Protein–RNA interactions for Protein: Q7Z6J8

UBE3D, E3 ubiquitin-protein ligase E3D, humanhuman

Predictions only

Length 389 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3DQ7Z6J8 SNHG12-212ENST00000531126 719 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
UBE3DQ7Z6J8 EIF3J-203ENST00000535391 925 ntTSL 2 BASIC21.77■■□□□ 1.08
UBE3DQ7Z6J8 Z92544.1-202ENST00000571933 1220 ntBASIC21.77■■□□□ 1.08
UBE3DQ7Z6J8 ZNF180-205ENST00000587047 525 ntTSL 4 BASIC21.77■■□□□ 1.08
UBE3DQ7Z6J8 AC005551.1-201ENST00000641816 493 ntAPPRIS P1 BASIC21.77■■□□□ 1.08
UBE3DQ7Z6J8 TMEM44-202ENST00000347147 2245 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
UBE3DQ7Z6J8 SPIRE1-203ENST00000410092 5533 ntAPPRIS P3 TSL 1 (best) BASIC21.77■■□□□ 1.08
UBE3DQ7Z6J8 LGALS9B-202ENST00000423676 1713 ntAPPRIS ALT2 TSL 1 (best) BASIC21.77■■□□□ 1.08
UBE3DQ7Z6J8 PKIG-206ENST00000372892 1338 ntAPPRIS P1 TSL 2 BASIC21.77■■□□□ 1.07
UBE3DQ7Z6J8 AK8-201ENST00000298545 2072 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
UBE3DQ7Z6J8 HSF4-225ENST00000584272 1549 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
UBE3DQ7Z6J8 PSIP1-202ENST00000380716 1889 ntTSL 5 BASIC21.76■■□□□ 1.07
UBE3DQ7Z6J8 AC239859.2-201ENST00000444165 318 ntBASIC21.76■■□□□ 1.07
UBE3DQ7Z6J8 ATP11B-209ENST00000493826 963 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
UBE3DQ7Z6J8 HOXC-AS1-201ENST00000505700 548 ntTSL 2 BASIC21.76■■□□□ 1.07
UBE3DQ7Z6J8 FAR2P4-203ENST00000560285 1739 ntTSL 2 BASIC21.76■■□□□ 1.07
UBE3DQ7Z6J8 CAPNS1-207ENST00000589146 578 ntTSL 3 BASIC21.76■■□□□ 1.07
UBE3DQ7Z6J8 EI24-204ENST00000527235 1625 ntTSL 5 BASIC21.76■■□□□ 1.07
UBE3DQ7Z6J8 TLX1-203ENST00000467928 1838 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
UBE3DQ7Z6J8 LINC00092-201ENST00000412122 1726 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
UBE3DQ7Z6J8 CNTFR-201ENST00000351266 1910 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
UBE3DQ7Z6J8 HMX3-201ENST00000357878 1173 ntAPPRIS P1 TSL 2 BASIC21.75■■□□□ 1.07
UBE3DQ7Z6J8 FAM173A-207ENST00000569529 1052 ntAPPRIS P3 TSL 1 (best) BASIC21.75■■□□□ 1.07
UBE3DQ7Z6J8 PPIL6-203ENST00000440797 1693 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
UBE3DQ7Z6J8 ALDH1A3-203ENST00000557963 1670 ntBASIC21.75■■□□□ 1.07
UBE3DQ7Z6J8 MED25-211ENST00000617849 1548 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
UBE3DQ7Z6J8 CHST6-202ENST00000390664 2093 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
UBE3DQ7Z6J8 P3H3-201ENST00000290510 2632 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
UBE3DQ7Z6J8 PON2-202ENST00000433091 1726 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
UBE3DQ7Z6J8 ATP5A1-220ENST00000593152 2258 ntTSL 2 BASIC21.75■■□□□ 1.07
UBE3DQ7Z6J8 C7orf49-203ENST00000430372 1579 ntTSL 5 BASIC21.74■■□□□ 1.07
UBE3DQ7Z6J8 AC099805.1-201ENST00000523987 1797 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
