RNA–Protein interactions for RNA: ENST00000416717.6

SMPD4P1-201, Transcript of sphingomyelin phosphodiesterase 4 pseudogene 1, humanhuman

BASIC

Gene SMPD4P1, Length 2,263 nt, Biotype transcribed unprocessed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD4P1-201ENST00000416717 NISCHQ9Y2I1 1504 aa23.82■■□□□ 1.4
SMPD4P1-201ENST00000416717 CCDC180Q9P1Z9 1646 aa20.65■□□□□ 0.9
SMPD4P1-201ENST00000416717 ZCCHC6Q5VYS8 1495 aaKnown RBP20.01■□□□□ 0.79
SMPD4P1-201ENST00000416717 DCAF8L2P0C7V8 631 aa19.91■□□□□ 0.78
SMPD4P1-201ENST00000416717 SHROOM4Q9ULL8 1493 aa19.76■□□□□ 0.75
SMPD4P1-201ENST00000416717 ABCC9O60706 1549 aa19.63■□□□□ 0.73
SMPD4P1-201ENST00000416717 DCAF1Q9Y4B6 1507 aa19.56■□□□□ 0.72
SMPD4P1-201ENST00000416717 MYO15BQ96JP2 1530 aa19.26■□□□□ 0.67
SMPD4P1-201ENST00000416717 NACADO15069 1562 aa19.21■□□□□ 0.67
SMPD4P1-201ENST00000416717 SCRIBQ14160 1630 aa19.19■□□□□ 0.66
SMPD4P1-201ENST00000416717 RB1CC1Q8TDY2 1594 aa19.07■□□□□ 0.64
SMPD4P1-201ENST00000416717 SUPT5HO00267 1087 aaKnown RBP19.05■□□□□ 0.64
SMPD4P1-201ENST00000416717 UNC13AQ9UPW8 1703 aa18.8■□□□□ 0.6
SMPD4P1-201ENST00000416717 PABPN1Q86U42 306 aaKnown RBP eCLIP18.6■□□□□ 0.57
SMPD4P1-201ENST00000416717 CECR2Q9BXF3 1484 aa18.59■□□□□ 0.57
SMPD4P1-201ENST00000416717 RSF1Q96T23 1441 aaPredicted RBP18.55■□□□□ 0.56
SMPD4P1-201ENST00000416717 BICRAQ9NZM4 1560 aa18.53■□□□□ 0.56
SMPD4P1-201ENST00000416717 MROH2BQ7Z745 1585 aa18.47■□□□□ 0.55
SMPD4P1-201ENST00000416717 WIZO95785 1651 aa18.37■□□□□ 0.53
SMPD4P1-201ENST00000416717 BAZ1AQ9NRL2 1556 aaPredicted RBP18.37■□□□□ 0.53
SMPD4P1-201ENST00000416717 SMARCA4P51532 1647 aa18.31■□□□□ 0.52
SMPD4P1-201ENST00000416717 CHIC1Q5VXU3 224 aa18.18■□□□□ 0.5
SMPD4P1-201ENST00000416717 TOP2AP11388 1531 aaKnown RBP18.07■□□□□ 0.48
SMPD4P1-201ENST00000416717 PEG3Q9GZU2 1588 aa17.98■□□□□ 0.47
SMPD4P1-201ENST00000416717 ATAD2BQ9ULI0 1458 aa17.97■□□□□ 0.47
SMPD4P1-201ENST00000416717 EIF4G1Q04637 1599 aaKnown RBP17.97■□□□□ 0.47
SMPD4P1-201ENST00000416717 CCDC88BA6NC98 1476 aa17.94■□□□□ 0.46
SMPD4P1-201ENST00000416717 SMARCA2P51531 1590 aa17.94■□□□□ 0.46
SMPD4P1-201ENST00000416717 BAZ1BQ9UIG0 1483 aaKnown RBP17.9■□□□□ 0.46
SMPD4P1-201ENST00000416717 TRIM41Q8WV44 630 aa17.81■□□□□ 0.44
SMPD4P1-201ENST00000416717 NCAPD3P42695 1498 aa17.74■□□□□ 0.43
