Protein–RNA interactions for Protein: O75940

SMNDC1, Survival of motor neuron-related-splicing factor 30, humanhuman

Known RBP eCLIP

Length 238 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMNDC1O75940 MIR943-201ENST00000401286 94 ntBASIC14.64□□□□□ -0.075e-7■■■■□ 24.5
SMNDC1O75940 FGFR1OP-207ENST00000622353 3451 ntTSL 2 BASIC13.51□□□□□ -0.255e-7■■■■□ 24.5
SMNDC1O75940 FGFR1OP-201ENST00000349556 1484 ntAPPRIS ALT2 TSL 1 (best) BASIC13.35□□□□□ -0.275e-7■■■■□ 24.5
SMNDC1O75940 PKD1-216ENST00000483731 4193 ntTSL 512.94□□□□□ -0.345e-7■■■■□ 24.5
SMNDC1O75940 FHOD1-201ENST00000258201 3990 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.345e-7■■■■□ 24.5
SMNDC1O75940 MICAL3-213ENST00000577821 807 ntTSL 312.83□□□□□ -0.367e-10■■■■□ 24.5
SMNDC1O75940 ANP32A-210ENST00000560303 724 ntAPPRIS ALT2 TSL 5 BASIC12.81□□□□□ -0.365e-7■■■■□ 24.5
SMNDC1O75940 MICAL3-217ENST00000580469 3622 ntTSL 412.21□□□□□ -0.467e-10■■■■□ 24.5
SMNDC1O75940 RPL15-205ENST00000415719 830 ntAPPRIS P1 TSL 5 BASIC12.05□□□□□ -0.485e-7■■■■□ 24.5
SMNDC1O75940 RPL15-208ENST00000435882 1063 ntAPPRIS P1 TSL 2 BASIC11.81□□□□□ -0.525e-7■■■■□ 24.5
SMNDC1O75940 MICAL3-218ENST00000584751 436 ntTSL 211.52□□□□□ -0.577e-10■■■■□ 24.5
SMNDC1O75940 AC016026.1-201ENST00000476405 4328 ntTSL 2 BASIC11.35□□□□□ -0.597e-10■■■■□ 24.5
SMNDC1O75940 MICAL3-216ENST00000579997 519 ntTSL 511.32□□□□□ -0.67e-10■■■■□ 24.5
SMNDC1O75940 RPL15-210ENST00000456530 2835 ntTSL 1 (best) BASIC10.9□□□□□ -0.665e-7■■■■□ 24.5
SMNDC1O75940 PKD1-203ENST00000423118 14135 ntAPPRIS ALT2 TSL 1 (best) BASIC10.9□□□□□ -0.665e-7■■■■□ 24.5
SMNDC1O75940 PKD1-201ENST00000262304 14138 ntAPPRIS P3 TSL 1 (best) BASIC10.89□□□□□ -0.675e-7■■■■□ 24.5
SMNDC1O75940 RPL15-202ENST00000354811 820 ntAPPRIS P1 TSL 1 (best) BASIC10.54□□□□□ -0.725e-7■■■■□ 24.5
SMNDC1O75940 RPL15-211ENST00000465786 1729 ntTSL 1 (best)10.27□□□□□ -0.765e-7■■■■□ 24.5
SMNDC1O75940 SMPD4P1-201ENST00000416717 2263 ntBASIC10.01□□□□□ -0.815e-7■■■■□ 24.5
SMNDC1O75940 RPL15-204ENST00000413699 2053 ntAPPRIS P1 TSL 2 BASIC9.86□□□□□ -0.835e-7■■■■□ 24.5
SMNDC1O75940 RPL15-203ENST00000412097 562 ntTSL 59.61□□□□□ -0.875e-7■■■■□ 24.5
SMNDC1O75940 RPL15-207ENST00000434031 650 ntTSL 58.89□□□□□ -0.995e-7■■■■□ 24.5
SMNDC1O75940 FGFR1OP-202ENST00000366847 14166 ntAPPRIS P4 TSL 1 (best) BASIC8.07□□□□□ -1.125e-7■■■■□ 24.5
