Protein–RNA interactions for Protein: Q8IV63

VRK3, Inactive serine/threonine-protein kinase VRK3, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3Q8IV63 AL035685.1-201ENST00000636663 812 ntBASIC22.56■■□□□ 1.2
VRK3Q8IV63 ID2-201ENST00000234091 2041 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
VRK3Q8IV63 KLC3-202ENST00000470402 1820 ntTSL 1 (best) BASIC22.56■■□□□ 1.2
VRK3Q8IV63 PTPN2-202ENST00000327283 1706 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
VRK3Q8IV63 SHD-204ENST00000599689 1729 ntTSL 5 BASIC22.56■■□□□ 1.2
VRK3Q8IV63 AL022069.1-201ENST00000568025 1636 ntBASIC22.56■■□□□ 1.2
VRK3Q8IV63 TMEM256-PLSCR3-204ENST00000573331 2557 ntAPPRIS P5 TSL 2 BASIC22.55■■□□□ 1.2
VRK3Q8IV63 GATA4-207ENST00000532059 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC22.55■■□□□ 1.2
VRK3Q8IV63 NOX4-204ENST00000393282 560 ntTSL 1 (best) BASIC22.55■■□□□ 1.2
VRK3Q8IV63 AC239859.2-201ENST00000444165 318 ntBASIC22.55■■□□□ 1.2
VRK3Q8IV63 HOXC-AS1-201ENST00000505700 548 ntTSL 2 BASIC22.55■■□□□ 1.2
VRK3Q8IV63 KLHL26-202ENST00000595182 522 ntTSL 4 BASIC22.55■■□□□ 1.2
VRK3Q8IV63 HSD11B1L-206ENST00000423665 1525 ntAPPRIS ALT2 TSL 1 (best) BASIC22.55■■□□□ 1.2
VRK3Q8IV63 KCNQ3-202ENST00000519445 2801 ntAPPRIS ALT2 TSL 5 BASIC22.55■■□□□ 1.2
VRK3Q8IV63 ZDHHC1-201ENST00000348579 2047 ntAPPRIS P2 TSL 1 (best) BASIC22.55■■□□□ 1.2
VRK3Q8IV63 ZNF205-201ENST00000219091 1947 ntAPPRIS P1 TSL 5 BASIC22.55■■□□□ 1.2
VRK3Q8IV63 ABCB10P4-201ENST00000566803 2184 ntBASIC22.55■■□□□ 1.2
VRK3Q8IV63 EPM2A-209ENST00000638262 2679 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
VRK3Q8IV63 C5orf58-204ENST00000521850 2113 ntAPPRIS ALT2 TSL 1 (best) BASIC22.54■■□□□ 1.2
VRK3Q8IV63 TK2-202ENST00000417693 1046 ntTSL 2 BASIC22.54■■□□□ 1.2
VRK3Q8IV63 MCRIP1-202ENST00000457257 942 ntTSL 3 BASIC22.54■■□□□ 1.2
VRK3Q8IV63 LSM7-204ENST00000587502 575 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
VRK3Q8IV63 HSD11B2-201ENST00000326152 1900 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
VRK3Q8IV63 PCOLCE2-201ENST00000295992 2021 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
VRK3Q8IV63 HMX3-201ENST00000357878 1173 ntAPPRIS P1 TSL 2 BASIC22.53■■□□□ 1.2
VRK3Q8IV63 ZNF180-205ENST00000587047 525 ntTSL 4 BASIC22.53■■□□□ 1.2
VRK3Q8IV63 PRMT5-213ENST00000553897 1857 ntTSL 2 BASIC22.53■■□□□ 1.2
VRK3Q8IV63 IKBKG-211ENST00000615874 1460 ntTSL 5 BASIC22.53■■□□□ 1.2
VRK3Q8IV63 IKBKG-215ENST00000619941 1463 ntTSL 5 BASIC22.53■■□□□ 1.2
VRK3Q8IV63 B3GNT4-201ENST00000324189 1642 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
VRK3Q8IV63 ADSSL1-201ENST00000330877 1766 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
VRK3Q8IV63 PPP1R26-201ENST00000356818 4932 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
