Protein–RNA interactions for Protein: A6NHR9

SMCHD1, Structural maintenance of chromosomes flexible hinge domain-containing protein 1, humanhuman

Predictions only

Length 2,005 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1A6NHR9 OTUD5-202ENST00000376488 2692 ntAPPRIS ALT1 TSL 1 (best) BASIC26.55■■□□□ 1.84
SMCHD1A6NHR9 NKX6-3-201ENST00000518699 1352 ntAPPRIS P1 TSL 5 BASIC26.55■■□□□ 1.84
SMCHD1A6NHR9 RARRES2P6-201ENST00000567333 442 ntBASIC26.55■■□□□ 1.84
SMCHD1A6NHR9 MIR6722-201ENST00000617286 78 ntBASIC26.55■■□□□ 1.84
SMCHD1A6NHR9 MFSD7-202ENST00000347950 1599 ntTSL 2 BASIC26.55■■□□□ 1.84
SMCHD1A6NHR9 C1orf35-201ENST00000272139 1427 ntAPPRIS P1 TSL 1 (best) BASIC26.55■■□□□ 1.84
SMCHD1A6NHR9 AC004448.1-201ENST00000458332 883 ntBASIC26.55■■□□□ 1.84
SMCHD1A6NHR9 AP2M1-202ENST00000382456 2091 ntAPPRIS ALT1 TSL 1 (best) BASIC26.54■■□□□ 1.84
SMCHD1A6NHR9 RING1-201ENST00000374656 1752 ntAPPRIS P1 TSL 1 (best) BASIC26.54■■□□□ 1.84
SMCHD1A6NHR9 FAM118A-205ENST00000441876 1776 ntAPPRIS P1 TSL 1 (best) BASIC26.54■■□□□ 1.84
SMCHD1A6NHR9 MBD3-202ENST00000434436 2439 ntAPPRIS P1 TSL 1 (best) BASIC26.54■■□□□ 1.84
SMCHD1A6NHR9 SHISA9-205ENST00000639941 1135 ntAPPRIS ALT2 TSL 5 BASIC26.54■■□□□ 1.84
SMCHD1A6NHR9 FAR2P4-203ENST00000560285 1739 ntTSL 2 BASIC26.54■■□□□ 1.84
SMCHD1A6NHR9 KREMEN2-205ENST00000575769 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC26.53■■□□□ 1.84
SMCHD1A6NHR9 MRPL10-202ENST00000351111 1725 ntAPPRIS P1 TSL 1 (best) BASIC26.53■■□□□ 1.84
SMCHD1A6NHR9 SNX5-201ENST00000377759 2270 ntAPPRIS P1 TSL 1 (best) BASIC26.53■■□□□ 1.84
SMCHD1A6NHR9 UBTD1-201ENST00000370664 1706 ntAPPRIS P1 TSL 1 (best) BASIC26.53■■□□□ 1.84
SMCHD1A6NHR9 KRTAP5-4-201ENST00000399682 1181 ntAPPRIS P5 BASIC26.53■■□□□ 1.84
SMCHD1A6NHR9 AC026271.2-201ENST00000428091 497 ntBASIC26.53■■□□□ 1.84
SMCHD1A6NHR9 CREM-210ENST00000374721 2020 ntTSL 5 BASIC26.52■■□□□ 1.84
SMCHD1A6NHR9 AC004691.2-201ENST00000509504 1531 ntAPPRIS P1 TSL 5 BASIC26.52■■□□□ 1.84
SMCHD1A6NHR9 SCTR-201ENST00000019103 1865 ntAPPRIS P1 TSL 1 (best) BASIC26.52■■□□□ 1.84
SMCHD1A6NHR9 AC012123.1-201ENST00000426194 1661 ntTSL 5 BASIC26.52■■□□□ 1.84
SMCHD1A6NHR9 TRIM54-201ENST00000296098 2027 ntTSL 1 (best) BASIC26.52■■□□□ 1.84
SMCHD1A6NHR9 ZNF837-201ENST00000427624 2038 ntAPPRIS P1 TSL 1 (best) BASIC26.52■■□□□ 1.84
SMCHD1A6NHR9 POU2F2-208ENST00000529952 1716 ntAPPRIS ALT2 TSL 1 (best) BASIC26.52■■□□□ 1.84
SMCHD1A6NHR9 KCNG1-201ENST00000371571 2211 ntAPPRIS P1 TSL 1 (best) BASIC26.52■■□□□ 1.84
SMCHD1A6NHR9 SPAG16-201ENST00000272898 1059 ntTSL 5 BASIC26.51■■□□□ 1.83
SMCHD1A6NHR9 GSX2-205ENST00000611459 1262 ntAPPRIS P1 TSL 1 (best) BASIC26.51■■□□□ 1.83
SMCHD1A6NHR9 SLC15A3-201ENST00000227880 2115 ntAPPRIS P1 TSL 1 (best) BASIC26.51■■□□□ 1.83
SMCHD1A6NHR9 P2RX2-202ENST00000348800 1222 ntAPPRIS ALT2 TSL 1 (best) BASIC26.51■■□□□ 1.83
SMCHD1A6NHR9 P2RX2-204ENST00000351222 1140 ntTSL 1 (best) BASIC26.51■■□□□ 1.83
SMCHD1A6NHR9 P2RX2-207ENST00000449132 1113 ntTSL 1 (best) BASIC26.51■■□□□ 1.83
SMCHD1A6NHR9 AL359317.1-201ENST00000556316 578 ntTSL 4 BASIC26.51■■□□□ 1.83
