Protein–RNA interactions for Protein: Q7Z3Y7

KRT28, Keratin, type I cytoskeletal 28, humanhuman

Predictions only

Length 464 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT28Q7Z3Y7 BCL2L12-201ENST00000246784 990 ntAPPRIS ALT2 TSL 1 (best) BASIC31.49■■■□□ 2.63
KRT28Q7Z3Y7 RTCA-202ENST00000370126 538 ntTSL 1 (best) BASIC31.49■■■□□ 2.63
KRT28Q7Z3Y7 CCDC28B-201ENST00000373602 1089 ntAPPRIS P1 TSL 1 (best) BASIC31.49■■■□□ 2.63
KRT28Q7Z3Y7 ANKS3-204ENST00000585773 1946 ntTSL 2 BASIC31.49■■■□□ 2.63
KRT28Q7Z3Y7 NDEL1-202ENST00000380025 2181 ntTSL 5 BASIC31.49■■■□□ 2.63
KRT28Q7Z3Y7 CCND3-223ENST00000616010 2047 ntTSL 5 BASIC31.48■■■□□ 2.63
KRT28Q7Z3Y7 CTNNAL1-202ENST00000374593 761 ntTSL 3 BASIC31.48■■■□□ 2.63
KRT28Q7Z3Y7 MIR3181-201ENST00000578512 73 ntBASIC31.48■■■□□ 2.63
KRT28Q7Z3Y7 AC092437.1-201ENST00000624794 1048 ntBASIC31.48■■■□□ 2.63
KRT28Q7Z3Y7 KCNF1-201ENST00000295082 2289 ntAPPRIS P1 BASIC31.48■■■□□ 2.63
KRT28Q7Z3Y7 ITGA9-203ENST00000422441 2282 ntTSL 1 (best) BASIC31.47■■■□□ 2.63
KRT28Q7Z3Y7 RASSF5-204ENST00000580449 1932 ntTSL 1 (best) BASIC31.47■■■□□ 2.63
KRT28Q7Z3Y7 KIAA2013-202ENST00000376576 2539 ntTSL 2 BASIC31.47■■■□□ 2.63
KRT28Q7Z3Y7 GNAL-201ENST00000269162 1722 ntAPPRIS P1 TSL 2 BASIC31.47■■■□□ 2.63
KRT28Q7Z3Y7 HNRNPAB-201ENST00000355836 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC31.47■■■□□ 2.63
KRT28Q7Z3Y7 AIDA-202ENST00000355727 1072 ntTSL 5 BASIC31.47■■■□□ 2.63
KRT28Q7Z3Y7 GUK1-207ENST00000366726 873 ntAPPRIS P3 TSL 3 BASIC31.47■■■□□ 2.63
KRT28Q7Z3Y7 RPLP2-207ENST00000530797 637 ntAPPRIS P1 TSL 1 (best) BASIC31.47■■■□□ 2.63
KRT28Q7Z3Y7 NEDD4L-225ENST00000589054 1033 ntTSL 3 BASIC31.47■■■□□ 2.63
KRT28Q7Z3Y7 LDHB-203ENST00000396076 1538 ntAPPRIS P1 TSL 5 BASIC31.47■■■□□ 2.63
KRT28Q7Z3Y7 NABP2-202ENST00000341463 1411 ntAPPRIS P1 TSL 3 BASIC31.47■■■□□ 2.63
KRT28Q7Z3Y7 DLK2-202ENST00000372485 1572 ntAPPRIS ALT1 TSL 5 BASIC31.47■■■□□ 2.63
KRT28Q7Z3Y7 PXK-201ENST00000302779 1974 ntTSL 1 (best) BASIC31.47■■■□□ 2.63