SMPD4P1-201ENST00000416717 HMGXB3Q12766 1538 aa17.72■□□□□ 0.43
SMPD4P1-201ENST00000416717 CC2D2AQ9P2K1 1620 aa17.71■□□□□ 0.43
SMPD4P1-201ENST00000416717 ABCC8Q09428 1581 aa17.69■□□□□ 0.42
SMPD4P1-201ENST00000416717 FAM9AQ8IZU1 332 aaPredicted RBP17.63■□□□□ 0.41
SMPD4P1-201ENST00000416717 LOC105371045A0A1W2PR82 267 aa17.61■□□□□ 0.41
SMPD4P1-201ENST00000416717 EHMT2Q96KQ7 1210 aa17.49■□□□□ 0.39
SMPD4P1-201ENST00000416717 WRNQ14191 1432 aaPredicted RBP eCLIP17.47■□□□□ 0.39
SMPD4P1-201ENST00000416717 SYNJ1O43426 1573 aa17.42■□□□□ 0.38
SMPD4P1-201ENST00000416717 CFTRP13569 1480 aa17.41■□□□□ 0.38
SMPD4P1-201ENST00000416717 DNAJC5BQ9UF47 199 aa17.37■□□□□ 0.37
SMPD4P1-201ENST00000416717 SOGA1O94964 1423 aa17.36■□□□□ 0.37
SMPD4P1-201ENST00000416717 PRDM2Q13029 1718 aa17.35■□□□□ 0.37
SMPD4P1-201ENST00000416717 CADPSQ9ULU8 1353 aa17.34■□□□□ 0.37
SMPD4P1-201ENST00000416717 RUSC2Q8N2Y8 1516 aa17.31■□□□□ 0.36
SMPD4P1-201ENST00000416717 TOP2BQ02880 1626 aa17.28■□□□□ 0.36
SMPD4P1-201ENST00000416717 NESP48681 1621 aa17.28■□□□□ 0.36
SMPD4P1-201ENST00000416717 BIVM-ERCC5R4GMW8 1640 aa17.25■□□□□ 0.35
SMPD4P1-201ENST00000416717 CUX1P39880 1505 aa17.25■□□□□ 0.35
SMPD4P1-201ENST00000416717 CSRNP3Q8WYN3 585 aa17.19■□□□□ 0.34
SMPD4P1-201ENST00000416717 FANCD2Q9BXW9 1451 aa17.19■□□□□ 0.34
SMPD4P1-201ENST00000416717 EEA1Q15075 1411 aa17.17■□□□□ 0.34
SMPD4P1-201ENST00000416717 LAMC3Q9Y6N6 1575 aa17.14■□□□□ 0.33
SMPD4P1-201ENST00000416717 UBTFP17480 764 aaKnown RBP17.08■□□□□ 0.32
SMPD4P1-201ENST00000416717 CEP164Q9UPV0 1460 aa17.06■□□□□ 0.32
SMPD4P1-201ENST00000416717 FGD5Q6ZNL6 1462 aa17.05■□□□□ 0.32
SMPD4P1-201ENST00000416717 KIF21AQ7Z4S6 1674 aa17.05■□□□□ 0.32
SMPD4P1-201ENST00000416717 GOLGA3Q08378 1498 aa17.02■□□□□ 0.32
SMPD4P1-201ENST00000416717 PDS5BQ9NTI5 1447 aa17.02■□□□□ 0.32
SMPD4P1-201ENST00000416717 DNMBPQ6XZF7 1577 aa17.01■□□□□ 0.31
SMPD4P1-201ENST00000416717 TOPBP1Q92547 1522 aa17.01■□□□□ 0.31
SMPD4P1-201ENST00000416717 KIF21BO75037 1637 aa17■□□□□ 0.31
SMPD4P1-201ENST00000416717 KIF27Q86VH2 1401 aa16.99■□□□□ 0.31
SMPD4P1-201ENST00000416717 CUX2O14529 1486 aa16.98■□□□□ 0.31
SMPD4P1-201ENST00000416717 URB2Q14146 1524 aaKnown RBP16.98■□□□□ 0.31
SMPD4P1-201ENST00000416717 RAPGEF2Q9Y4G8 1499 aa16.98■□□□□ 0.31