UBE3DQ7Z6J8 NKX2-3-202ENST00000622383 1986 ntTSL 5 BASIC21.74■■□□□ 1.07
UBE3DQ7Z6J8 FOSL1-202ENST00000448083 1427 ntTSL 2 BASIC21.74■■□□□ 1.07
UBE3DQ7Z6J8 SNX10-207ENST00000446848 2613 ntAPPRIS P2 TSL 1 (best) BASIC21.74■■□□□ 1.07
UBE3DQ7Z6J8 FAM72B-203ENST00000452190 748 ntTSL 3 BASIC21.74■■□□□ 1.07
UBE3DQ7Z6J8 HES6-201ENST00000272937 1454 ntAPPRIS P3 TSL 1 (best) BASIC21.74■■□□□ 1.07
UBE3DQ7Z6J8 LSR-201ENST00000347609 1880 ntAPPRIS ALT2 TSL 1 (best) BASIC21.74■■□□□ 1.07
UBE3DQ7Z6J8 LSR-213ENST00000605618 1885 ntAPPRIS ALT2 TSL 1 (best) BASIC21.74■■□□□ 1.07
UBE3DQ7Z6J8 VSTM4-201ENST00000298454 2170 ntAPPRIS P3 TSL 2 BASIC21.74■■□□□ 1.07
UBE3DQ7Z6J8 D2HGDH-203ENST00000403782 2208 ntTSL 2 BASIC21.74■■□□□ 1.07
UBE3DQ7Z6J8 TTC39A-203ENST00000371747 1876 ntTSL 2 BASIC21.73■■□□□ 1.07
UBE3DQ7Z6J8 CAMK2N1-201ENST00000375078 2336 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
UBE3DQ7Z6J8 MID1IP1-203ENST00000457894 1902 ntAPPRIS P1 TSL 3 BASIC21.73■■□□□ 1.07
UBE3DQ7Z6J8 C1QTNF12-201ENST00000330388 1036 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
UBE3DQ7Z6J8 CLTA-204ENST00000433436 1235 ntAPPRIS ALT1 TSL 1 (best) BASIC21.73■■□□□ 1.07
UBE3DQ7Z6J8 AL136090.1-201ENST00000446849 366 ntTSL 3 BASIC21.73■■□□□ 1.07
UBE3DQ7Z6J8 CLTA-209ENST00000538225 1181 ntTSL 2 BASIC21.73■■□□□ 1.07
UBE3DQ7Z6J8 CLTA-210ENST00000540080 989 ntTSL 2 BASIC21.73■■□□□ 1.07
UBE3DQ7Z6J8 TMEM170A-206ENST00000569276 609 ntTSL 2 BASIC21.73■■□□□ 1.07
UBE3DQ7Z6J8 GNPTAB-201ENST00000299314 5701 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
UBE3DQ7Z6J8 DCAF4-206ENST00000509153 1521 ntAPPRIS ALT2 TSL 2 BASIC21.73■■□□□ 1.07
UBE3DQ7Z6J8 PARP9-207ENST00000492382 1837 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
UBE3DQ7Z6J8 MARCH2-201ENST00000215555 1376 ntAPPRIS P1 TSL 5 BASIC21.73■■□□□ 1.07
UBE3DQ7Z6J8 FAM107A-203ENST00000447756 1432 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
UBE3DQ7Z6J8 RPP38-201ENST00000378197 1457 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
UBE3DQ7Z6J8 PLEKHB1-201ENST00000227214 2016 ntAPPRIS ALT1 TSL 1 (best) BASIC21.72■■□□□ 1.07
UBE3DQ7Z6J8 PPP1R1B-201ENST00000254079 1845 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
UBE3DQ7Z6J8 CENPX-202ENST00000392359 805 ntAPPRIS P1 TSL 2 BASIC21.72■■□□□ 1.07
UBE3DQ7Z6J8 HMGA2-202ENST00000393577 611 ntTSL 3 BASIC21.72■■□□□ 1.07
UBE3DQ7Z6J8 LSM7-203ENST00000585409 512 ntTSL 2 BASIC21.72■■□□□ 1.07
UBE3DQ7Z6J8 MIR4787-201ENST00000607364 84 ntBASIC21.72■■□□□ 1.07
UBE3DQ7Z6J8 AC092028.1-203ENST00000608262 953 ntBASIC21.72■■□□□ 1.07
UBE3DQ7Z6J8 AL035685.1-201ENST00000636663 812 ntBASIC21.72■■□□□ 1.07
UBE3DQ7Z6J8 ATAD3B-201ENST00000308647 2448 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
UBE3DQ7Z6J8 ZFYVE19-201ENST00000299173 1555 ntAPPRIS ALT2 TSL 1 (best) BASIC21.72■■□□□ 1.07
UBE3DQ7Z6J8 ZBTB45-205ENST00000600990 2159 ntAPPRIS P1 TSL 5 BASIC21.72■■□□□ 1.07