KRT28Q7Z3Y7 SLC25A6-201ENST00000381401 2062 ntAPPRIS P1 TSL 1 (best) BASIC31.46■■■□□ 2.63
KRT28Q7Z3Y7 HES3-201ENST00000377898 697 ntAPPRIS P1 TSL 2 BASIC31.46■■■□□ 2.63
KRT28Q7Z3Y7 AC008443.4-201ENST00000503314 456 ntTSL 4 BASIC31.46■■■□□ 2.63
KRT28Q7Z3Y7 SPI1-202ENST00000378538 1403 ntAPPRIS P3 TSL 1 (best) BASIC31.46■■■□□ 2.63
KRT28Q7Z3Y7 PCP4L1-201ENST00000504449 1424 ntAPPRIS P1 TSL 1 (best) BASIC31.46■■■□□ 2.63
KRT28Q7Z3Y7 BIN1-211ENST00000409400 2143 ntTSL 1 (best) BASIC31.46■■■□□ 2.63
KRT28Q7Z3Y7 SHISA5-201ENST00000296444 2369 ntTSL 1 (best) BASIC31.45■■■□□ 2.63
KRT28Q7Z3Y7 KAT8-206ENST00000543774 1846 ntAPPRIS P1 TSL 5 BASIC31.45■■■□□ 2.63
KRT28Q7Z3Y7 AC010501.1-201ENST00000606270 1962 ntBASIC31.45■■■□□ 2.62
KRT28Q7Z3Y7 PTH1R-206ENST00000430002 1947 ntAPPRIS P1 TSL 1 (best) BASIC31.44■■■□□ 2.62
KRT28Q7Z3Y7 TMEM70-203ENST00000517439 617 ntTSL 2 BASIC31.44■■■□□ 2.62
KRT28Q7Z3Y7 MEX3D-201ENST00000402693 2850 ntAPPRIS P2 TSL 1 (best) BASIC31.44■■■□□ 2.62
KRT28Q7Z3Y7 DACT2-202ENST00000366796 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC31.44■■■□□ 2.62
KRT28Q7Z3Y7 AC004691.2-201ENST00000509504 1531 ntAPPRIS P1 TSL 5 BASIC31.44■■■□□ 2.62
KRT28Q7Z3Y7 PYY-201ENST00000360085 1053 ntAPPRIS P2 TSL 1 (best) BASIC31.43■■■□□ 2.62
KRT28Q7Z3Y7 YBX1P1-201ENST00000445822 960 ntBASIC31.43■■■□□ 2.62
KRT28Q7Z3Y7 BCAP29-209ENST00000465919 942 ntTSL 2 BASIC31.43■■■□□ 2.62
KRT28Q7Z3Y7 SLC25A45-206ENST00000526432 894 ntTSL 1 (best) BASIC31.43■■■□□ 2.62
KRT28Q7Z3Y7 TUNAR-203ENST00000554321 767 ntAPPRIS P1 TSL 4 BASIC31.43■■■□□ 2.62
KRT28Q7Z3Y7 AC010336.5-201ENST00000594308 317 ntTSL 3 BASIC31.43■■■□□ 2.62
KRT28Q7Z3Y7 SLC35A2-212ENST00000634665 486 ntTSL 4 BASIC31.43■■■□□ 2.62
KRT28Q7Z3Y7 EVX1-201ENST00000222761 1500 ntTSL 1 (best) BASIC31.43■■■□□ 2.62
KRT28Q7Z3Y7 CNN3-202ENST00000394202 1974 ntTSL 2 BASIC31.43■■■□□ 2.62
KRT28Q7Z3Y7 SNX3-202ENST00000349379 890 ntTSL 2 BASIC31.42■■■□□ 2.62
KRT28Q7Z3Y7 AC062017.1-203ENST00000413029 455 ntTSL 2 BASIC31.42■■■□□ 2.62
KRT28Q7Z3Y7 DNMT3A-206ENST00000406659 1775 ntTSL 1 (best) BASIC31.42■■■□□ 2.62