VRK3Q8IV63 RARA-204ENST00000394089 2024 ntAPPRIS P1 TSL 2 BASIC22.52■■□□□ 1.2
VRK3Q8IV63 Z92544.1-202ENST00000571933 1220 ntBASIC22.52■■□□□ 1.2
VRK3Q8IV63 GIT1-210ENST00000579937 2798 ntTSL 2 BASIC22.52■■□□□ 1.2
VRK3Q8IV63 HOMER2-201ENST00000304231 1990 ntAPPRIS P4 TSL 5 BASIC22.52■■□□□ 1.2
VRK3Q8IV63 CPLX1-203ENST00000505203 2011 ntTSL 2 BASIC22.52■■□□□ 1.19
VRK3Q8IV63 COMMD5-201ENST00000305103 1373 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
VRK3Q8IV63 IGFBP3-202ENST00000381083 1050 ntAPPRIS ALT1 TSL 5 BASIC22.51■■□□□ 1.19
VRK3Q8IV63 FAM173A-207ENST00000569529 1052 ntAPPRIS P3 TSL 1 (best) BASIC22.51■■□□□ 1.19
VRK3Q8IV63 NAGLU-201ENST00000225927 2544 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
VRK3Q8IV63 AUH-201ENST00000303617 1490 ntTSL 1 (best) BASIC22.5■■□□□ 1.19
VRK3Q8IV63 CENPX-202ENST00000392359 805 ntAPPRIS P1 TSL 2 BASIC22.5■■□□□ 1.19
VRK3Q8IV63 FAM72B-203ENST00000452190 748 ntTSL 3 BASIC22.5■■□□□ 1.19
VRK3Q8IV63 AC004448.1-201ENST00000458332 883 ntBASIC22.5■■□□□ 1.19
VRK3Q8IV63 SNX5-217ENST00000606557 1087 ntBASIC22.5■■□□□ 1.19
VRK3Q8IV63 AC119427.1-201ENST00000633182 556 ntTSL 4 BASIC22.5■■□□□ 1.19
VRK3Q8IV63 ARFIP2-202ENST00000396777 1868 ntAPPRIS P1 TSL 2 BASIC22.49■■□□□ 1.19
VRK3Q8IV63 FOSL1-202ENST00000448083 1427 ntTSL 2 BASIC22.49■■□□□ 1.19
VRK3Q8IV63 ACBD4-214ENST00000591859 1998 ntTSL 1 (best) BASIC22.49■■□□□ 1.19
VRK3Q8IV63 P4HA3-201ENST00000331597 2274 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
VRK3Q8IV63 MCUB-201ENST00000394650 2278 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
VRK3Q8IV63 STK32C-205ENST00000456004 607 ntTSL 2 BASIC22.49■■□□□ 1.19
VRK3Q8IV63 KRT125P-201ENST00000546827 989 ntBASIC22.49■■□□□ 1.19
VRK3Q8IV63 MIR4787-201ENST00000607364 84 ntBASIC22.49■■□□□ 1.19
VRK3Q8IV63 NR2F6-201ENST00000291442 2404 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
VRK3Q8IV63 KCNIP1-203ENST00000390656 2249 ntTSL 5 BASIC22.49■■□□□ 1.19
VRK3Q8IV63 SMARCB1-201ENST00000263121 1690 ntAPPRIS P3 TSL 1 (best) BASIC22.49■■□□□ 1.19
VRK3Q8IV63 CRLF1-201ENST00000392386 1792 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
VRK3Q8IV63 R3HDM4-201ENST00000361574 1815 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
VRK3Q8IV63 HMGA2-202ENST00000393577 611 ntTSL 3 BASIC22.48■■□□□ 1.19
VRK3Q8IV63 LSM8-203ENST00000422760 1920 ntTSL 1 (best) BASIC22.48■■□□□ 1.19
VRK3Q8IV63 ZKSCAN7-206ENST00000431636 1692 ntTSL 1 (best) BASIC22.48■■□□□ 1.19
VRK3Q8IV63 FAM107A-203ENST00000447756 1432 ntTSL 1 (best) BASIC22.48■■□□□ 1.19
VRK3Q8IV63 AL161729.1-201ENST00000604104 1402 ntBASIC22.48■■□□□ 1.19
VRK3Q8IV63 GNAS-201ENST00000265620 1866 ntAPPRIS P3 TSL 1 (best) BASIC22.47■■□□□ 1.19
VRK3Q8IV63 ID4-201ENST00000378700 2344 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
