RNA–Protein interactions for RNA: ENST00000374695.7

HSPG2-203, Transcript of heparan sulfate proteoglycan 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HSPG2, Length 14,327 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HSPG2-203ENST00000374695 MYT1Q01538 1121 aa13.94□□□□□ -0.18
HSPG2-203ENST00000374695 PELP1Q8IZL8 1130 aaKnown RBP13.83□□□□□ -0.19
HSPG2-203ENST00000374695 DCAF8L2P0C7V8 631 aa13.5□□□□□ -0.25
HSPG2-203ENST00000374695 CCER1Q8TC90 406 aaPredicted RBP13.14□□□□□ -0.31
HSPG2-203ENST00000374695 ERICH6Q7L0X2 663 aa13.06□□□□□ -0.32
HSPG2-203ENST00000374695 APLP2Q06481 763 aa12.96□□□□□ -0.34
HSPG2-203ENST00000374695 SUPT5HO00267 1087 aaKnown RBP12.94□□□□□ -0.34
HSPG2-203ENST00000374695 CENPBP07199 599 aaPredicted RBP12.91□□□□□ -0.34
HSPG2-203ENST00000374695 TTBK1Q5TCY1 1321 aaPredicted RBP12.9□□□□□ -0.34
HSPG2-203ENST00000374695 FAM9AQ8IZU1 332 aaPredicted RBP12.87□□□□□ -0.35
HSPG2-203ENST00000374695 ZEB1P37275 1124 aaPredicted RBP12.77□□□□□ -0.37
HSPG2-203ENST00000374695 YTHDC1Q96MU7 727 aaKnown RBP12.7□□□□□ -0.38
HSPG2-203ENST00000374695 NEFLP07196 543 aa12.68□□□□□ -0.38
HSPG2-203ENST00000374695 NISCHQ9Y2I1 1504 aa12.67□□□□□ -0.38
HSPG2-203ENST00000374695 SHROOM4Q9ULL8 1493 aa12.56□□□□□ -0.4
HSPG2-203ENST00000374695 EHMT2Q96KQ7 1210 aa12.54□□□□□ -0.4
HSPG2-203ENST00000374695 DAXXQ9UER7 740 aaPredicted RBP12.48□□□□□ -0.41
HSPG2-203ENST00000374695 PCGF6Q9BYE7 350 aa12.46□□□□□ -0.41
HSPG2-203ENST00000374695 RTL5Q5HYW3 569 aaPredicted RBP12.21□□□□□ -0.45
HSPG2-203ENST00000374695 ZNF316A6NFI3 1004 aaPredicted RBP12.16□□□□□ -0.46
HSPG2-203ENST00000374695 TRIM41Q8WV44 630 aa12.13□□□□□ -0.47
HSPG2-203ENST00000374695 ATP1B4Q9UN42 357 aaPredicted RBP12.13□□□□□ -0.47
HSPG2-203ENST00000374695 UBTFP17480 764 aaKnown RBP12.1□□□□□ -0.47
HSPG2-203ENST00000374695 RANGAP1P46060 587 aaPredicted RBP12.05□□□□□ -0.48
HSPG2-203ENST00000374695 HRCP23327 699 aa12.02□□□□□ -0.48
HSPG2-203ENST00000374695 MYT1LQ9UL68 1186 aa12□□□□□ -0.49
HSPG2-203ENST00000374695 TRIM26Q12899 539 aaPredicted RBP11.99□□□□□ -0.49
HSPG2-203ENST00000374695 CLSPNQ9HAW4 1339 aa11.94□□□□□ -0.5
HSPG2-203ENST00000374695 POLR3GLQ9BT43 218 aa11.83□□□□□ -0.52
HSPG2-203ENST00000374695 GLIPR1L2Q4G1C9 344 aa11.8□□□□□ -0.52
HSPG2-203ENST00000374695 ZBTB47Q9UFB7 747 aaPredicted RBP11.78□□□□□ -0.52
