RNA–Protein interactions for RNA: ENST00000449116.6

SHANK2-210, Transcript of SH3 and multiple ankyrin repeat domains 2, humanhuman

TSL 1 (best) BASIC

Gene SHANK2, Length 939 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK2-210ENST00000449116 NISCHQ9Y2I1 1504 aa34.5■■■■□ 3.11
SHANK2-210ENST00000449116 CCDC180Q9P1Z9 1646 aa30.4■■■□□ 2.46
SHANK2-210ENST00000449116 ABCC9O60706 1549 aa29.23■■■□□ 2.27
SHANK2-210ENST00000449116 ZCCHC6Q5VYS8 1495 aaKnown RBP28.87■■■□□ 2.21
SHANK2-210ENST00000449116 DCAF8L2P0C7V8 631 aa28.6■■■□□ 2.17
SHANK2-210ENST00000449116 DCAF1Q9Y4B6 1507 aa28.58■■■□□ 2.17
SHANK2-210ENST00000449116 MYO15BQ96JP2 1530 aa28.49■■■□□ 2.15
SHANK2-210ENST00000449116 NACADO15069 1562 aa28.47■■■□□ 2.15
SHANK2-210ENST00000449116 RB1CC1Q8TDY2 1594 aa28.36■■■□□ 2.13
SHANK2-210ENST00000449116 SCRIBQ14160 1630 aa27.8■■■□□ 2.04
SHANK2-210ENST00000449116 UNC13AQ9UPW8 1703 aa27.68■■■□□ 2.02
SHANK2-210ENST00000449116 SHROOM4Q9ULL8 1493 aa27.59■■■□□ 2.01
SHANK2-210ENST00000449116 BICRAQ9NZM4 1560 aa27.48■■□□□ 1.99
SHANK2-210ENST00000449116 PABPN1Q86U42 306 aaKnown RBP eCLIP27.41■■□□□ 1.98
SHANK2-210ENST00000449116 CECR2Q9BXF3 1484 aa26.81■■□□□ 1.88
SHANK2-210ENST00000449116 EIF4G1Q04637 1599 aaKnown RBP26.71■■□□□ 1.87
SHANK2-210ENST00000449116 BAZ1AQ9NRL2 1556 aaPredicted RBP26.71■■□□□ 1.87
SHANK2-210ENST00000449116 SMARCA4P51532 1647 aa26.65■■□□□ 1.86
SHANK2-210ENST00000449116 MROH2BQ7Z745 1585 aa26.59■■□□□ 1.85
SHANK2-210ENST00000449116 RSF1Q96T23 1441 aaPredicted RBP26.5■■□□□ 1.83
SHANK2-210ENST00000449116 CC2D2AQ9P2K1 1620 aa26.46■■□□□ 1.83
SHANK2-210ENST00000449116 DNAJC5BQ9UF47 199 aa26.39■■□□□ 1.82
SHANK2-210ENST00000449116 PEG3Q9GZU2 1588 aa26.38■■□□□ 1.81
SHANK2-210ENST00000449116 SMARCA2P51531 1590 aa26.37■■□□□ 1.81
SHANK2-210ENST00000449116 ATAD2BQ9ULI0 1458 aa26.36■■□□□ 1.81
SHANK2-210ENST00000449116 WIZO95785 1651 aa26.32■■□□□ 1.8
SHANK2-210ENST00000449116 NCAPD3P42695 1498 aa26.27■■□□□ 1.8
SHANK2-210ENST00000449116 SUPT5HO00267 1087 aaKnown RBP26.26■■□□□ 1.79
SHANK2-210ENST00000449116 HMGXB3Q12766 1538 aa26.19■■□□□ 1.78
SHANK2-210ENST00000449116 BAZ1BQ9UIG0 1483 aaKnown RBP26.18■■□□□ 1.78
SHANK2-210ENST00000449116 TOP2AP11388 1531 aaKnown RBP26.1■■□□□ 1.77
