Protein–RNA interactions for Protein: A6NJ46

NKX6-3, Homeobox protein Nkx-6.3, humanhuman

Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX6-3A6NJ46 SUSD3-202ENST00000375472 1195 ntAPPRIS P3 TSL 1 (best) BASIC19.12■□□□□ 0.65
NKX6-3A6NJ46 AC119427.1-201ENST00000633182 556 ntTSL 4 BASIC19.12■□□□□ 0.65
NKX6-3A6NJ46 DLEU2-208ENST00000621282 3068 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
NKX6-3A6NJ46 PLEKHA8-201ENST00000258679 2293 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
NKX6-3A6NJ46 C19orf12-204ENST00000392276 1912 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
NKX6-3A6NJ46 GNB1-210ENST00000615252 3048 ntTSL 5 BASIC19.11■□□□□ 0.65
NKX6-3A6NJ46 TSKU-201ENST00000333090 2712 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
NKX6-3A6NJ46 EVX1-201ENST00000222761 1500 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
NKX6-3A6NJ46 RBM42-206ENST00000592202 1469 ntTSL 5 BASIC19.11■□□□□ 0.65
NKX6-3A6NJ46 NAXE-202ENST00000368234 901 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
NKX6-3A6NJ46 ADAMTS13-203ENST00000371910 1074 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
NKX6-3A6NJ46 CENPX-202ENST00000392359 805 ntAPPRIS P1 TSL 2 BASIC19.11■□□□□ 0.65
NKX6-3A6NJ46 ZEB1-AS1-205ENST00000605946 382 ntTSL 5 BASIC19.11■□□□□ 0.65
NKX6-3A6NJ46 MATK-202ENST00000395040 1907 ntAPPRIS ALT2 TSL 1 (best) BASIC19.11■□□□□ 0.65
NKX6-3A6NJ46 PINK1-201ENST00000321556 2660 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
NKX6-3A6NJ46 CCDC92-209ENST00000545891 1790 ntAPPRIS P1 TSL 2 BASIC19.11■□□□□ 0.65
NKX6-3A6NJ46 MAP3K3-210ENST00000584573 2480 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
NKX6-3A6NJ46 STMN4-204ENST00000519997 1623 ntTSL 2 BASIC19.11■□□□□ 0.65
NKX6-3A6NJ46 UXS1-201ENST00000283148 2099 ntAPPRIS ALT1 TSL 2 BASIC19.1■□□□□ 0.65
NKX6-3A6NJ46 RUNDC3A-202ENST00000426726 2048 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
NKX6-3A6NJ46 ZNF205-201ENST00000219091 1947 ntAPPRIS P1 TSL 5 BASIC19.1■□□□□ 0.65
NKX6-3A6NJ46 FGF22-201ENST00000215530 1311 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
NKX6-3A6NJ46 WBP1-203ENST00000409737 1110 ntAPPRIS ALT1 TSL 5 BASIC19.1■□□□□ 0.65
NKX6-3A6NJ46 LINC00092-201ENST00000412122 1726 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
NKX6-3A6NJ46 SHD-204ENST00000599689 1729 ntTSL 5 BASIC19.1■□□□□ 0.65
NKX6-3A6NJ46 ERMP1-202ENST00000339450 5376 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
NKX6-3A6NJ46 IKBIP-202ENST00000342502 1645 ntAPPRIS ALT1 TSL 1 (best) BASIC19.1■□□□□ 0.65
NKX6-3A6NJ46 OBSL1-214ENST00000603926 5520 ntTSL 5 BASIC19.1■□□□□ 0.65
NKX6-3A6NJ46 LIMD2-205ENST00000578402 1534 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
NKX6-3A6NJ46 BOP1-205ENST00000569669 2303 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
NKX6-3A6NJ46 ST3GAL5-269ENST00000640992 2292 ntAPPRIS ALT2 TSL 5 BASIC19.09■□□□□ 0.65
NKX6-3A6NJ46 POLR2H-208ENST00000456318 1802 ntAPPRIS P1 TSL 5 BASIC19.09■□□□□ 0.65
