Protein–RNA interactions for Protein: O60508

CDC40, Pre-mRNA-processing factor 17, humanhuman

Known RBP eCLIP

Length 579 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDC40O60508 EPB41L5-202ENST00000331393 1777 ntAPPRIS P1 TSL 2 BASIC7.42□□□□□ -1.228e-7■■□□□ 14.2
CDC40O60508 JAG1-202ENST00000423891 3758 ntTSL 26.81□□□□□ -1.328e-7■■□□□ 14.2
CDC40O60508 JAG1-209ENST00000622545 507 ntTSL 56.52□□□□□ -1.378e-7■■□□□ 14.2
CDC40O60508 G6PC-201ENST00000253801 3096 ntAPPRIS P1 TSL 1 (best) BASIC6.2□□□□□ -1.428e-7■■□□□ 14.2
CDC40O60508 RAN-203ENST00000448750 2455 ntTSL 26.17□□□□□ -1.428e-7■■□□□ 14.2
CDC40O60508 RAN-206ENST00000535090 657 ntTSL 54.23□□□□□ -1.738e-7■■□□□ 14.2
CDC40O60508 PLXNB1-207ENST00000464294 1025 ntTSL 215.4■□□□□ 0.062e-7■■□□□ 14.2
CDC40O60508 TARDBP-224ENST00000621573 992 ntTSL 37.38□□□□□ -1.238e-6■■□□□ 14.2
CDC40O60508 SLC5A9-204ENST00000441260 1046 ntTSL 214.79□□□□□ -0.043e-9■■□□□ 14.2
CDC40O60508 SLC5A9-202ENST00000425816 1950 ntTSL 1 (best)14.13□□□□□ -0.153e-9■■□□□ 14.2
CDC40O60508 SLC5A9-210ENST00000533824 2219 ntAPPRIS ALT2 TSL 1 (best) BASIC12.23□□□□□ -0.453e-9■■□□□ 14.2
CDC40O60508 SLC5A9-203ENST00000438567 3195 ntAPPRIS P3 TSL 1 (best) BASIC11.44□□□□□ -0.583e-9■■□□□ 14.2
CDC40O60508 SLC5A9-206ENST00000493837 3769 ntTSL 29.42□□□□□ -0.93e-9■■□□□ 14.2
CDC40O60508 SLC5A9-201ENST00000236495 3272 ntAPPRIS ALT2 TSL 1 (best) BASIC9.02□□□□□ -0.963e-9■■□□□ 14.2
CDC40O60508 FLNA-207ENST00000422373 8486 ntAPPRIS P3 TSL 5 BASIC14.13□□□□□ -0.154e-7■■□□□ 14.2
CDC40O60508 FLNA-206ENST00000420627 8225 ntTSL 513.1□□□□□ -0.314e-7■■□□□ 14.2
CDC40O60508 FLNA-203ENST00000369850 8382 ntAPPRIS ALT2 TSL 1 (best) BASIC12.91□□□□□ -0.344e-7■■□□□ 14.2
CDC40O60508 FLNA-204ENST00000369856 8241 ntAPPRIS ALT2 TSL 1 (best) BASIC12.55□□□□□ -0.44e-7■■□□□ 14.2
CDC40O60508 FLNA-219ENST00000610817 7595 ntTSL 5 BASIC12.21□□□□□ -0.454e-7■■□□□ 14.2
CDC40O60508 FLNA-202ENST00000360319 8281 ntAPPRIS P3 TSL 1 (best) BASIC12.19□□□□□ -0.464e-7■■□□□ 14.2
CDC40O60508 CSNK1E-205ENST00000405675 2127 ntTSL 5 BASIC26.31■■□□□ 1.84e-7■■□□□ 14.1
CDC40O60508 ARFGAP1-214ENST00000520485 1548 ntTSL 220.95■□□□□ 0.944e-7■■□□□ 14.1
CDC40O60508 CLN6-201ENST00000249806 2243 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.744e-7■■□□□ 14.1