KRT28Q7Z3Y7 MAD2L2-201ENST00000235310 1860 ntAPPRIS P1 TSL 2 BASIC31.42■■■□□ 2.62
KRT28Q7Z3Y7 CBWD2-203ENST00000416503 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC31.41■■■□□ 2.62
KRT28Q7Z3Y7 TLX3-201ENST00000296921 1493 ntAPPRIS P1 TSL 1 (best) BASIC31.41■■■□□ 2.62
KRT28Q7Z3Y7 CENPVL3-201ENST00000417339 864 ntAPPRIS P1 BASIC31.41■■■□□ 2.62
KRT28Q7Z3Y7 DUX4L2-201ENST00000561772 1275 ntBASIC31.41■■■□□ 2.62
KRT28Q7Z3Y7 DUX4-206ENST00000616166 1275 ntAPPRIS P2 BASIC31.41■■■□□ 2.62
KRT28Q7Z3Y7 DUX4L6-201ENST00000626483 1275 ntBASIC31.41■■■□□ 2.62
KRT28Q7Z3Y7 DUX4L1-201ENST00000627662 1275 ntBASIC31.41■■■□□ 2.62
KRT28Q7Z3Y7 DUX4L8-201ENST00000629013 1275 ntBASIC31.41■■■□□ 2.62
KRT28Q7Z3Y7 DUX4L3-201ENST00000630187 1275 ntBASIC31.41■■■□□ 2.62
KRT28Q7Z3Y7 DUX4L7-201ENST00000630678 1275 ntBASIC31.41■■■□□ 2.62
KRT28Q7Z3Y7 DUX4L5-201ENST00000630834 1275 ntBASIC31.41■■■□□ 2.62
KRT28Q7Z3Y7 RABEP2-203ENST00000544477 1645 ntTSL 2 BASIC31.41■■■□□ 2.62
KRT28Q7Z3Y7 NANOS2-201ENST00000341294 1657 ntAPPRIS P1 BASIC31.41■■■□□ 2.62
KRT28Q7Z3Y7 RARA-AS1-201ENST00000581080 1790 ntTSL 1 (best) BASIC31.4■■■□□ 2.62
KRT28Q7Z3Y7 SPI1-201ENST00000227163 1168 ntAPPRIS ALT1 TSL 2 BASIC31.4■■■□□ 2.62
KRT28Q7Z3Y7 AC009086.3-201ENST00000623486 1008 ntBASIC31.4■■■□□ 2.62
KRT28Q7Z3Y7 CAMK1-201ENST00000256460 1488 ntAPPRIS P1 TSL 1 (best) BASIC31.4■■■□□ 2.62
KRT28Q7Z3Y7 AKAP8L-208ENST00000595465 1933 ntTSL 2 BASIC31.39■■■□□ 2.62
KRT28Q7Z3Y7 CBWD3-213ENST00000618217 1611 ntTSL 1 (best) BASIC31.39■■■□□ 2.62
KRT28Q7Z3Y7 ZMYND11-210ENST00000403354 1664 ntTSL 5 BASIC31.39■■■□□ 2.62
KRT28Q7Z3Y7 TMEM104-205ENST00000582773 1740 ntTSL 2 BASIC31.39■■■□□ 2.62
KRT28Q7Z3Y7 LINC01167-201ENST00000423232 604 ntTSL 3 BASIC31.39■■■□□ 2.62
KRT28Q7Z3Y7 SLC47A1P1-202ENST00000449666 945 ntBASIC31.39■■■□□ 2.62
KRT28Q7Z3Y7 UBFD1-208ENST00000567264 642 ntAPPRIS ALT2 TSL 5 BASIC31.39■■■□□ 2.62
KRT28Q7Z3Y7 RCN2-202ENST00000394883 1366 ntTSL 5 BASIC31.39■■■□□ 2.62