NKX6-3A6NJ46 NKX6-3-201ENST00000518699 1352 ntAPPRIS P1 TSL 5 BASIC19.09■□□□□ 0.65
NKX6-3A6NJ46 SKI-201ENST00000378536 5613 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
NKX6-3A6NJ46 ZNF767P-202ENST00000472212 2100 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
NKX6-3A6NJ46 CBARP-202ENST00000382477 2453 ntAPPRIS ALT2 TSL 5 BASIC19.09■□□□□ 0.65
NKX6-3A6NJ46 ID2-201ENST00000234091 2041 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
NKX6-3A6NJ46 RARA-204ENST00000394089 2024 ntAPPRIS P1 TSL 2 BASIC19.09■□□□□ 0.65
NKX6-3A6NJ46 NDEL1-201ENST00000334527 2372 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
NKX6-3A6NJ46 STMN4-201ENST00000265770 1250 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
NKX6-3A6NJ46 TMEM240-203ENST00000624426 796 ntTSL 3 BASIC19.09■□□□□ 0.65
NKX6-3A6NJ46 ZDHHC14-203ENST00000359775 7380 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
NKX6-3A6NJ46 ZNF444-211ENST00000592949 1906 ntAPPRIS ALT2 TSL 1 (best) BASIC19.09■□□□□ 0.65
NKX6-3A6NJ46 OSCAR-207ENST00000391761 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC19.09■□□□□ 0.65
NKX6-3A6NJ46 MADCAM1-206ENST00000617201 1491 ntAPPRIS ALT2 TSL 5 BASIC19.09■□□□□ 0.65
NKX6-3A6NJ46 MADCAM1-207ENST00000619333 1485 ntAPPRIS ALT2 TSL 5 BASIC19.09■□□□□ 0.65
NKX6-3A6NJ46 MADCAM1-210ENST00000622462 1461 ntAPPRIS ALT2 TSL 5 BASIC19.09■□□□□ 0.65
NKX6-3A6NJ46 C1orf35-201ENST00000272139 1427 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
NKX6-3A6NJ46 ALDH1A3-203ENST00000557963 1670 ntBASIC19.08■□□□□ 0.65
NKX6-3A6NJ46 SMOX-202ENST00000305958 2233 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
NKX6-3A6NJ46 C6orf89-201ENST00000355190 1309 ntAPPRIS P3 TSL 1 (best) BASIC19.08■□□□□ 0.65
NKX6-3A6NJ46 GUSBP5-201ENST00000418136 578 ntBASIC19.08■□□□□ 0.64
NKX6-3A6NJ46 AC055876.1-201ENST00000430589 895 ntTSL 2 BASIC19.08■□□□□ 0.64
NKX6-3A6NJ46 KRT16P3-201ENST00000439127 1283 ntBASIC19.08■□□□□ 0.64
NKX6-3A6NJ46 AC010997.5-201ENST00000609182 354 ntBASIC19.08■□□□□ 0.64
NKX6-3A6NJ46 MIR6722-201ENST00000617286 78 ntBASIC19.08■□□□□ 0.64
NKX6-3A6NJ46 GDF6-202ENST00000620978 973 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
NKX6-3A6NJ46 MED25-211ENST00000617849 1548 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
NKX6-3A6NJ46 SLC10A4-201ENST00000273861 1790 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
NKX6-3A6NJ46 HRK-201ENST00000257572 5789 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
NKX6-3A6NJ46 DTX4-201ENST00000227451 5642 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
NKX6-3A6NJ46 APOE-201ENST00000252486 1208 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
NKX6-3A6NJ46 FOXP1-201ENST00000318779 843 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
NKX6-3A6NJ46 C9orf47-202ENST00000375850 859 ntAPPRIS ALT2 TSL 3 BASIC19.07■□□□□ 0.64
NKX6-3A6NJ46 C14orf80-211ENST00000450383 1107 ntAPPRIS ALT2 TSL 5 BASIC19.07■□□□□ 0.64
NKX6-3A6NJ46 CREM-229ENST00000474362 1030 ntTSL 2 BASIC19.07■□□□□ 0.64
NKX6-3A6NJ46 CUL4A-209ENST00000488558 1111 ntTSL 3 BASIC19.07■□□□□ 0.64