CDC40O60508 CLN6-224ENST00000638076 2323 ntTSL 1 (best)19.53■□□□□ 0.724e-7■■□□□ 14.1
CDC40O60508 ARFGAP1-211ENST00000519531 1490 ntTSL 316.43■□□□□ 0.224e-7■■□□□ 14.1
CDC40O60508 AC107871.1-203ENST00000637054 3238 ntTSL 515.65■□□□□ 0.14e-7■■□□□ 14.1
CDC40O60508 ARFGAP1-220ENST00000547204 1327 ntTSL 2 BASIC15.35■□□□□ 0.054e-7■■□□□ 14.1
CDC40O60508 AC107871.1-201ENST00000637888 2941 ntTSL 515.18■□□□□ 0.024e-7■■□□□ 14.1
CDC40O60508 ARFGAP1-201ENST00000353546 2776 ntAPPRIS P4 TSL 1 (best) BASIC15.06■□□□□ 04e-7■■□□□ 14.1
CDC40O60508 AC107871.1-202ENST00000562767 3389 ntAPPRIS P1 TSL 3 BASIC15.04■□□□□ -04e-7■■□□□ 14.1
CDC40O60508 ARFGAP1-215ENST00000522403 995 ntTSL 514.78□□□□□ -0.044e-7■■□□□ 14.1
CDC40O60508 ARFGAP1-210ENST00000519273 3176 ntTSL 2 BASIC14.53□□□□□ -0.084e-7■■□□□ 14.1
CDC40O60508 ARFGAP1-221ENST00000549047 1040 ntTSL 514.05□□□□□ -0.164e-7■■□□□ 14.1
CDC40O60508 SLC38A3-209ENST00000621714 992 ntTSL 513.85□□□□□ -0.194e-7■■□□□ 14.1
CDC40O60508 ARFGAP1-203ENST00000370283 3281 ntAPPRIS ALT2 TSL 1 (best) BASIC13.46□□□□□ -0.254e-7■■□□□ 14.1
CDC40O60508 ARFGAP1-218ENST00000523460 572 ntTSL 413.1□□□□□ -0.314e-7■■□□□ 14.1
CDC40O60508 ARFGAP1-202ENST00000370275 3467 ntAPPRIS ALT2 TSL 1 (best) BASIC13.09□□□□□ -0.314e-7■■□□□ 14.1
CDC40O60508 SLC38A3-207ENST00000620404 566 ntTSL 312.86□□□□□ -0.354e-7■■□□□ 14.1
CDC40O60508 HDLBP-214ENST00000427183 6238 ntTSL 2 BASIC12.8□□□□□ -0.363e-9■■□□□ 14.1
CDC40O60508 ARFGAP1-212ENST00000519604 3191 ntTSL 2 BASIC12.73□□□□□ -0.374e-7■■□□□ 14.1
CDC40O60508 HDLBP-204ENST00000391976 4489 ntAPPRIS P1 TSL 5 BASIC12.46□□□□□ -0.413e-9■■□□□ 14.1
CDC40O60508 ARFGAP1-206ENST00000518601 905 ntTSL 512.1□□□□□ -0.474e-7■■□□□ 14.1
CDC40O60508 SLC38A3-205ENST00000610458 584 ntTSL 311.92□□□□□ -0.54e-7■■□□□ 14.1
CDC40O60508 HDLBP-203ENST00000391975 6372 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.513e-9■■□□□ 14.1
CDC40O60508 AC107871.1-204ENST00000638026 2895 ntTSL 1 (best)10.48□□□□□ -0.734e-7■■□□□ 14.1
CDC40O60508 CLN6-217ENST00000636964 3335 ntTSL 210.41□□□□□ -0.744e-7■■□□□ 14.1
CDC40O60508 SLC38A3-206ENST00000614032 2978 ntAPPRIS P1 TSL 1 (best) BASIC10.34□□□□□ -0.754e-7■■□□□ 14.1
CDC40O60508 HDLBP-202ENST00000373292 3297 ntTSL 510.15□□□□□ -0.783e-9■■□□□ 14.1
CDC40O60508 HDLBP-201ENST00000310931 4571 ntAPPRIS P1 TSL 1 (best) BASIC9.61□□□□□ -0.873e-9■■□□□ 14.1
