Protein–RNA interactions for Protein: Q9Y5I3

PCDHA1, Protocadherin alpha-1, humanhuman

Predictions only

Length 950 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA1Q9Y5I3 BBC3-203ENST00000439096 1838 ntAPPRIS P1 TSL 1 (best) BASIC26.51■■□□□ 1.83
PCDHA1Q9Y5I3 TMEM98-202ENST00000394642 1683 ntAPPRIS P1 TSL 2 BASIC26.5■■□□□ 1.83
PCDHA1Q9Y5I3 MATK-202ENST00000395040 1907 ntAPPRIS ALT2 TSL 1 (best) BASIC26.5■■□□□ 1.83
PCDHA1Q9Y5I3 ERGIC1-206ENST00000519860 1000 ntTSL 3 BASIC26.5■■□□□ 1.83
PCDHA1Q9Y5I3 SRR-208ENST00000576848 588 ntTSL 4 BASIC26.5■■□□□ 1.83
PCDHA1Q9Y5I3 AL356740.2-201ENST00000601559 647 ntBASIC26.5■■□□□ 1.83
PCDHA1Q9Y5I3 LINC01881-206ENST00000614114 957 ntTSL 2 BASIC26.5■■□□□ 1.83
PCDHA1Q9Y5I3 OSCAR-205ENST00000359649 1892 ntAPPRIS P4 TSL 2 BASIC26.5■■□□□ 1.83
PCDHA1Q9Y5I3 OSCAR-207ENST00000391761 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC26.5■■□□□ 1.83
PCDHA1Q9Y5I3 HDGFL2-210ENST00000621835 2255 ntAPPRIS ALT2 TSL 1 (best) BASIC26.5■■□□□ 1.83
PCDHA1Q9Y5I3 RPP21-222ENST00000433076 577 ntTSL 2 BASIC26.49■■□□□ 1.83
PCDHA1Q9Y5I3 TRIR-202ENST00000588213 841 ntTSL 3 BASIC26.49■■□□□ 1.83
PCDHA1Q9Y5I3 AL117336.3-202ENST00000605499 489 ntTSL 3 BASIC26.49■■□□□ 1.83
PCDHA1Q9Y5I3 AC135731.1-201ENST00000569415 2548 ntBASIC26.49■■□□□ 1.83
PCDHA1Q9Y5I3 TNIP2-206ENST00000510267 2006 ntAPPRIS ALT2 TSL 2 BASIC26.49■■□□□ 1.83
PCDHA1Q9Y5I3 UBXN2A-202ENST00000404924 1557 ntAPPRIS P1 TSL 2 BASIC26.49■■□□□ 1.83
PCDHA1Q9Y5I3 SLC19A1-202ENST00000380010 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC26.49■■□□□ 1.83
PCDHA1Q9Y5I3 ARSB-206ENST00000565165 1772 ntTSL 1 (best) BASIC26.48■■□□□ 1.83
PCDHA1Q9Y5I3 PPP1R26-201ENST00000356818 4932 ntAPPRIS P1 TSL 1 (best) BASIC26.48■■□□□ 1.83
PCDHA1Q9Y5I3 AC008406.3-201ENST00000620001 1374 ntBASIC26.48■■□□□ 1.83
PCDHA1Q9Y5I3 ADAD2-202ENST00000315906 1995 ntAPPRIS ALT2 TSL 1 (best) BASIC26.48■■□□□ 1.83
PCDHA1Q9Y5I3 AL357033.1-201ENST00000370520 1933 ntTSL 2 BASIC26.48■■□□□ 1.83
PCDHA1Q9Y5I3 AK3-203ENST00000447596 705 ntTSL 2 BASIC26.48■■□□□ 1.83
PCDHA1Q9Y5I3 AC092343.1-201ENST00000500224 729 ntTSL 3 BASIC26.48■■□□□ 1.83