NKX6-3A6NJ46 TIE1-210ENST00000538015 1140 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
NKX6-3A6NJ46 CACNA1B-201ENST00000277549 7158 ntAPPRIS ALT2 TSL 1 (best) BASIC19.07■□□□□ 0.64
NKX6-3A6NJ46 CACNA1B-202ENST00000277551 7158 ntAPPRIS ALT2 TSL 5 BASIC19.07■□□□□ 0.64
NKX6-3A6NJ46 RMI2-201ENST00000312499 1457 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
NKX6-3A6NJ46 AKT2-206ENST00000392038 5300 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
NKX6-3A6NJ46 TMEM179-204ENST00000556573 1430 ntAPPRIS P1 TSL 3 BASIC19.07■□□□□ 0.64
NKX6-3A6NJ46 RCC2-201ENST00000375433 2030 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
NKX6-3A6NJ46 REST-206ENST00000612429 1376 ntTSL 5 BASIC19.06■□□□□ 0.64
NKX6-3A6NJ46 REST-207ENST00000616975 1370 ntTSL 5 BASIC19.06■□□□□ 0.64
NKX6-3A6NJ46 REST-212ENST00000640343 1352 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
NKX6-3A6NJ46 LRRC24-201ENST00000529415 1758 ntAPPRIS P2 TSL 1 (best) BASIC19.06■□□□□ 0.64
NKX6-3A6NJ46 DCAF15-201ENST00000254337 2278 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
NKX6-3A6NJ46 ARFIP2-202ENST00000396777 1868 ntAPPRIS P1 TSL 2 BASIC19.06■□□□□ 0.64
NKX6-3A6NJ46 C12orf75-207ENST00000552457 689 ntTSL 5 BASIC19.06■□□□□ 0.64
NKX6-3A6NJ46 MMP24-201ENST00000246186 4414 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
NKX6-3A6NJ46 ZFYVE19-201ENST00000299173 1555 ntAPPRIS ALT2 TSL 1 (best) BASIC19.06■□□□□ 0.64
NKX6-3A6NJ46 MFSD7-202ENST00000347950 1599 ntTSL 2 BASIC19.06■□□□□ 0.64
NKX6-3A6NJ46 HHEX-201ENST00000282728 1727 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
NKX6-3A6NJ46 SMARCB1-201ENST00000263121 1690 ntAPPRIS P3 TSL 1 (best) BASIC19.05■□□□□ 0.64
NKX6-3A6NJ46 CYS1-201ENST00000381813 2738 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
NKX6-3A6NJ46 NRXN2-203ENST00000377551 6373 ntAPPRIS P3 TSL 1 (best) BASIC19.05■□□□□ 0.64
NKX6-3A6NJ46 C1QTNF12-201ENST00000330388 1036 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
NKX6-3A6NJ46 ANAPC13-201ENST00000354910 1209 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
NKX6-3A6NJ46 ERRFI1-203ENST00000469499 995 ntTSL 3 BASIC19.05■□□□□ 0.64
NKX6-3A6NJ46 NKIRAS2-209ENST00000479407 992 ntTSL 3 BASIC19.05■□□□□ 0.64
NKX6-3A6NJ46 CHTF8-205ENST00000519520 856 ntTSL 2 BASIC19.05■□□□□ 0.64
NKX6-3A6NJ46 FAM173A-207ENST00000569529 1052 ntAPPRIS P3 TSL 1 (best) BASIC19.05■□□□□ 0.64
NKX6-3A6NJ46 LETM1-201ENST00000302787 5462 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
NKX6-3A6NJ46 MEGF6-202ENST00000356575 5455 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
NKX6-3A6NJ46 CAMK2N2-201ENST00000296238 1362 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
NKX6-3A6NJ46 SMOX-201ENST00000278795 2164 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
NKX6-3A6NJ46 JMJD1C-AS1-201ENST00000609436 1335 ntBASIC19.04■□□□□ 0.64
NKX6-3A6NJ46 AC005703.6-201ENST00000623265 1329 ntBASIC19.04■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 38.9 ms