874 ntTSL 2 BASIC24.41■■□□□ 1.5
LRRC53A6NM62 PXK-202ENST00000356151 2037 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
LRRC53A6NM62 HADH-209ENST00000603302 2032 ntTSL 1 (best) BASIC24.4■■□□□ 1.5
LRRC53A6NM62 PDIA6-207ENST00000540494 2509 ntAPPRIS ALT1 TSL 2 BASIC24.4■■□□□ 1.5
LRRC53A6NM62 ZKSCAN7-206ENST00000431636 1692 ntTSL 1 (best) BASIC24.4■■□□□ 1.5
LRRC53A6NM62 METTL9-202ENST00000396014 1817 ntAPPRIS ALT1 TSL 1 (best) BASIC24.4■■□□□ 1.5
LRRC53A6NM62 AUH-201ENST00000303617 1490 ntTSL 1 (best) BASIC24.4■■□□□ 1.5
LRRC53A6NM62 ITM2C-202ENST00000326427 2078 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
LRRC53A6NM62 TSPY13P-201ENST00000338964 914 ntBASIC24.4■■□□□ 1.5
LRRC53A6NM62 CNN3-201ENST00000370206 2165 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
LRRC53A6NM62 PPP1R12C-201ENST00000263433 2924 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
LRRC53A6NM62 PHF11-202ENST00000378319 1359 ntAPPRIS P3 TSL 1 (best) BASIC24.4■■□□□ 1.5
LRRC53A6NM62 OLIG1-201ENST00000382348 2277 ntAPPRIS P1 BASIC24.4■■□□□ 1.5
LRRC53A6NM62 TSSK1B-201ENST00000390666 2478 ntAPPRIS P1 BASIC24.39■■□□□ 1.5
LRRC53A6NM62 DENND1A-201ENST00000373618 3003 ntTSL 1 (best) BASIC24.39■■□□□ 1.5
LRRC53A6NM62 SLC25A42-201ENST00000318596 3120 ntAPPRIS P1 TSL 1 (best) BASIC24.39■■□□□ 1.5
LRRC53A6NM62 PRELID1-201ENST00000303204 1261 ntAPPRIS P1 TSL 1 (best) BASIC24.39■■□□□ 1.49
LRRC53A6NM62 GADD45A-205ENST00000617962 1142 ntTSL 1 (best) BASIC24.39■■□□□ 1.49
LRRC53A6NM62 RCN2-201ENST00000320963 1750 ntTSL 5 BASIC24.39■■□□□ 1.49
LRRC53A6NM62 IKBKG-211ENST00000615874 1460 ntTSL 5 BASIC24.38■■□□□ 1.49
LRRC53A6NM62 IKBKG-215ENST00000619941 1463 ntTSL 5 BASIC24.38■■□□□ 1.49
LRRC53A6NM62 ACSF2-207ENST00000504392 1881 ntTSL 2 BASIC24.38■■□□□ 1.49
LRRC53A6NM62 FAR2P4-203ENST00000560285 1739 ntTSL 2 BASIC24.38■■□□□ 1.49
Retrieved 100 of 98,524 protein–RNA pairs in 33.7 ms