RNA–Protein interactions for RNA: ENST00000359867.7

CSNK1E-201, Transcript of casein kinase 1 epsilon, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSNK1E, Length 2,642 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSNK1E-201ENST00000359867 NISCHQ9Y2I1 1504 aa31.53■■■□□ 2.64
CSNK1E-201ENST00000359867 CCDC180Q9P1Z9 1646 aa27.65■■■□□ 2.02
CSNK1E-201ENST00000359867 ABCC9O60706 1549 aa26.63■■□□□ 1.85
CSNK1E-201ENST00000359867 ZCCHC6Q5VYS8 1495 aaKnown RBP26.4■■□□□ 1.82
CSNK1E-201ENST00000359867 DCAF8L2P0C7V8 631 aa26.28■■□□□ 1.8
CSNK1E-201ENST00000359867 DCAF1Q9Y4B6 1507 aa26■■□□□ 1.75
CSNK1E-201ENST00000359867 NACADO15069 1562 aa25.85■■□□□ 1.73
CSNK1E-201ENST00000359867 MYO15BQ96JP2 1530 aa25.83■■□□□ 1.73
CSNK1E-201ENST00000359867 RB1CC1Q8TDY2 1594 aa25.75■■□□□ 1.71
CSNK1E-201ENST00000359867 SHROOM4Q9ULL8 1493 aa25.55■■□□□ 1.68
CSNK1E-201ENST00000359867 SCRIBQ14160 1630 aa25.47■■□□□ 1.67
CSNK1E-201ENST00000359867 UNC13AQ9UPW8 1703 aa25.27■■□□□ 1.64
CSNK1E-201ENST00000359867 PABPN1Q86U42 306 aaKnown RBP eCLIP25.04■■□□□ 1.64e-7■■■□□ 17.8
CSNK1E-201ENST00000359867 BICRAQ9NZM4 1560 aa25.02■■□□□ 1.6
CSNK1E-201ENST00000359867 CECR2Q9BXF3 1484 aa24.59■■□□□ 1.53
CSNK1E-201ENST00000359867 MROH2BQ7Z745 1585 aa24.38■■□□□ 1.49
CSNK1E-201ENST00000359867 BAZ1AQ9NRL2 1556 aaPredicted RBP24.37■■□□□ 1.49
CSNK1E-201ENST00000359867 SUPT5HO00267 1087 aaKnown RBP24.34■■□□□ 1.49
CSNK1E-201ENST00000359867 SMARCA4P51532 1647 aa24.34■■□□□ 1.49
CSNK1E-201ENST00000359867 RSF1Q96T23 1441 aaPredicted RBP24.31■■□□□ 1.48
CSNK1E-201ENST00000359867 EIF4G1Q04637 1599 aaKnown RBP24.3■■□□□ 1.48
CSNK1E-201ENST00000359867 WIZO95785 1651 aa24.17■■□□□ 1.46
CSNK1E-201ENST00000359867 CC2D2AQ9P2K1 1620 aa24.06■■□□□ 1.44
CSNK1E-201ENST00000359867 ATAD2BQ9ULI0 1458 aa24.04■■□□□ 1.44
CSNK1E-201ENST00000359867 PEG3Q9GZU2 1588 aa24.01■■□□□ 1.43
CSNK1E-201ENST00000359867 SMARCA2P51531 1590 aa23.98■■□□□ 1.43
CSNK1E-201ENST00000359867 BAZ1BQ9UIG0 1483 aaKnown RBP23.89■■□□□ 1.41
CSNK1E-201ENST00000359867 DNAJC5BQ9UF47 199 aa23.88■■□□□ 1.41
CSNK1E-201ENST00000359867 NCAPD3P42695 1498 aa23.87■■□□□ 1.41
CSNK1E-201ENST00000359867 TOP2AP11388 1531 aaKnown RBP23.86■■□□□ 1.41
CSNK1E-201ENST00000359867 HMGXB3Q12766 1538 aa23.8■■□□□ 1.4