VRK3Q8IV63 MTNR1B-201ENST00000257068 1565 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
VRK3Q8IV63 RBFOX1-206ENST00000535565 1599 ntTSL 2 BASIC22.47■■□□□ 1.19
VRK3Q8IV63 OR2A1-AS1-204ENST00000470435 602 ntBASIC22.47■■□□□ 1.19
VRK3Q8IV63 EIF3J-203ENST00000535391 925 ntTSL 2 BASIC22.47■■□□□ 1.19
VRK3Q8IV63 AC138207.2-201ENST00000583377 492 ntTSL 2 BASIC22.47■■□□□ 1.19
VRK3Q8IV63 FAR2P4-203ENST00000560285 1739 ntTSL 2 BASIC22.47■■□□□ 1.19
VRK3Q8IV63 TRIOBP-203ENST00000403663 2324 ntAPPRIS ALT2 TSL 1 (best) BASIC22.47■■□□□ 1.19
VRK3Q8IV63 EVX1-201ENST00000222761 1500 ntTSL 1 (best) BASIC22.47■■□□□ 1.19
VRK3Q8IV63 THRA-202ENST00000394121 2260 ntTSL 2 BASIC22.46■■□□□ 1.19
VRK3Q8IV63 FZD9-201ENST00000344575 2338 ntAPPRIS P1 BASIC22.46■■□□□ 1.19
VRK3Q8IV63 FKBP8-209ENST00000597960 1781 ntAPPRIS P3 TSL 5 BASIC22.46■■□□□ 1.19
VRK3Q8IV63 PNMT-201ENST00000269582 1253 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
VRK3Q8IV63 SYCE1-204ENST00000432597 1254 ntAPPRIS ALT2 TSL 1 (best) BASIC22.46■■□□□ 1.19
VRK3Q8IV63 CLTA-204ENST00000433436 1235 ntAPPRIS ALT1 TSL 1 (best) BASIC22.46■■□□□ 1.19
VRK3Q8IV63 TIE1-210ENST00000538015 1140 ntTSL 1 (best) BASIC22.46■■□□□ 1.19
VRK3Q8IV63 CLTA-209ENST00000538225 1181 ntTSL 2 BASIC22.46■■□□□ 1.19
VRK3Q8IV63 CLTA-210ENST00000540080 989 ntTSL 2 BASIC22.46■■□□□ 1.19
VRK3Q8IV63 AC092028.1-203ENST00000608262 953 ntBASIC22.46■■□□□ 1.19
VRK3Q8IV63 RNF223-201ENST00000453464 1902 ntAPPRIS P1 TSL 2 BASIC22.46■■□□□ 1.19
VRK3Q8IV63 RUNDC3A-202ENST00000426726 2048 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
VRK3Q8IV63 HSPBP1-202ENST00000433386 1572 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
VRK3Q8IV63 SLC10A4-201ENST00000273861 1790 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.19
VRK3Q8IV63 RILP-201ENST00000301336 1771 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.19
VRK3Q8IV63 C6orf201-202ENST00000380175 1834 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.19
VRK3Q8IV63 PTX3-201ENST00000295927 1940 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
VRK3Q8IV63 FAM21EP-202ENST00000456967 2177 ntTSL 2 BASIC22.45■■□□□ 1.18
VRK3Q8IV63 KMT2E-AS1-201ENST00000453677 736 ntTSL 3 BASIC22.45■■□□□ 1.18
VRK3Q8IV63 MMP28-203ENST00000612672 1092 ntTSL 1 (best) BASIC22.45■■□□□ 1.18
VRK3Q8IV63 AC005551.1-201ENST00000641816 493 ntAPPRIS P1 BASIC22.45■■□□□ 1.18
VRK3Q8IV63 RPP38-201ENST00000378197 1457 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
VRK3Q8IV63 NAAA-204ENST00000507187 1750 ntTSL 1 (best) BASIC22.45■■□□□ 1.18
VRK3Q8IV63 C1QL2-201ENST00000272520 2043 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
VRK3Q8IV63 PTH1R-201ENST00000313049 2123 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
Retrieved 100 of 98,524 protein–RNA pairs in 48.8 ms