SMPD4P1-201ENST00000416717 TNIKQ9UKE5 1360 aa16.97■□□□□ 0.31
SMPD4P1-201ENST00000416717 CEP162Q5TB80 1403 aa16.96■□□□□ 0.31
SMPD4P1-201ENST00000416717 RAD54L2Q9Y4B4 1467 aa16.95■□□□□ 0.3
SMPD4P1-201ENST00000416717 POLA1P09884 1462 aaPredicted RBP16.94■□□□□ 0.3
SMPD4P1-201ENST00000416717 RANGAP1P46060 587 aaPredicted RBP16.92■□□□□ 0.3
SMPD4P1-201ENST00000416717 PCGF6Q9BYE7 350 aa16.92■□□□□ 0.3
SMPD4P1-201ENST00000416717 PRXQ9BXM0 1461 aa16.88■□□□□ 0.29
SMPD4P1-201ENST00000416717 PPARGC1BQ86YN6 1023 aaKnown RBP16.87■□□□□ 0.29
SMPD4P1-201ENST00000416717 IGF1RP08069 1367 aa16.85■□□□□ 0.29
SMPD4P1-201ENST00000416717 ERICH3Q5RHP9 1530 aa16.84■□□□□ 0.29
SMPD4P1-201ENST00000416717 ABCA10Q8WWZ4 1543 aa16.84■□□□□ 0.29
SMPD4P1-201ENST00000416717 MRC2Q9UBG0 1479 aa16.81■□□□□ 0.28
SMPD4P1-201ENST00000416717 CLIP1P30622 1438 aa16.8■□□□□ 0.28
SMPD4P1-201ENST00000416717 ERCC6Q03468 1493 aa16.8■□□□□ 0.28
SMPD4P1-201ENST00000416717 WDR97A6NE52 1622 aa16.79■□□□□ 0.28
SMPD4P1-201ENST00000416717 TDRD9Q8NDG6 1382 aaKnown RBP16.79■□□□□ 0.28
SMPD4P1-201ENST00000416717 CARMIL1Q5VZK9 1371 aa16.78■□□□□ 0.28
SMPD4P1-201ENST00000416717 TRIM26Q12899 539 aaPredicted RBP16.76■□□□□ 0.27
SMPD4P1-201ENST00000416717 TTBK1Q5TCY1 1321 aaPredicted RBP16.75■□□□□ 0.27
SMPD4P1-201ENST00000416717 TARBP1Q13395 1621 aaKnown RBP16.73■□□□□ 0.27
SMPD4P1-201ENST00000416717 ABCA5Q8WWZ7 1642 aa16.71■□□□□ 0.27
SMPD4P1-201ENST00000416717 GAPVD1Q14C86 1478 aa16.7■□□□□ 0.26
SMPD4P1-201ENST00000416717 WDR62O43379 1518 aa16.69■□□□□ 0.26
SMPD4P1-201ENST00000416717 CUL7Q14999 1698 aa16.67■□□□□ 0.26
SMPD4P1-201ENST00000416717 AQRO60306 1485 aaKnown RBP eCLIP16.65■□□□□ 0.26
SMPD4P1-201ENST00000416717 THOC2Q8NI27 1593 aaKnown RBP16.65■□□□□ 0.26
SMPD4P1-201ENST00000416717 VPS8Q8N3P4 1428 aa16.63■□□□□ 0.25
SMPD4P1-201ENST00000416717 PBRM1Q86U86 1689 aa16.62■□□□□ 0.25
SMPD4P1-201ENST00000416717 ZNF608Q9ULD9 1512 aaPredicted RBP16.62■□□□□ 0.25
SMPD4P1-201ENST00000416717 ARAP1Q96P48 1450 aa16.61■□□□□ 0.25
SMPD4P1-201ENST00000416717 IFT140Q96RY7 1462 aa16.6■□□□□ 0.25
SMPD4P1-201ENST00000416717 ARHGAP35Q9NRY4 1499 aa16.58■□□□□ 0.25
SMPD4P1-201ENST00000416717 CTTNBP2Q8WZ74 1663 aa16.56■□□□□ 0.24
SMPD4P1-201ENST00000416717 APLP2Q06481 763 aa16.55■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 45.9 ms