CDC40O60508 SLC38A3-204ENST00000445096 880 ntTSL 58.78□□□□□ -14e-7■■□□□ 14.1
CDC40O60508 SRRM2-221ENST00000574866 638 ntTSL 316.4■□□□□ 0.226e-30■■□□□ 14.1
CDC40O60508 EEF1D-216ENST00000526710 996 ntTSL 218.96■□□□□ 0.637e-10■■□□□ 14.1
CDC40O60508 EEF1D-228ENST00000529832 600 ntTSL 417.26■□□□□ 0.357e-10■■□□□ 14.1
CDC40O60508 EEF1D-209ENST00000524900 343 ntTSL 516.2■□□□□ 0.187e-10■■□□□ 14.1
CDC40O60508 EEF1D-231ENST00000530306 583 ntTSL 214.39□□□□□ -0.117e-10■■□□□ 14.1
CDC40O60508 EEF1D-245ENST00000532596 761 ntTSL 413.81□□□□□ -0.27e-10■■□□□ 14.1
CDC40O60508 EEF1D-211ENST00000525261 559 ntTSL 213.81□□□□□ -0.27e-10■■□□□ 14.1
CDC40O60508 EEF1D-233ENST00000530545 616 ntTSL 412.61□□□□□ -0.397e-10■■□□□ 14.1
CDC40O60508 EEF1D-220ENST00000528303 558 ntTSL 412.02□□□□□ -0.497e-10■■□□□ 14.1
CDC40O60508 EEF1D-254ENST00000534475 538 ntTSL 411.58□□□□□ -0.567e-10■■□□□ 14.1
CDC40O60508 EEF1D-242ENST00000531953 506 ntTSL 411.48□□□□□ -0.577e-10■■□□□ 14.1
CDC40O60508 EEF1D-213ENST00000526133 367 ntTSL 29.16□□□□□ -0.947e-10■■□□□ 14.1
CDC40O60508 EEF1D-255ENST00000534804 555 ntTSL 47.8□□□□□ -1.167e-10■■□□□ 14.1
CDC40O60508 CSNK1E-204ENST00000403904 1580 ntAPPRIS P1 TSL 5 BASIC30.27■■■□□ 2.442e-7■■□□□ 14
CDC40O60508 CSNK1E-206ENST00000413574 1631 ntTSL 5 BASIC27.81■■■□□ 2.042e-7■■□□□ 14
CDC40O60508 CSNK1E-203ENST00000396832 2791 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.062e-7■■□□□ 14
CDC40O60508 Z98749.3-201ENST00000400206 1770 ntAPPRIS P1 TSL 2 BASIC14.67□□□□□ -0.062e-7■■□□□ 14
CDC40O60508 CSNK1E-208ENST00000431611 814 ntTSL 514.12□□□□□ -0.152e-7■■□□□ 14
CDC40O60508 CSNK1E-209ENST00000431632 763 ntTSL 213.1□□□□□ -0.312e-7■■□□□ 14
CDC40O60508 CSNK1E-201ENST00000359867 2642 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.42e-7■■□□□ 14
CDC40O60508 EPHA2-204ENST00000480202 795 ntTSL 516.52■□□□□ 0.244e-7■■□□□ 14
CDC40O60508 EPHA2-201ENST00000358432 3964 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.264e-7■■□□□ 14
CDC40O60508 NOTUM-202ENST00000425009 996 ntTSL 322.4■■□□□ 1.186e-8■■□□□ 14
CDC40O60508 DYNC1H1-201ENST00000360184 14333 ntAPPRIS P1 TSL 1 (best) BASIC10.68□□□□□ -0.71e-6■■□□□ 14
CDC40O60508 FLNA-201ENST00000344736 7932 ntAPPRIS ALT2 TSL 5 BASIC13.33□□□□□ -0.285e-7■■□□□ 14