HSPG2-203ENST00000374695 CDK11AQ9UQ88 783 aaPredicted RBP11.74□□□□□ -0.53
HSPG2-203ENST00000374695 SLC4A1APQ9BWU0 796 aaKnown RBP11.72□□□□□ -0.53
HSPG2-203ENST00000374695 ANP32BQ92688 251 aaKnown RBP11.71□□□□□ -0.54
HSPG2-203ENST00000374695 DIEXFQ68CQ4 756 aaKnown RBP11.7□□□□□ -0.54
HSPG2-203ENST00000374695 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP11.68□□□□□ -0.54
HSPG2-203ENST00000374695 HNRNPUL2Q1KMD3 747 aaKnown RBP11.68□□□□□ -0.54
HSPG2-203ENST00000374695 ITGAEP38570 1179 aa11.66□□□□□ -0.54
HSPG2-203ENST00000374695 ANP32AP39687 249 aaKnown RBP11.65□□□□□ -0.55
HSPG2-203ENST00000374695 ANP32CO43423 234 aa11.6□□□□□ -0.55
HSPG2-203ENST00000374695 PPARGC1BQ86YN6 1023 aaKnown RBP11.6□□□□□ -0.55
HSPG2-203ENST00000374695 CANXP27824 592 aaKnown RBP11.59□□□□□ -0.55
HSPG2-203ENST00000374695 NEFMP07197 916 aa11.57□□□□□ -0.56
HSPG2-203ENST00000374695 CNGB1Q14028 1251 aaPredicted RBP11.53□□□□□ -0.56
HSPG2-203ENST00000374695 HSP90AA1P07900 732 aaKnown RBP11.48□□□□□ -0.57
HSPG2-203ENST00000374695 EIF5BO60841 1220 aaKnown RBP11.48□□□□□ -0.57
HSPG2-203ENST00000374695 GTF3C3Q9Y5Q9 886 aa11.47□□□□□ -0.57
HSPG2-203ENST00000374695 UPF2Q9HAU5 1272 aaKnown RBP11.47□□□□□ -0.57
HSPG2-203ENST00000374695 CHIC1Q5VXU3 224 aa11.46□□□□□ -0.57
HSPG2-203ENST00000374695 BCANQ96GW7 911 aa11.44□□□□□ -0.58
HSPG2-203ENST00000374695 ACIN1Q9UKV3 1341 aaKnown RBP11.43□□□□□ -0.58
HSPG2-203ENST00000374695 FAM50AQ14320 339 aaKnown RBP11.42□□□□□ -0.58
HSPG2-203ENST00000374695 TRIM52Q96A61 297 aa11.4□□□□□ -0.58
HSPG2-203ENST00000374695 SLC24A1O60721 1099 aa11.36□□□□□ -0.59
HSPG2-203ENST00000374695 TNNT2P45379 298 aaPredicted RBP11.34□□□□□ -0.59
HSPG2-203ENST00000374695 NEUROD1Q13562 356 aa11.34□□□□□ -0.59
HSPG2-203ENST00000374695 CDK11BP21127 795 aaKnown RBP11.32□□□□□ -0.6
HSPG2-203ENST00000374695 ANP32EQ9BTT0 268 aa11.31□□□□□ -0.6
HSPG2-203ENST00000374695 NPM2Q86SE8 214 aaKnown RBP11.31□□□□□ -0.6
HSPG2-203ENST00000374695 LOC105371045A0A1W2PR82 267 aa11.29□□□□□ -0.6
HSPG2-203ENST00000374695 ZNF326Q5BKZ1 582 aaKnown RBP11.28□□□□□ -0.6
HSPG2-203ENST00000374695 NCLP19338 710 aaKnown RBP11.27□□□□□ -0.61
HSPG2-203ENST00000374695 GOLGA6L2Q8N9W4 650 aaPredicted RBP11.25□□□□□ -0.61
HSPG2-203ENST00000374695 BCL11AQ9H165 835 aa11.24□□□□□ -0.61
HSPG2-203ENST00000374695 DDRGK1Q96HY6 314 aa11.19□□□□□ -0.62
HSPG2-203ENST00000374695 BECN1Q14457 450 aa11.19□□□□□ -0.62