SMNDC1O75940 RNF213-220ENST00000582970 21055 ntAPPRIS P2 TSL 1 (best) BASIC7.26□□□□□ -1.255e-7■■■■□ 24.5
SMNDC1O75940 RNF213-204ENST00000508628 17730 ntAPPRIS ALT2 TSL 5 BASIC5.85□□□□□ -1.475e-7■■■■□ 24.5
SMNDC1O75940 Z94721.2-201ENST00000609590 5310 ntTSL 2 BASIC5.32□□□□□ -1.565e-7■■■■□ 24.5
SMNDC1O75940 AC138696.1-201ENST00000522452 2897 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.932e-6■■■■□ 24.5
SMNDC1O75940 GLI4-204ENST00000517530 563 ntTSL 219.5■□□□□ 0.712e-6■■■■□ 24.5
SMNDC1O75940 GLI4-210ENST00000523522 1297 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.692e-6■■■■□ 24.5
SMNDC1O75940 GLI4-201ENST00000340042 1341 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.682e-6■■■■□ 24.5
SMNDC1O75940 GLI4-209ENST00000522479 435 ntTSL 319.02■□□□□ 0.642e-6■■■■□ 24.5
SMNDC1O75940 GLI4-207ENST00000521682 1082 ntTSL 3 BASIC15.59■□□□□ 0.092e-6■■■■□ 24.5
SMNDC1O75940 GLI4-203ENST00000517468 963 ntTSL 5 BASIC13.9□□□□□ -0.182e-6■■■■□ 24.5
SMNDC1O75940 TNPO2-203ENST00000450764 4993 ntAPPRIS ALT1 TSL 1 (best) BASIC18.55■□□□□ 0.561e-7■■■■□ 24.4
SMNDC1O75940 TNPO2-201ENST00000356861 4962 ntAPPRIS ALT1 TSL 1 (best) BASIC18.33■□□□□ 0.521e-7■■■■□ 24.4
SMNDC1O75940 TNPO2-202ENST00000425528 5122 ntAPPRIS P4 TSL 5 BASIC14.54□□□□□ -0.081e-7■■■■□ 24.4
SMNDC1O75940 TTYH3-201ENST00000258796 4840 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.841e-6■■■■□ 24.4
SMNDC1O75940 TTYH3-204ENST00000407643 4537 ntTSL 5 BASIC13.45□□□□□ -0.261e-6■■■■□ 24.4
SMNDC1O75940 ABHD16A-214ENST00000495769 1892 ntTSL 517.82■□□□□ 0.447e-7■■■■□ 24.4
SMNDC1O75940 ABHD16A-201ENST00000395952 2103 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.327e-7■■■■□ 24.4
SMNDC1O75940 AL662899.1-201ENST00000461287 2332 ntAPPRIS P1 TSL 2 BASIC16.22■□□□□ 0.197e-7■■■■□ 24.4
SMNDC1O75940 ABHD16A-208ENST00000477016 868 ntTSL 514.97□□□□□ -0.017e-7■■■■□ 24.4
SMNDC1O75940 ABHD16A-202ENST00000440843 1906 ntTSL 2 BASIC14.54□□□□□ -0.087e-7■■■■□ 24.4
SMNDC1O75940 ABHD16A-212ENST00000492084 2260 ntTSL 214.47□□□□□ -0.097e-7■■■■□ 24.4
SMNDC1O75940 ABHD16A-207ENST00000475742 1319 ntTSL 513.86□□□□□ -0.197e-7■■■■□ 24.4
SMNDC1O75940 ABHD16A-205ENST00000471644 746 ntTSL 39.79□□□□□ -0.847e-7■■■■□ 24.4
SMNDC1O75940 SNHG17-201ENST00000413755 648 ntTSL 3 BASIC12.94□□□□□ -0.345e-10■■■■□ 24.4
SMNDC1O75940 SNHG17-208ENST00000456953 546 ntTSL 3 BASIC11.95□□□□□ -0.55e-10■■■■□ 24.4