CSNK1E-201ENST00000359867 CCDC88BA6NC98 1476 aa23.63■■□□□ 1.37
CSNK1E-201ENST00000359867 CHIC1Q5VXU3 224 aa23.34■■□□□ 1.33
CSNK1E-201ENST00000359867 NESP48681 1621 aa23.25■■□□□ 1.31
CSNK1E-201ENST00000359867 CADPSQ9ULU8 1353 aa23.25■■□□□ 1.31
CSNK1E-201ENST00000359867 CFTRP13569 1480 aa23.24■■□□□ 1.31
CSNK1E-201ENST00000359867 LAMC3Q9Y6N6 1575 aa23.14■■□□□ 1.29
CSNK1E-201ENST00000359867 PRDM2Q13029 1718 aa23.09■■□□□ 1.29
CSNK1E-201ENST00000359867 ABCC8Q09428 1581 aa23.06■■□□□ 1.28
CSNK1E-201ENST00000359867 FANCD2Q9BXW9 1451 aa23.01■■□□□ 1.27
CSNK1E-201ENST00000359867 PDS5BQ9NTI5 1447 aa22.97■■□□□ 1.27
CSNK1E-201ENST00000359867 KIF21AQ7Z4S6 1674 aa22.95■■□□□ 1.26
CSNK1E-201ENST00000359867 CEP164Q9UPV0 1460 aa22.91■■□□□ 1.26
CSNK1E-201ENST00000359867 WRNQ14191 1432 aaPredicted RBP eCLIP22.9■■□□□ 1.26
CSNK1E-201ENST00000359867 TRIM41Q8WV44 630 aa22.87■■□□□ 1.25
CSNK1E-201ENST00000359867 SYNJ1O43426 1573 aa22.85■■□□□ 1.25
CSNK1E-201ENST00000359867 ERCC6Q03468 1493 aa22.85■■□□□ 1.25
CSNK1E-201ENST00000359867 CUX1P39880 1505 aa22.81■■□□□ 1.24
CSNK1E-201ENST00000359867 URB2Q14146 1524 aaKnown RBP22.76■■□□□ 1.23
CSNK1E-201ENST00000359867 TOP2BQ02880 1626 aa22.74■■□□□ 1.23
CSNK1E-201ENST00000359867 BIVM-ERCC5R4GMW8 1640 aa22.72■■□□□ 1.23
CSNK1E-201ENST00000359867 MRC2Q9UBG0 1479 aa22.71■■□□□ 1.23
CSNK1E-201ENST00000359867 TOPBP1Q92547 1522 aa22.71■■□□□ 1.23
CSNK1E-201ENST00000359867 DNMBPQ6XZF7 1577 aa22.71■■□□□ 1.23
CSNK1E-201ENST00000359867 THOC2Q8NI27 1593 aaKnown RBP22.66■■□□□ 1.22
CSNK1E-201ENST00000359867 FGD5Q6ZNL6 1462 aa22.63■■□□□ 1.21
CSNK1E-201ENST00000359867 WDR62O43379 1518 aa22.61■■□□□ 1.21
CSNK1E-201ENST00000359867 POLA1P09884 1462 aaPredicted RBP22.58■■□□□ 1.21
CSNK1E-201ENST00000359867 RAD54L2Q9Y4B4 1467 aa22.53■■□□□ 1.2
CSNK1E-201ENST00000359867 SOGA1O94964 1423 aa22.52■■□□□ 1.19
CSNK1E-201ENST00000359867 FAM9AQ8IZU1 332 aaPredicted RBP22.51■■□□□ 1.19
CSNK1E-201ENST00000359867 RUSC2Q8N2Y8 1516 aa22.47■■□□□ 1.19
CSNK1E-201ENST00000359867 CUX2O14529 1486 aa22.47■■□□□ 1.19
CSNK1E-201ENST00000359867 LOC105371045A0A1W2PR82 267 aa22.44■■□□□ 1.18
CSNK1E-201ENST00000359867 TARBP1Q13395 1621 aaKnown RBP22.4■■□□□ 1.18
CSNK1E-201ENST00000359867 ABCA10Q8WWZ4 1543 aa22.38■■□□□ 1.17