SHANK2-210ENST00000449116 CCDC88BA6NC98 1476 aa25.79■■□□□ 1.72
SHANK2-210ENST00000449116 CADPSQ9ULU8 1353 aa25.54■■□□□ 1.68
SHANK2-210ENST00000449116 CFTRP13569 1480 aa25.51■■□□□ 1.67
SHANK2-210ENST00000449116 LAMC3Q9Y6N6 1575 aa25.48■■□□□ 1.67
SHANK2-210ENST00000449116 NESP48681 1621 aa25.45■■□□□ 1.67
SHANK2-210ENST00000449116 PRDM2Q13029 1718 aa25.32■■□□□ 1.64
SHANK2-210ENST00000449116 PDS5BQ9NTI5 1447 aa25.3■■□□□ 1.64
SHANK2-210ENST00000449116 FANCD2Q9BXW9 1451 aa25.24■■□□□ 1.63
SHANK2-210ENST00000449116 ERCC6Q03468 1493 aa25.16■■□□□ 1.62
SHANK2-210ENST00000449116 KIF21AQ7Z4S6 1674 aa25.16■■□□□ 1.62
SHANK2-210ENST00000449116 CEP164Q9UPV0 1460 aa25.15■■□□□ 1.62
SHANK2-210ENST00000449116 ABCC8Q09428 1581 aa25.01■■□□□ 1.59
SHANK2-210ENST00000449116 MRC2Q9UBG0 1479 aa25.01■■□□□ 1.59
SHANK2-210ENST00000449116 WRNQ14191 1432 aaPredicted RBP eCLIP24.98■■□□□ 1.59
SHANK2-210ENST00000449116 THOC2Q8NI27 1593 aaKnown RBP24.95■■□□□ 1.58
SHANK2-210ENST00000449116 URB2Q14146 1524 aaKnown RBP24.95■■□□□ 1.58
SHANK2-210ENST00000449116 DNMBPQ6XZF7 1577 aa24.92■■□□□ 1.58
SHANK2-210ENST00000449116 CUX1P39880 1505 aa24.91■■□□□ 1.58
SHANK2-210ENST00000449116 WDR62O43379 1518 aa24.91■■□□□ 1.58
SHANK2-210ENST00000449116 TOPBP1Q92547 1522 aa24.9■■□□□ 1.58
SHANK2-210ENST00000449116 SYNJ1O43426 1573 aa24.88■■□□□ 1.57
SHANK2-210ENST00000449116 TOP2BQ02880 1626 aa24.85■■□□□ 1.57
SHANK2-210ENST00000449116 CHIC1Q5VXU3 224 aa24.84■■□□□ 1.57
SHANK2-210ENST00000449116 BIVM-ERCC5R4GMW8 1640 aa24.83■■□□□ 1.57
SHANK2-210ENST00000449116 TRIM41Q8WV44 630 aa24.78■■□□□ 1.56
SHANK2-210ENST00000449116 FGD5Q6ZNL6 1462 aa24.75■■□□□ 1.55
SHANK2-210ENST00000449116 POLA1P09884 1462 aaPredicted RBP24.73■■□□□ 1.55
SHANK2-210ENST00000449116 CUX2O14529 1486 aa24.69■■□□□ 1.54
SHANK2-210ENST00000449116 SOGA1O94964 1423 aa24.63■■□□□ 1.53
SHANK2-210ENST00000449116 IFT140Q96RY7 1462 aa24.62■■□□□ 1.53
SHANK2-210ENST00000449116 RAD54L2Q9Y4B4 1467 aa24.62■■□□□ 1.53
SHANK2-210ENST00000449116 TARBP1Q13395 1621 aaKnown RBP24.57■■□□□ 1.52
SHANK2-210ENST00000449116 DNAJC5Q9H3Z4 198 aa24.55■■□□□ 1.52
SHANK2-210ENST00000449116 ABCA10Q8WWZ4 1543 aa24.54■■□□□ 1.52
SHANK2-210ENST00000449116 WDR97A6NE52 1622 aa24.5■■□□□ 1.51