SMNDC1O75940 NOP56-201ENST00000329276 2400 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.961e-38■■■■□ 24.3
SMNDC1O75940 NOP56-220ENST00000616692 2662 ntTSL 1 (best)17.25■□□□□ 0.351e-38■■■■□ 24.3
SMNDC1O75940 NOP56-219ENST00000612233 2980 nt13.87□□□□□ -0.191e-38■■■■□ 24.3
SMNDC1O75940 NOP56-216ENST00000492135 1143 ntTSL 1 (best)12.74□□□□□ -0.371e-38■■■■□ 24.3
SMNDC1O75940 NOP56-206ENST00000466447 1094 ntTSL 210.74□□□□□ -0.691e-38■■■■□ 24.3
SMNDC1O75940 NOP56-202ENST00000415272 1628 ntTSL 510.32□□□□□ -0.761e-38■■■■□ 24.3
SMNDC1O75940 NOP56-215ENST00000490753 640 ntTSL 28.77□□□□□ -1.011e-38■■■■□ 24.3
SMNDC1O75940 NOP56-207ENST00000467196 1320 ntTSL 57.74□□□□□ -1.171e-38■■■■□ 24.3
SMNDC1O75940 NOP56-211ENST00000471023 592 ntTSL 27.54□□□□□ -1.21e-38■■■■□ 24.3
SMNDC1O75940 NOP56-212ENST00000480447 651 ntTSL 26.37□□□□□ -1.391e-38■■■■□ 24.3
SMNDC1O75940 ZFPM1-202ENST00000562417 497 ntTSL 315.66■□□□□ 0.12e-6■■■■□ 24.3
SMNDC1O75940 FANCA-223ENST00000567284 479 ntTSL 38.32□□□□□ -1.083e-7■■■■□ 24.3
SMNDC1O75940 HSPG2-203ENST00000374695 14327 ntAPPRIS P1 TSL 1 (best) BASIC8.54□□□□□ -1.041e-10■■■■□ 24.3
SMNDC1O75940 SEPT9-241ENST00000591934 553 ntTSL 415.54■□□□□ 0.081e-7■■■■□ 24.3
SMNDC1O75940 SEPT9-242ENST00000592098 503 ntTSL 411.93□□□□□ -0.51e-7■■■■□ 24.3
SMNDC1O75940 TIMELESS-205ENST00000557589 2784 ntTSL 210.47□□□□□ -0.731e-6■■■■□ 24.2
SMNDC1O75940 TIMELESS-203ENST00000553532 5121 ntAPPRIS P3 TSL 1 (best) BASIC10.21□□□□□ -0.771e-6■■■■□ 24.2
SMNDC1O75940 TIMELESS-201ENST00000229201 4376 ntAPPRIS ALT2 TSL 5 BASIC10.1□□□□□ -0.791e-6■■■■□ 24.2
SMNDC1O75940 RNU6ATAC2P-201ENST00000387943 126 ntBASIC1.61□□□□□ -2.151e-24■■■■□ 24.1
SMNDC1O75940 AGRN-205ENST00000469403 899 ntTSL 323.37■■□□□ 1.334e-7■■■■□ 24.1
SMNDC1O75940 AGRN-206ENST00000477585 707 ntTSL 321.72■■□□□ 1.074e-7■■■■□ 24.1
SMNDC1O75940 HSPA8-208ENST00000526686 740 ntTSL 1 (best)4.9□□□□□ -1.638e-75■■■■□ 24.1
SMNDC1O75940 CALR-202ENST00000586760 913 ntTSL 210.74□□□□□ -0.697e-13■■■■□ 24
SMNDC1O75940 ZC3H3-201ENST00000262577 3280 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.332e-6■■■■□ 24
SMNDC1O75940 RABGGTB-201ENST00000319942 1496 ntAPPRIS P1 TSL 1 (best) BASIC9.3□□□□□ -0.928e-15■■■■□ 24
SMNDC1O75940 RABGGTB-205ENST00000462042 569 ntTSL 39.19□□□□□ -0.948e-15■■■■□ 24