PCDHA1Q9Y5I3 MIR663AHG-233ENST00000609248 830 ntTSL 5 BASIC26.48■■□□□ 1.83
PCDHA1Q9Y5I3 AMIGO1-201ENST00000369862 2229 ntAPPRIS P1 TSL 5 BASIC26.48■■□□□ 1.83
PCDHA1Q9Y5I3 PABPN1-202ENST00000397276 2768 ntAPPRIS ALT1 TSL 1 (best) BASIC26.48■■□□□ 1.83
PCDHA1Q9Y5I3 SRR-201ENST00000344595 2728 ntAPPRIS P1 TSL 1 (best) BASIC26.48■■□□□ 1.83
PCDHA1Q9Y5I3 BDH1-207ENST00000441275 1605 ntTSL 5 BASIC26.47■■□□□ 1.83
PCDHA1Q9Y5I3 C6orf89-201ENST00000355190 1309 ntAPPRIS P3 TSL 1 (best) BASIC26.47■■□□□ 1.83
PCDHA1Q9Y5I3 SPAG16-201ENST00000272898 1059 ntTSL 5 BASIC26.47■■□□□ 1.83
PCDHA1Q9Y5I3 RNF225-201ENST00000601382 990 ntAPPRIS P1 BASIC26.47■■□□□ 1.83
PCDHA1Q9Y5I3 SLC35A2-201ENST00000247138 1672 ntAPPRIS P3 TSL 1 (best) BASIC26.47■■□□□ 1.83
PCDHA1Q9Y5I3 INPP5J-206ENST00000404453 1613 ntTSL 1 (best) BASIC26.47■■□□□ 1.83
PCDHA1Q9Y5I3 NAXE-201ENST00000368233 1012 ntTSL 2 BASIC26.46■■□□□ 1.83
PCDHA1Q9Y5I3 ERRFI1-204ENST00000474874 479 ntTSL 3 BASIC26.46■■□□□ 1.83
PCDHA1Q9Y5I3 USF2-201ENST00000222305 1634 ntAPPRIS P1 TSL 1 (best) BASIC26.46■■□□□ 1.83
PCDHA1Q9Y5I3 NKX6-3-201ENST00000518699 1352 ntAPPRIS P1 TSL 5 BASIC26.46■■□□□ 1.83
PCDHA1Q9Y5I3 CPSF4-204ENST00000436336 1738 ntAPPRIS ALT1 TSL 1 (best) BASIC26.45■■□□□ 1.83
PCDHA1Q9Y5I3 LRRC24-202ENST00000533758 1701 ntAPPRIS ALT2 TSL 5 BASIC26.45■■□□□ 1.83
PCDHA1Q9Y5I3 SPG21-201ENST00000204566 1822 ntAPPRIS P1 TSL 1 (best) BASIC26.45■■□□□ 1.82
PCDHA1Q9Y5I3 CBWD2-201ENST00000259199 1812 ntAPPRIS P3 TSL 1 (best) BASIC26.45■■□□□ 1.82
PCDHA1Q9Y5I3 KRT72-203ENST00000537672 1813 ntAPPRIS P1 TSL 2 BASIC26.45■■□□□ 1.82
PCDHA1Q9Y5I3 C1orf35-201ENST00000272139 1427 ntAPPRIS P1 TSL 1 (best) BASIC26.45■■□□□ 1.82
PCDHA1Q9Y5I3 TRIM72-202ENST00000613872 1573 ntTSL 1 (best) BASIC26.45■■□□□ 1.82
PCDHA1Q9Y5I3 FAR2P4-203ENST00000560285 1739 ntTSL 2 BASIC26.45■■□□□ 1.82
PCDHA1Q9Y5I3 EVX1-201ENST00000222761 1500 ntTSL 1 (best) BASIC26.44■■□□□ 1.82
PCDHA1Q9Y5I3 TMEM202-AS1-202ENST00000565181 2325 ntBASIC26.44■■□□□ 1.82
PCDHA1Q9Y5I3 MAST4-206ENST00000406374 1066 ntTSL 1 (best) BASIC26.44■■□□□ 1.82