SHANK2-210ENST00000449116 ZNF608Q9ULD9 1512 aaPredicted RBP24.44■■□□□ 1.5
SHANK2-210ENST00000449116 TDRD9Q8NDG6 1382 aaKnown RBP24.42■■□□□ 1.5
SHANK2-210ENST00000449116 KIF27Q86VH2 1401 aa24.42■■□□□ 1.5
SHANK2-210ENST00000449116 ABCA5Q8WWZ7 1642 aa24.39■■□□□ 1.49
SHANK2-210ENST00000449116 AQRO60306 1485 aaKnown RBP eCLIP24.38■■□□□ 1.495e-7■■■■■ 27.6
SHANK2-210ENST00000449116 GAPVD1Q14C86 1478 aa24.37■■□□□ 1.49
SHANK2-210ENST00000449116 EIF4G3O43432 1585 aaKnown RBP24.37■■□□□ 1.49
SHANK2-210ENST00000449116 RUSC2Q8N2Y8 1516 aa24.35■■□□□ 1.49
SHANK2-210ENST00000449116 EEA1Q15075 1411 aa24.33■■□□□ 1.49
SHANK2-210ENST00000449116 GRIN2BQ13224 1484 aa24.28■■□□□ 1.48
SHANK2-210ENST00000449116 ERICH3Q5RHP9 1530 aa24.25■■□□□ 1.47
SHANK2-210ENST00000449116 PBRM1Q86U86 1689 aa24.25■■□□□ 1.47
SHANK2-210ENST00000449116 FAM9AQ8IZU1 332 aaPredicted RBP24.25■■□□□ 1.47
SHANK2-210ENST00000449116 IGF1RP08069 1367 aa24.24■■□□□ 1.47
SHANK2-210ENST00000449116 CSRNP3Q8WYN3 585 aa24.21■■□□□ 1.47
SHANK2-210ENST00000449116 SNAPC4Q5SXM2 1469 aa24.17■■□□□ 1.46
SHANK2-210ENST00000449116 MAGI1Q96QZ7 1491 aaPredicted RBP24.16■■□□□ 1.46
SHANK2-210ENST00000449116 CUL7Q14999 1698 aa24.14■■□□□ 1.45
SHANK2-210ENST00000449116 CARMIL1Q5VZK9 1371 aa24.12■■□□□ 1.45
SHANK2-210ENST00000449116 ADAMTS12P58397 1594 aa24.12■■□□□ 1.45
SHANK2-210ENST00000449116 FHAD1B1AJZ9 1412 aa24.1■■□□□ 1.45
SHANK2-210ENST00000449116 PRXQ9BXM0 1461 aa24.09■■□□□ 1.45
SHANK2-210ENST00000449116 SYNJ2O15056 1496 aa24.07■■□□□ 1.44
SHANK2-210ENST00000449116 RAPGEF2Q9Y4G8 1499 aa24.03■■□□□ 1.44
SHANK2-210ENST00000449116 KIF21BO75037 1637 aa24.02■■□□□ 1.44
SHANK2-210ENST00000449116 CHMP7Q8WUX9 453 aaPredicted RBP24.01■■□□□ 1.43
SHANK2-210ENST00000449116 FBLN2P98095 1184 aa23.98■■□□□ 1.43
SHANK2-210ENST00000449116 GRIN2AQ12879 1464 aa23.97■■□□□ 1.43
SHANK2-210ENST00000449116 GOLGA3Q08378 1498 aa23.94■■□□□ 1.42
SHANK2-210ENST00000449116 CHD1O14646 1710 aa23.93■■□□□ 1.42
SHANK2-210ENST00000449116 EHMT2Q96KQ7 1210 aa23.88■■□□□ 1.41
SHANK2-210ENST00000449116 NUP160Q12769 1436 aa23.84■■□□□ 1.41
SHANK2-210ENST00000449116 CEP170Q5SW79 1584 aa23.82■■□□□ 1.4
SHANK2-210ENST00000449116 UBTFP17480 764 aaKnown RBP23.82■■□□□ 1.4
Retrieved 100 of 20,778 RNA–protein pairs in 15 ms