HSPG2-203ENST00000374695 TRIM44Q96DX7 344 aaPredicted RBP11.18□□□□□ -0.62
HSPG2-203ENST00000374695 MYH16Q9H6N6 1097 aa11.17□□□□□ -0.62
HSPG2-203ENST00000374695 GOLGA6L22H0YM25 854 aa11.17□□□□□ -0.62
HSPG2-203ENST00000374695 TONSLQ96HA7 1378 aa11.15□□□□□ -0.63
HSPG2-203ENST00000374695 CCDC136Q96JN2 1154 aa11.15□□□□□ -0.63
HSPG2-203ENST00000374695 NBR1Q14596 966 aa11.13□□□□□ -0.63
HSPG2-203ENST00000374695 FKBP8Q14318 412 aa11.12□□□□□ -0.63
HSPG2-203ENST00000374695 ERICH6BQ5W0A0 696 aa11.1□□□□□ -0.63
HSPG2-203ENST00000374695 HNRNPUQ00839 825 aaKnown RBP eCLIP11.08□□□□□ -0.64
HSPG2-203ENST00000374695 ZRSR1Q15695 479 aaKnown RBP11.07□□□□□ -0.64
HSPG2-203ENST00000374695 DCAF1Q9Y4B6 1507 aa11.06□□□□□ -0.64
HSPG2-203ENST00000374695 ESF1Q9H501 851 aaKnown RBP11.06□□□□□ -0.64
HSPG2-203ENST00000374695 GOLGA6L6A8MZA4 724 aa11.05□□□□□ -0.64
HSPG2-203ENST00000374695 WDR43Q15061 677 aaKnown RBP eCLIP11.04□□□□□ -0.647e-6■□□□□ 9.7
HSPG2-203ENST00000374695 PTMAP06454 111 aaKnown RBP11.04□□□□□ -0.64
HSPG2-203ENST00000374695 CASC1Q6TDU7 716 aa11.03□□□□□ -0.64
HSPG2-203ENST00000374695 ARXQ96QS3 562 aa11.03□□□□□ -0.64
HSPG2-203ENST00000374695 NRDCO43847 1150 aa11.03□□□□□ -0.64
HSPG2-203ENST00000374695 CCDC180Q9P1Z9 1646 aa11.02□□□□□ -0.64
HSPG2-203ENST00000374695 TMC1Q8TDI8 760 aa11.01□□□□□ -0.65
HSPG2-203ENST00000374695 DNTTIP2Q5QJE6 756 aaKnown RBP11□□□□□ -0.65
HSPG2-203ENST00000374695 CHAF1AQ13111 956 aaPredicted RBP10.99□□□□□ -0.65
HSPG2-203ENST00000374695 STAG3Q9UJ98 1225 aa10.98□□□□□ -0.65
HSPG2-203ENST00000374695 FAM9BQ8IZU0 186 aa10.97□□□□□ -0.65
HSPG2-203ENST00000374695 PPM1GO15355 546 aaPredicted RBP10.97□□□□□ -0.65
HSPG2-203ENST00000374695 SCAF1Q9H7N4 1312 aaKnown RBP10.96□□□□□ -0.65
HSPG2-203ENST00000374695 L1TD1Q5T7N2 865 aaKnown RBP10.95□□□□□ -0.66
HSPG2-203ENST00000374695 NAP1L5Q96NT1 182 aaPredicted RBP10.94□□□□□ -0.66
HSPG2-203ENST00000374695 ARID4BQ4LE39 1312 aaPredicted RBP10.91□□□□□ -0.66
HSPG2-203ENST00000374695 MRS2Q9HD23 443 aa10.91□□□□□ -0.66
HSPG2-203ENST00000374695 CHMP4BQ9H444 224 aaKnown RBP10.9□□□□□ -0.66
HSPG2-203ENST00000374695 ZNF777Q9ULD5 760 aaPredicted RBP10.89□□□□□ -0.67
HSPG2-203ENST00000374695 FBLN2P98095 1184 aa10.89□□□□□ -0.67
HSPG2-203ENST00000374695 DDX10Q13206 875 aaKnown RBP10.87□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 9.3 ms