CSNK1E-201ENST00000359867 WDR97A6NE52 1622 aa22.37■■□□□ 1.17
CSNK1E-201ENST00000359867 IFT140Q96RY7 1462 aa22.35■■□□□ 1.17
CSNK1E-201ENST00000359867 TDRD9Q8NDG6 1382 aaKnown RBP22.35■■□□□ 1.17
CSNK1E-201ENST00000359867 KIF27Q86VH2 1401 aa22.34■■□□□ 1.17
CSNK1E-201ENST00000359867 ZNF608Q9ULD9 1512 aaPredicted RBP22.32■■□□□ 1.16
CSNK1E-201ENST00000359867 AQRO60306 1485 aaKnown RBP eCLIP22.28■■□□□ 1.161e-6■■■■□ 24
CSNK1E-201ENST00000359867 EEA1Q15075 1411 aa22.28■■□□□ 1.16
CSNK1E-201ENST00000359867 EHMT2Q96KQ7 1210 aa22.27■■□□□ 1.16
CSNK1E-201ENST00000359867 CSRNP3Q8WYN3 585 aa22.26■■□□□ 1.15
CSNK1E-201ENST00000359867 ABCA5Q8WWZ7 1642 aa22.25■■□□□ 1.15
CSNK1E-201ENST00000359867 GAPVD1Q14C86 1478 aa22.24■■□□□ 1.15
CSNK1E-201ENST00000359867 EIF4G3O43432 1585 aaKnown RBP22.22■■□□□ 1.15
CSNK1E-201ENST00000359867 IGF1RP08069 1367 aa22.19■■□□□ 1.14
CSNK1E-201ENST00000359867 PBRM1Q86U86 1689 aa22.15■■□□□ 1.14
CSNK1E-201ENST00000359867 HRCP23327 699 aa22.13■■□□□ 1.13
CSNK1E-201ENST00000359867 GRIN2BQ13224 1484 aa22.11■■□□□ 1.13
CSNK1E-201ENST00000359867 ERICH3Q5RHP9 1530 aa22.11■■□□□ 1.13
CSNK1E-201ENST00000359867 PRXQ9BXM0 1461 aa22.08■■□□□ 1.13
CSNK1E-201ENST00000359867 CARMIL1Q5VZK9 1371 aa22.07■■□□□ 1.12
CSNK1E-201ENST00000359867 RAPGEF2Q9Y4G8 1499 aa22.07■■□□□ 1.12
CSNK1E-201ENST00000359867 PCGF6Q9BYE7 350 aa22.07■■□□□ 1.12
CSNK1E-201ENST00000359867 SNAPC4Q5SXM2 1469 aa22.05■■□□□ 1.12
CSNK1E-201ENST00000359867 KIF21BO75037 1637 aa22.05■■□□□ 1.12
CSNK1E-201ENST00000359867 CUL7Q14999 1698 aa22.04■■□□□ 1.12
CSNK1E-201ENST00000359867 GOLGA3Q08378 1498 aa22■■□□□ 1.11
CSNK1E-201ENST00000359867 ADAMTS12P58397 1594 aa22■■□□□ 1.11
CSNK1E-201ENST00000359867 UBTFP17480 764 aaKnown RBP21.98■■□□□ 1.11
CSNK1E-201ENST00000359867 FHAD1B1AJZ9 1412 aa21.96■■□□□ 1.11
CSNK1E-201ENST00000359867 MAGI1Q96QZ7 1491 aaPredicted RBP21.96■■□□□ 1.11
CSNK1E-201ENST00000359867 FBLN2P98095 1184 aa21.93■■□□□ 1.1
CSNK1E-201ENST00000359867 SYNJ2O15056 1496 aa21.89■■□□□ 1.09
CSNK1E-201ENST00000359867 CHMP7Q8WUX9 453 aaPredicted RBP21.89■■□□□ 1.09
CSNK1E-201ENST00000359867 GRIN2AQ12879 1464 aa21.86■■□□□ 1.09
CSNK1E-201ENST00000359867 TNIKQ9UKE5 1360 aa21.85■■□□□ 1.09
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms