Protein–RNA interactions for Protein: Q8IV63

VRK3, Inactive serine/threonine-protein kinase VRK3, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3Q8IV63 RNPEP-202ENST00000367286 2282 ntTSL 5 BASIC22.45■■□□□ 1.18
VRK3Q8IV63 RABGGTA-202ENST00000399409 2265 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
VRK3Q8IV63 PREB-201ENST00000260643 2166 ntAPPRIS P1 TSL 1 (best) BASIC22.44■■□□□ 1.18
VRK3Q8IV63 MT1E-201ENST00000306061 704 ntAPPRIS P1 TSL 1 (best) BASIC22.44■■□□□ 1.18
VRK3Q8IV63 SLC25A29-201ENST00000359232 2385 ntAPPRIS P1 TSL 1 (best) BASIC22.44■■□□□ 1.18
VRK3Q8IV63 LIMD2-205ENST00000578402 1534 ntAPPRIS P1 TSL 1 (best) BASIC22.44■■□□□ 1.18
VRK3Q8IV63 HSF4-225ENST00000584272 1549 ntTSL 1 (best) BASIC22.44■■□□□ 1.18
VRK3Q8IV63 RBM42-206ENST00000592202 1469 ntTSL 5 BASIC22.44■■□□□ 1.18
VRK3Q8IV63 PON2-217ENST00000633192 1876 ntTSL 1 (best) BASIC22.44■■□□□ 1.18
VRK3Q8IV63 LINC01578-209ENST00000557682 2683 ntTSL 2 BASIC22.44■■□□□ 1.18
VRK3Q8IV63 ZFP91-CNTF-201ENST00000389919 2319 ntAPPRIS P5 TSL 2 BASIC22.43■■□□□ 1.18
VRK3Q8IV63 EI24-213ENST00000618552 1747 ntTSL 5 BASIC22.43■■□□□ 1.18
VRK3Q8IV63 C7orf49-203ENST00000430372 1579 ntTSL 5 BASIC22.43■■□□□ 1.18
VRK3Q8IV63 MADCAM1-206ENST00000617201 1491 ntAPPRIS ALT2 TSL 5 BASIC22.43■■□□□ 1.18
VRK3Q8IV63 MADCAM1-207ENST00000619333 1485 ntAPPRIS ALT2 TSL 5 BASIC22.43■■□□□ 1.18
VRK3Q8IV63 MADCAM1-210ENST00000622462 1461 ntAPPRIS ALT2 TSL 5 BASIC22.43■■□□□ 1.18
VRK3Q8IV63 MARCH2-201ENST00000215555 1376 ntAPPRIS P1 TSL 5 BASIC22.43■■□□□ 1.18
VRK3Q8IV63 NPW-201ENST00000329610 498 ntAPPRIS P2 TSL 1 (best) BASIC22.43■■□□□ 1.18
VRK3Q8IV63 GUCD1-202ENST00000402766 865 ntTSL 2 BASIC22.43■■□□□ 1.18
VRK3Q8IV63 HES6-204ENST00000409182 863 ntTSL 2 BASIC22.43■■□□□ 1.18
VRK3Q8IV63 CREM-229ENST00000474362 1030 ntTSL 2 BASIC22.43■■□□□ 1.18
VRK3Q8IV63 SNHG12-212ENST00000531126 719 ntTSL 1 (best) BASIC22.43■■□□□ 1.18
VRK3Q8IV63 NECTIN2-202ENST00000252485 2112 ntAPPRIS P3 TSL 1 (best) BASIC22.43■■□□□ 1.18
VRK3Q8IV63 JMJD1C-AS1-201ENST00000609436 1335 ntBASIC22.42■■□□□ 1.18
VRK3Q8IV63 TST-201ENST00000249042 1211 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
VRK3Q8IV63 C1QTNF12-201ENST00000330388 1036 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
VRK3Q8IV63 WBP1-203ENST00000409737 1110 ntAPPRIS ALT1 TSL 5 BASIC22.42■■□□□ 1.18
VRK3Q8IV63 TRIR-205ENST00000592273 783 ntTSL 3 BASIC22.42■■□□□ 1.18
VRK3Q8IV63 PPP2R2C-203ENST00000382599 1807 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
VRK3Q8IV63 LINC00092-201ENST00000412122 1726 ntTSL 1 (best) BASIC22.42■■□□□ 1.18
VRK3Q8IV63 NPAS1-208ENST00000602212 2117 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
VRK3Q8IV63 SNX18-201ENST00000326277 2063 ntTSL 2 BASIC22.42■■□□□ 1.18
VRK3Q8IV63 CTSF-201ENST00000310325 2035 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
VRK3Q8IV63 MMD-201ENST00000262065 2735 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
VRK3Q8IV63 FEZ1-202ENST00000366139 1053 ntTSL 2 BASIC22.41■■□□□ 1.18
VRK3Q8IV63 NAXE-202ENST00000368234 901 ntTSL 1 (best) BASIC22.41■■□□□ 1.18
VRK3Q8IV63 NAA30-203ENST00000555166 1294 ntAPPRIS ALT2 TSL 2 BASIC22.41■■□□□ 1.18
VRK3Q8IV63 TMEM170A-206ENST00000569276 609 ntTSL 2 BASIC22.41■■□□□ 1.18
VRK3Q8IV63 LSM7-203ENST00000585409 512 ntTSL 2 BASIC22.41■■□□□ 1.18
VRK3Q8IV63 HNRNPUL1-222ENST00000617774 451 ntTSL 5 BASIC22.41■■□□□ 1.18
VRK3Q8IV63 AC243829.1-202ENST00000618848 486 ntTSL 3 BASIC22.41■■□□□ 1.18
VRK3Q8IV63 EI24-204ENST00000527235 1625 ntTSL 5 BASIC22.41■■□□□ 1.18
VRK3Q8IV63 ARMC10-204ENST00000425331 2443 ntTSL 2 BASIC22.41■■□□□ 1.18
VRK3Q8IV63 NRL-202ENST00000396997 1517 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
VRK3Q8IV63 PSIP1-202ENST00000380716 1889 ntTSL 5 BASIC22.41■■□□□ 1.18
VRK3Q8IV63 ARMC10-208ENST00000441711 2524 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
VRK3Q8IV63 TMEM179-204ENST00000556573 1430 ntAPPRIS P1 TSL 3 BASIC22.4■■□□□ 1.18
VRK3Q8IV63 TMUB1-201ENST00000297533 1353 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
VRK3Q8IV63 STMN4-204ENST00000519997 1623 ntTSL 2 BASIC22.4■■□□□ 1.18
VRK3Q8IV63 STMN4-201ENST00000265770 1250 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
VRK3Q8IV63 MAGI2-AS3-201ENST00000414797 1072 ntTSL 2 BASIC22.4■■□□□ 1.18
VRK3Q8IV63 TSPY9P-201ENST00000440215 945 ntBASIC22.4■■□□□ 1.18
VRK3Q8IV63 TSPY11P-201ENST00000442607 1045 ntBASIC22.4■■□□□ 1.18
VRK3Q8IV63 AF117829.1-207ENST00000504145 1572 ntTSL 3 BASIC22.4■■□□□ 1.18
VRK3Q8IV63 SCAMP3-202ENST00000355379 1537 ntTSL 1 (best) BASIC22.4■■□□□ 1.18
VRK3Q8IV63 MED25-211ENST00000617849 1548 ntTSL 1 (best) BASIC22.4■■□□□ 1.18
VRK3Q8IV63 AK8-201ENST00000298545 2072 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
VRK3Q8IV63 BTBD2-201ENST00000255608 2649 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
VRK3Q8IV63 P3H3-201ENST00000290510 2632 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
VRK3Q8IV63 ALDH1A3-203ENST00000557963 1670 ntBASIC22.39■■□□□ 1.18
VRK3Q8IV63 RAB11FIP1-203ENST00000522727 1866 ntTSL 1 (best) BASIC22.39■■□□□ 1.18
VRK3Q8IV63 BCL2L12-212ENST00000616144 1854 ntAPPRIS P3 TSL 1 (best) BASIC22.39■■□□□ 1.18
VRK3Q8IV63 TLX1-203ENST00000467928 1838 ntTSL 1 (best) BASIC22.39■■□□□ 1.17
VRK3Q8IV63 NKX2-3-201ENST00000344586 2097 ntAPPRIS P1 TSL 2 BASIC22.39■■□□□ 1.17
VRK3Q8IV63 FBXO45-201ENST00000311630 5899 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.17
VRK3Q8IV63 PEMT-202ENST00000395781 1050 ntTSL 2 BASIC22.39■■□□□ 1.17
VRK3Q8IV63 GUSBP5-201ENST00000418136 578 ntBASIC22.39■■□□□ 1.17
VRK3Q8IV63 AL136090.1-201ENST00000446849 366 ntTSL 3 BASIC22.39■■□□□ 1.17
VRK3Q8IV63 UNC93B8-201ENST00000511903 705 ntBASIC22.39■■□□□ 1.17
VRK3Q8IV63 C12orf75-207ENST00000552457 689 ntTSL 5 BASIC22.39■■□□□ 1.17
VRK3Q8IV63 DUSP22-214ENST00000605315 867 ntTSL 5 BASIC22.39■■□□□ 1.17
VRK3Q8IV63 ADORA2B-201ENST00000304222 1735 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.17
VRK3Q8IV63 DYRK3-203ENST00000367109 2163 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.17
VRK3Q8IV63 KISS1R-201ENST00000234371 1625 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.17
VRK3Q8IV63 IKBIP-202ENST00000342502 1645 ntAPPRIS ALT1 TSL 1 (best) BASIC22.39■■□□□ 1.17
VRK3Q8IV63 ZFYVE19-201ENST00000299173 1555 ntAPPRIS ALT2 TSL 1 (best) BASIC22.38■■□□□ 1.17
VRK3Q8IV63 SAMD13-205ENST00000370673 1567 ntTSL 2 BASIC22.38■■□□□ 1.17
VRK3Q8IV63 FGF22-201ENST00000215530 1311 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
VRK3Q8IV63 SNX10-207ENST00000446848 2613 ntAPPRIS P2 TSL 1 (best) BASIC22.38■■□□□ 1.17
VRK3Q8IV63 TMSB15B-202ENST00000436583 2186 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
VRK3Q8IV63 ZNF302-211ENST00000509528 577 ntTSL 4 BASIC22.38■■□□□ 1.17
VRK3Q8IV63 RMI2-201ENST00000312499 1457 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
VRK3Q8IV63 CHST6-202ENST00000390664 2093 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
VRK3Q8IV63 MFSD7-202ENST00000347950 1599 ntTSL 2 BASIC22.38■■□□□ 1.17
VRK3Q8IV63 NKX6-3-201ENST00000518699 1352 ntAPPRIS P1 TSL 5 BASIC22.38■■□□□ 1.17
VRK3Q8IV63 GNPTAB-201ENST00000299314 5701 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
VRK3Q8IV63 TMEM54-201ENST00000329151 871 ntTSL 1 (best) BASIC22.37■■□□□ 1.17
VRK3Q8IV63 RPL31-208ENST00000409733 825 ntAPPRIS P3 TSL 1 (best) BASIC22.37■■□□□ 1.17
VRK3Q8IV63 CLTA-206ENST00000466396 695 ntTSL 2 BASIC22.37■■□□□ 1.17
VRK3Q8IV63 VSTM4-201ENST00000298454 2170 ntAPPRIS P3 TSL 2 BASIC22.37■■□□□ 1.17
VRK3Q8IV63 CAMK2N1-201ENST00000375078 2336 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
VRK3Q8IV63 C1orf35-201ENST00000272139 1427 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
VRK3Q8IV63 RAX2-202ENST00000555978 2145 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
VRK3Q8IV63 PON2-202ENST00000433091 1726 ntTSL 1 (best) BASIC22.37■■□□□ 1.17
VRK3Q8IV63 PFKP-201ENST00000381072 1698 ntTSL 1 (best) BASIC22.36■■□□□ 1.17
VRK3Q8IV63 SPHK1-210ENST00000592299 1821 ntAPPRIS P3 TSL 1 (best) BASIC22.36■■□□□ 1.17
VRK3Q8IV63 LRRC61-205ENST00000493307 1456 ntAPPRIS P1 TSL 5 BASIC22.36■■□□□ 1.17
VRK3Q8IV63 MIF-201ENST00000215754 939 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
VRK3Q8IV63 MDK-202ENST00000395565 951 ntAPPRIS P2 TSL 2 BASIC22.36■■□□□ 1.17
VRK3Q8IV63 NKIRAS2-209ENST00000479407 992 ntTSL 3 BASIC22.36■■□□□ 1.17
Retrieved 100 of 98,524 protein–RNA pairs in 22.4 ms