KRT28Q7Z3Y7 SCCPDH-201ENST00000366510 2503 ntAPPRIS P1 TSL 1 (best) BASIC31.39■■■□□ 2.62
KRT28Q7Z3Y7 MYBL1-201ENST00000517885 1714 ntTSL 5 BASIC31.38■■■□□ 2.61
KRT28Q7Z3Y7 BTBD6-201ENST00000327471 1948 ntAPPRIS ALT2 TSL 2 BASIC31.38■■■□□ 2.61
KRT28Q7Z3Y7 PRR25-201ENST00000301698 1209 ntAPPRIS P1 TSL 1 (best) BASIC31.38■■■□□ 2.61
KRT28Q7Z3Y7 CD47-202ENST00000361309 1285 ntTSL 1 (best) BASIC31.38■■■□□ 2.61
KRT28Q7Z3Y7 SRP68-202ENST00000539137 2386 ntTSL 2 BASIC31.37■■■□□ 2.61
KRT28Q7Z3Y7 ASPDH-202ENST00000389208 1040 ntAPPRIS P1 TSL 5 BASIC31.37■■■□□ 2.61
KRT28Q7Z3Y7 KRTAP5-2-201ENST00000412090 1118 ntAPPRIS P1 BASIC31.37■■■□□ 2.61
KRT28Q7Z3Y7 SNAI3-AS1-201ENST00000563261 998 ntTSL 1 (best) BASIC31.37■■■□□ 2.61
KRT28Q7Z3Y7 RINL-202ENST00000591812 1910 ntAPPRIS ALT2 TSL 2 BASIC31.37■■■□□ 2.61
KRT28Q7Z3Y7 EXOC3L4-201ENST00000380069 2293 ntAPPRIS P1 TSL 1 (best) BASIC31.36■■■□□ 2.61
KRT28Q7Z3Y7 ST3GAL5-231ENST00000639119 2131 ntTSL 5 BASIC31.36■■■□□ 2.61
KRT28Q7Z3Y7 IRF3-227ENST00000600911 1637 ntTSL 5 BASIC31.36■■■□□ 2.61
KRT28Q7Z3Y7 FAM219A-202ENST00000379078 770 ntTSL 3 BASIC31.36■■■□□ 2.61
KRT28Q7Z3Y7 FAM219A-205ENST00000379084 893 ntTSL 5 BASIC31.36■■■□□ 2.61
KRT28Q7Z3Y7 IGHV3-20-201ENST00000390606 415 ntAPPRIS P1 BASIC31.36■■■□□ 2.61
KRT28Q7Z3Y7 SUZ12P1-202ENST00000578070 929 ntTSL 5 BASIC31.36■■■□□ 2.61
KRT28Q7Z3Y7 AC126544.1-201ENST00000580842 1059 ntBASIC31.36■■■□□ 2.61
KRT28Q7Z3Y7 RAB43-208ENST00000615093 783 ntTSL 5 BASIC31.36■■■□□ 2.61
KRT28Q7Z3Y7 MRPL14-201ENST00000372014 959 ntAPPRIS P1 TSL 1 (best) BASIC31.35■■■□□ 2.61
KRT28Q7Z3Y7 EIF6-203ENST00000374450 1289 ntAPPRIS P1 TSL 1 (best) BASIC31.35■■■□□ 2.61
KRT28Q7Z3Y7 NMRAL1-202ENST00000404295 1233 ntAPPRIS P1 TSL 1 (best) BASIC31.35■■■□□ 2.61
KRT28Q7Z3Y7 AC024267.6-201ENST00000580603 583 ntTSL 3 BASIC31.35■■■□□ 2.61
KRT28Q7Z3Y7 UBAP1L-203ENST00000559089 1694 ntAPPRIS P1 TSL 1 (best) BASIC31.35■■■□□ 2.61
KRT28Q7Z3Y7 LINC01116-201ENST00000295549 1407 ntTSL 2 BASIC31.34■■■□□ 2.61
Retrieved 100 of 98,524 protein–RNA pairs in 40.5 ms