SMNDC1O75940 RABGGTB-209ENST00000473406 721 ntTSL 58.2□□□□□ -1.18e-15■■■■□ 24
SMNDC1O75940 RABGGTB-210ENST00000485459 788 ntTSL 58.09□□□□□ -1.118e-15■■■■□ 24
SMNDC1O75940 RABGGTB-212ENST00000491266 961 ntTSL 37.63□□□□□ -1.198e-15■■■■□ 24
SMNDC1O75940 RABGGTB-208ENST00000471759 2137 ntTSL 27.45□□□□□ -1.228e-15■■■■□ 24
SMNDC1O75940 RABGGTB-207ENST00000470201 848 ntTSL 37.04□□□□□ -1.288e-15■■■■□ 24
SMNDC1O75940 RABGGTB-202ENST00000370826 512 ntTSL 2 BASIC6.75□□□□□ -1.338e-15■■■■□ 24
SMNDC1O75940 RABGGTB-213ENST00000496055 3863 ntTSL 24.93□□□□□ -1.628e-15■■■■□ 24
SMNDC1O75940 MTA1-214ENST00000494026 852 ntTSL 516.14■□□□□ 0.173e-7■■■■□ 23.9
SMNDC1O75940 MTA1-216ENST00000498644 871 ntTSL 215.1■□□□□ 0.013e-7■■■■□ 23.9
SMNDC1O75940 TCIRG1-214ENST00000533005 1655 ntTSL 521.6■■□□□ 1.054e-10■■■■□ 23.8
SMNDC1O75940 TCIRG1-213ENST00000532635 2457 ntTSL 1 (best) BASIC21.19■□□□□ 0.984e-10■■■■□ 23.8
SMNDC1O75940 UNKL-205ENST00000397464 2180 ntTSL 2 BASIC21.1■□□□□ 0.971e-6■■■■□ 23.8
SMNDC1O75940 TCIRG1-203ENST00000524870 830 ntTSL 1 (best)19.33■□□□□ 0.684e-10■■■■□ 23.8
SMNDC1O75940 TCIRG1-201ENST00000265686 2677 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.634e-10■■■■□ 23.8
SMNDC1O75940 UNKL-204ENST00000389221 5116 ntAPPRIS ALT2 TSL 5 BASIC18.38■□□□□ 0.531e-6■■■■□ 23.8
SMNDC1O75940 TCIRG1-205ENST00000525724 1864 ntTSL 517.89■□□□□ 0.454e-10■■■■□ 23.8
SMNDC1O75940 UNKL-206ENST00000402641 669 ntTSL 316.68■□□□□ 0.261e-6■■■■□ 23.8
SMNDC1O75940 UNKL-201ENST00000248104 4320 ntTSL 1 (best) BASIC15.6■□□□□ 0.091e-6■■■■□ 23.8
SMNDC1O75940 AP1G2-201ENST00000308724 3298 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.021e-8■■■■□ 23.8
SMNDC1O75940 UNKL-207ENST00000403703 4281 ntTSL 1 (best)14.14□□□□□ -0.151e-6■■■■□ 23.8
SMNDC1O75940 AP1G2-204ENST00000465445 2554 ntTSL 514.07□□□□□ -0.161e-8■■■■□ 23.8
SMNDC1O75940 UNKL-214ENST00000515195 481 ntTSL 413.48□□□□□ -0.251e-6■■■■□ 23.8
SMNDC1O75940 AP1G2-203ENST00000460049 2672 ntTSL 1 (best)12.89□□□□□ -0.351e-8■■■■□ 23.8
SMNDC1O75940 ZWINT-203ENST00000373944 1872 ntAPPRIS P3 TSL 1 (best) BASIC12.79□□□□□ -0.364e-10■■■■□ 23.8
SMNDC1O75940 AP1G2-202ENST00000397120 2609 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.361e-8■■■■□ 23.8
SMNDC1O75940 UNKL-213ENST00000513783 582 ntTSL 412.77□□□□□ -0.371e-6■■■■□ 23.8
Retrieved 100 of 11,362 protein–RNA pairs in 144.4 ms