PCDHA1Q9Y5I3 AL136090.1-201ENST00000446849 366 ntTSL 3 BASIC26.44■■□□□ 1.82
PCDHA1Q9Y5I3 AC131281.2-201ENST00000520478 145 ntBASIC26.44■■□□□ 1.82
PCDHA1Q9Y5I3 CD37-213ENST00000598095 1598 ntTSL 2 BASIC26.44■■□□□ 1.82
PCDHA1Q9Y5I3 IL17RE-203ENST00000421412 2158 ntAPPRIS ALT2 TSL 1 (best) BASIC26.44■■□□□ 1.82
PCDHA1Q9Y5I3 REST-206ENST00000612429 1376 ntTSL 5 BASIC26.44■■□□□ 1.82
PCDHA1Q9Y5I3 REST-207ENST00000616975 1370 ntTSL 5 BASIC26.44■■□□□ 1.82
PCDHA1Q9Y5I3 REST-212ENST00000640343 1352 ntTSL 1 (best) BASIC26.44■■□□□ 1.82
PCDHA1Q9Y5I3 IRF3-227ENST00000600911 1637 ntTSL 5 BASIC26.43■■□□□ 1.82
PCDHA1Q9Y5I3 CREB3L3-205ENST00000602257 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC26.43■■□□□ 1.82
PCDHA1Q9Y5I3 AZIN2-201ENST00000294517 2182 ntAPPRIS P1 TSL 1 (best) BASIC26.43■■□□□ 1.82
PCDHA1Q9Y5I3 CHSY1-201ENST00000254190 4550 ntAPPRIS P1 TSL 1 (best) BASIC26.43■■□□□ 1.82
PCDHA1Q9Y5I3 HDHD5-203ENST00000399852 1118 ntTSL 3 BASIC26.43■■□□□ 1.82
PCDHA1Q9Y5I3 CHAC1-201ENST00000444189 1204 ntTSL 1 (best) BASIC26.43■■□□□ 1.82
PCDHA1Q9Y5I3 USP25-203ENST00000351097 2158 ntTSL 1 (best) BASIC26.42■■□□□ 1.82
PCDHA1Q9Y5I3 TNFRSF25-201ENST00000348333 1119 ntTSL 1 (best) BASIC26.42■■□□□ 1.82
PCDHA1Q9Y5I3 TNFRSF25-202ENST00000351748 705 ntTSL 1 (best) BASIC26.42■■□□□ 1.82
PCDHA1Q9Y5I3 KRAS-204ENST00000557334 1052 ntTSL 5 BASIC26.42■■□□□ 1.82
PCDHA1Q9Y5I3 ZDHHC20-203ENST00000400590 1869 ntAPPRIS ALT2 TSL 5 BASIC26.42■■□□□ 1.82
PCDHA1Q9Y5I3 TANGO2-207ENST00000420290 1859 ntTSL 2 BASIC26.42■■□□□ 1.82
PCDHA1Q9Y5I3 TAZ-205ENST00000475699 1862 ntTSL 1 (best) BASIC26.42■■□□□ 1.82
PCDHA1Q9Y5I3 SYNGR3-201ENST00000248121 2051 ntAPPRIS P1 TSL 1 (best) BASIC26.42■■□□□ 1.82
PCDHA1Q9Y5I3 AC005703.6-201ENST00000623265 1329 ntBASIC26.41■■□□□ 1.82
PCDHA1Q9Y5I3 CRYAA-201ENST00000291554 1139 ntAPPRIS P1 TSL 1 (best) BASIC26.41■■□□□ 1.82
PCDHA1Q9Y5I3 CA9-204ENST00000617161 1374 ntTSL 1 (best) BASIC26.41■■□□□ 1.82
PCDHA1Q9Y5I3 LINC02043-201ENST00000419745 1832 ntTSL 2 BASIC26.41■■□□□ 1.82
PCDHA1Q9Y5I3 NFKBIB-204ENST00000572515 1929 ntTSL 1 (best) BASIC26.41■■□□□ 1.82