UBE3DQ7Z6J8 ADORA2B-201ENST00000304222 1735 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
UBE3DQ7Z6J8 HACD3-205ENST00000562901 1797 ntTSL 5 BASIC21.71■■□□□ 1.07
UBE3DQ7Z6J8 CCM2L-201ENST00000262659 2523 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
UBE3DQ7Z6J8 MTNR1B-201ENST00000257068 1565 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
UBE3DQ7Z6J8 IKBIP-202ENST00000342502 1645 ntAPPRIS ALT1 TSL 1 (best) BASIC21.71■■□□□ 1.07
UBE3DQ7Z6J8 NPW-201ENST00000329610 498 ntAPPRIS P2 TSL 1 (best) BASIC21.71■■□□□ 1.07
UBE3DQ7Z6J8 GUCD1-202ENST00000402766 865 ntTSL 2 BASIC21.71■■□□□ 1.07
UBE3DQ7Z6J8 KRT125P-201ENST00000546827 989 ntBASIC21.71■■□□□ 1.07
UBE3DQ7Z6J8 AC243829.1-202ENST00000618848 486 ntTSL 3 BASIC21.71■■□□□ 1.07
UBE3DQ7Z6J8 STARD3NL-201ENST00000009041 1728 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
UBE3DQ7Z6J8 SPHK1-210ENST00000592299 1821 ntAPPRIS P3 TSL 1 (best) BASIC21.71■■□□□ 1.07
UBE3DQ7Z6J8 RBM42-206ENST00000592202 1469 ntTSL 5 BASIC21.71■■□□□ 1.07
UBE3DQ7Z6J8 NKX6-3-201ENST00000518699 1352 ntAPPRIS P1 TSL 5 BASIC21.7■■□□□ 1.06
UBE3DQ7Z6J8 PRSS56-201ENST00000449534 2157 ntAPPRIS ALT2 TSL 5 BASIC21.7■■□□□ 1.06
UBE3DQ7Z6J8 PRSS56-203ENST00000617714 2158 ntAPPRIS P2 TSL 5 BASIC21.7■■□□□ 1.06
UBE3DQ7Z6J8 SAMD13-205ENST00000370673 1567 ntTSL 2 BASIC21.7■■□□□ 1.06
UBE3DQ7Z6J8 PFKP-201ENST00000381072 1698 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
UBE3DQ7Z6J8 SPANXA2-OT1-201ENST00000622372 1686 ntTSL 2 BASIC21.69■■□□□ 1.06
UBE3DQ7Z6J8 CHSY1-201ENST00000254190 4550 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
UBE3DQ7Z6J8 DHH-201ENST00000266991 1936 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
UBE3DQ7Z6J8 GBX2-201ENST00000306318 2123 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
UBE3DQ7Z6J8 IGFBP3-202ENST00000381083 1050 ntAPPRIS ALT1 TSL 5 BASIC21.69■■□□□ 1.06
UBE3DQ7Z6J8 SYCE1-204ENST00000432597 1254 ntAPPRIS ALT2 TSL 1 (best) BASIC21.69■■□□□ 1.06
UBE3DQ7Z6J8 CDYL-203ENST00000397588 2184 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
UBE3DQ7Z6J8 JMJD1C-AS1-201ENST00000609436 1335 ntBASIC21.69■■□□□ 1.06
UBE3DQ7Z6J8 ROR1-202ENST00000371080 2305 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
UBE3DQ7Z6J8 TMEM179-204ENST00000556573 1430 ntAPPRIS P1 TSL 3 BASIC21.69■■□□□ 1.06
UBE3DQ7Z6J8 CYP2A13-201ENST00000330436 1739 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
UBE3DQ7Z6J8 IFNGR2-202ENST00000381995 1742 ntAPPRIS ALT2 TSL 5 BASIC21.69■■□□□ 1.06
UBE3DQ7Z6J8 TRAP1-202ENST00000538171 2052 ntTSL 2 BASIC21.68■■□□□ 1.06
UBE3DQ7Z6J8 CLEC14A-201ENST00000342213 2267 ntAPPRIS P1 BASIC21.68■■□□□ 1.06
UBE3DQ7Z6J8 DTNB-206ENST00000404103 2384 ntAPPRIS ALT2 TSL 5 BASIC21.68■■□□□ 1.06
UBE3DQ7Z6J8 CNPY3-202ENST00000394142 954 ntTSL 5 BASIC21.68■■□□□ 1.06
Retrieved 100 of 98,524 protein–RNA pairs in 84.1 ms