CDC40O60508 AHNAK-208ENST00000533365 584 ntAPPRIS ALT2 TSL 517.57■□□□□ 0.44e-7■■□□□ 13.9
CDC40O60508 AHNAK-201ENST00000257247 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC13.9□□□□□ -0.184e-7■■□□□ 13.9
CDC40O60508 AHNAK-205ENST00000530124 701 ntAPPRIS ALT2 TSL 3 BASIC13.19□□□□□ -0.34e-7■■□□□ 13.9
CDC40O60508 AHNAK-202ENST00000378024 18787 ntAPPRIS P3 TSL 2 BASIC4.95□□□□□ -1.624e-7■■□□□ 13.9
CDC40O60508 TRIM25-207ENST00000573108 952 ntTSL 311.26□□□□□ -0.616e-9■■□□□ 13.9
CDC40O60508 SEMA4G-211ENST00000521006 4656 ntTSL 1 (best)12.59□□□□□ -0.395e-6■■□□□ 13.8
CDC40O60508 SEMA4G-205ENST00000517724 2675 ntTSL 1 (best) BASIC9.67□□□□□ -0.865e-6■■□□□ 13.8
CDC40O60508 SEMA4G-202ENST00000370250 3596 ntAPPRIS ALT1 TSL 5 BASIC9.53□□□□□ -0.885e-6■■□□□ 13.8
CDC40O60508 SEMA4G-201ENST00000210633 4094 ntAPPRIS P2 TSL 1 (best) BASIC9.45□□□□□ -0.95e-6■■□□□ 13.8
CDC40O60508 ASPSCR1-213ENST00000582355 1246 ntTSL 521.77■■□□□ 1.083e-10■■□□□ 13.8
CDC40O60508 ASPSCR1-219ENST00000584454 1919 ntTSL 1 (best)20.71■□□□□ 0.913e-10■■□□□ 13.8
CDC40O60508 ASPSCR1-208ENST00000580534 1776 ntTSL 2 BASIC20.26■□□□□ 0.833e-10■■□□□ 13.8
CDC40O60508 ASPSCR1-201ENST00000306729 2123 ntAPPRIS ALT2 TSL 2 BASIC20.18■□□□□ 0.823e-10■■□□□ 13.8
CDC40O60508 ASPSCR1-202ENST00000306739 1843 ntAPPRIS P3 TSL 1 (best) BASIC20.06■□□□□ 0.83e-10■■□□□ 13.8
CDC40O60508 ATXN1-210ENST00000498374 1648 ntTSL 1 (best)6.68□□□□□ -1.342e-6■■□□□ 13.8
CDC40O60508 ATXN1-205ENST00000479680 568 ntTSL 46.65□□□□□ -1.342e-6■■□□□ 13.8
CDC40O60508 ATXN1-208ENST00000492857 647 ntTSL 44.3□□□□□ -1.722e-6■■□□□ 13.8
CDC40O60508 ATXN1-203ENST00000467008 3362 ntTSL 1 (best)2.74□□□□□ -1.972e-6■■□□□ 13.8
CDC40O60508 SHANK2-204ENST00000409530 2123 ntTSL 5 BASIC14.33□□□□□ -0.111e-6■■□□□ 13.8
CDC40O60508 SHANK2-210ENST00000449116 939 ntTSL 1 (best) BASIC13.3□□□□□ -0.281e-6■■□□□ 13.8
CDC40O60508 SHANK2-209ENST00000445654 522 ntTSL 313.12□□□□□ -0.311e-6■■□□□ 13.8
CDC40O60508 SHANK2-202ENST00000357171 1373 ntTSL 5 BASIC12.41□□□□□ -0.421e-6■■□□□ 13.8
CDC40O60508 SHANK2-203ENST00000409161 9208 ntTSL 1 (best) BASIC12.34□□□□□ -0.431e-6■■□□□ 13.8
CDC40O60508 SHANK2-211ENST00000449833 8850 ntTSL 5 BASIC12.31□□□□□ -0.441e-6■■□□□ 13.8
CDC40O60508 SHANK2-201ENST00000338508 7271 ntTSL 5 BASIC11.92□□□□□ -0.51e-6■■□□□ 13.8
Retrieved 100 of 5,364 protein–RNA pairs in 98.4 ms