PCDHA1Q9Y5I3 SUGCT-209ENST00000628514 1591 ntAPPRIS P4 TSL 1 (best) BASIC26.41■■□□□ 1.82
PCDHA1Q9Y5I3 CDIPT-207ENST00000566113 1671 ntTSL 2 BASIC26.41■■□□□ 1.82
PCDHA1Q9Y5I3 NELFB-201ENST00000343053 2698 ntAPPRIS ALT2 TSL 1 (best) BASIC26.41■■□□□ 1.82
PCDHA1Q9Y5I3 FAM173A-201ENST00000219535 806 ntAPPRIS ALT2 TSL 2 BASIC26.4■■□□□ 1.82
PCDHA1Q9Y5I3 CLTB-201ENST00000310418 1215 ntAPPRIS P4 TSL 1 (best) BASIC26.4■■□□□ 1.82
PCDHA1Q9Y5I3 CLTB-202ENST00000345807 1161 ntAPPRIS ALT1 TSL 1 (best) BASIC26.4■■□□□ 1.82
PCDHA1Q9Y5I3 TMEM147-203ENST00000392205 767 ntTSL 2 BASIC26.4■■□□□ 1.82
PCDHA1Q9Y5I3 PEMT-206ENST00000435340 960 ntTSL 5 BASIC26.4■■□□□ 1.82
PCDHA1Q9Y5I3 AL445237.1-202ENST00000604581 425 ntTSL 5 BASIC26.4■■□□□ 1.82
PCDHA1Q9Y5I3 FAM228B-208ENST00000613899 1238 ntAPPRIS ALT2 TSL 1 (best) BASIC26.4■■□□□ 1.82
PCDHA1Q9Y5I3 SIGMAR1-201ENST00000277010 1656 ntAPPRIS P1 TSL 1 (best) BASIC26.4■■□□□ 1.82
PCDHA1Q9Y5I3 AL161729.1-201ENST00000604104 1402 ntBASIC26.39■■□□□ 1.82
PCDHA1Q9Y5I3 FAHD1-203ENST00000427358 1974 ntAPPRIS P1 BASIC26.39■■□□□ 1.82
PCDHA1Q9Y5I3 SLBP-206ENST00000489418 1977 ntAPPRIS P2 TSL 1 (best) BASIC26.39■■□□□ 1.82
PCDHA1Q9Y5I3 EMC9-201ENST00000216799 835 ntAPPRIS P1 TSL 1 (best) BASIC26.39■■□□□ 1.82
PCDHA1Q9Y5I3 QDPR-206ENST00000508623 601 ntTSL 3 BASIC26.39■■□□□ 1.82
PCDHA1Q9Y5I3 MAZ-202ENST00000322945 2532 ntAPPRIS ALT2 TSL 1 (best) BASIC26.39■■□□□ 1.81
PCDHA1Q9Y5I3 CDH23-206ENST00000398842 1759 ntTSL 5 BASIC26.38■■□□□ 1.81
PCDHA1Q9Y5I3 FNDC4-201ENST00000264703 1657 ntAPPRIS P1 TSL 1 (best) BASIC26.38■■□□□ 1.81
PCDHA1Q9Y5I3 GPX4-213ENST00000622390 1002 ntTSL 5 BASIC26.38■■□□□ 1.81
PCDHA1Q9Y5I3 RASSF1-AS1-201ENST00000629828 790 ntBASIC26.38■■□□□ 1.81
PCDHA1Q9Y5I3 DAZAP1-205ENST00000587079 2086 ntAPPRIS ALT1 TSL 5 BASIC26.38■■□□□ 1.81
PCDHA1Q9Y5I3 ADSSL1-202ENST00000332972 1969 ntTSL 1 (best) BASIC26.38■■□□□ 1.81
PCDHA1Q9Y5I3 AC112229.4-201ENST00000488671 1528 ntTSL 2 BASIC26.38■■□□□ 1.81
PCDHA1Q9Y5I3 ZNF174-202ENST00000344823 1557 ntTSL 1 (best) BASIC26.37■■□□□ 1.81
Retrieved 100 of 98,524 protein–RNA pairs in 13.6 ms