SMCHD1A6NHR9 TMEM80-207ENST00000608174 800 ntTSL 5 BASIC26.51■■□□□ 1.83
SMCHD1A6NHR9 PFKFB4-204ENST00000416568 1575 ntTSL 1 (best) BASIC26.5■■□□□ 1.83
SMCHD1A6NHR9 SLC22A18-201ENST00000312221 1628 ntAPPRIS P1 TSL 1 (best) BASIC26.5■■□□□ 1.83
SMCHD1A6NHR9 ZDHHC20-203ENST00000400590 1869 ntAPPRIS ALT2 TSL 5 BASIC26.5■■□□□ 1.83
SMCHD1A6NHR9 C8orf58-201ENST00000289989 2016 ntAPPRIS P3 TSL 5 BASIC26.5■■□□□ 1.83
SMCHD1A6NHR9 YTHDF1-201ENST00000370334 747 ntTSL 3 BASIC26.49■■□□□ 1.83
SMCHD1A6NHR9 CAMK1-201ENST00000256460 1488 ntAPPRIS P1 TSL 1 (best) BASIC26.49■■□□□ 1.83
SMCHD1A6NHR9 OSCAR-205ENST00000359649 1892 ntAPPRIS P4 TSL 2 BASIC26.49■■□□□ 1.83
SMCHD1A6NHR9 ANKRD53-201ENST00000272421 2185 ntAPPRIS P3 TSL 1 (best) BASIC26.49■■□□□ 1.83
SMCHD1A6NHR9 REST-212ENST00000640343 1352 ntTSL 1 (best) BASIC26.49■■□□□ 1.83
SMCHD1A6NHR9 HIST1H2AL-201ENST00000613174 393 ntAPPRIS P1 BASIC26.49■■□□□ 1.83
SMCHD1A6NHR9 ZKSCAN7-206ENST00000431636 1692 ntTSL 1 (best) BASIC26.48■■□□□ 1.83
SMCHD1A6NHR9 HSF4-225ENST00000584272 1549 ntTSL 1 (best) BASIC26.48■■□□□ 1.83
SMCHD1A6NHR9 EBPL-204ENST00000378272 766 ntTSL 3 BASIC26.48■■□□□ 1.83
SMCHD1A6NHR9 AL031432.3-201ENST00000607698 485 ntBASIC26.48■■□□□ 1.83
SMCHD1A6NHR9 CDK9-201ENST00000373264 2463 ntAPPRIS P1 TSL 1 (best) BASIC26.48■■□□□ 1.83
SMCHD1A6NHR9 DNAJB11-201ENST00000265028 1688 ntAPPRIS P1 TSL 1 (best) BASIC26.48■■□□□ 1.83
SMCHD1A6NHR9 RPP38-207ENST00000616640 1537 ntAPPRIS P1 TSL 2 BASIC26.48■■□□□ 1.83
SMCHD1A6NHR9 SRPK3-205ENST00000393786 1900 ntAPPRIS ALT2 TSL 1 (best) BASIC26.48■■□□□ 1.83
SMCHD1A6NHR9 MIR17HG-201ENST00000400282 931 ntTSL 1 (best) BASIC26.48■■□□□ 1.83
SMCHD1A6NHR9 CREB3L3-205ENST00000602257 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC26.47■■□□□ 1.83
SMCHD1A6NHR9 ATP13A2-215ENST00000617114 1723 ntTSL 5 BASIC26.47■■□□□ 1.83
SMCHD1A6NHR9 ANO8-204ENST00000630631 1905 ntTSL 5 BASIC26.47■■□□□ 1.83
SMCHD1A6NHR9 PKDCC-201ENST00000294964 2502 ntAPPRIS P1 TSL 1 (best) BASIC26.47■■□□□ 1.83
SMCHD1A6NHR9 CPSF4-204ENST00000436336 1738 ntAPPRIS ALT1 TSL 1 (best) BASIC26.47■■□□□ 1.83
SMCHD1A6NHR9 KRT72-201ENST00000293745 2015 ntAPPRIS P1 TSL 1 (best) BASIC26.47■■□□□ 1.83
SMCHD1A6NHR9 CAPZB-203ENST00000375142 1686 ntAPPRIS ALT1 TSL 5 BASIC26.47■■□□□ 1.83
SMCHD1A6NHR9 AC020928.2-201ENST00000588717 2197 ntBASIC26.46■■□□□ 1.83
SMCHD1A6NHR9 PTOV1-201ENST00000391842 1875 ntAPPRIS P1 TSL 5 BASIC26.46■■□□□ 1.83
SMCHD1A6NHR9 CLPSL2-201ENST00000360454 488 ntAPPRIS ALT2 TSL 1 (best) BASIC26.46■■□□□ 1.83
SMCHD1A6NHR9 SMARCA5-AS1-201ENST00000500800 945 ntTSL 1 (best) BASIC26.46■■□□□ 1.83
SMCHD1A6NHR9 NRL-205ENST00000560550 788 ntTSL 1 (best) BASIC26.46■■□□□ 1.83
SMCHD1A6NHR9 GFRA4-201ENST00000290417 1427 ntAPPRIS ALT2 TSL 1 (best) BASIC26.46■■□□□ 1.83
SMCHD1A6NHR9 ATG16L2-201ENST00000321297 2243 ntAPPRIS P1 TSL 1 (best) BASIC26.46■■□□□ 1.83
SMCHD1A6NHR9 BIN1-206ENST00000352848 2209 ntTSL 1 (best) BASIC26.46■■□□□ 1.83
SMCHD1A6NHR9 MRPL41-201ENST00000371443 1262 ntAPPRIS P1 TSL 1 (best) BASIC26.46■■□□□ 1.83
SMCHD1A6NHR9 HOMER3-205ENST00000542541 1607 ntAPPRIS P3 TSL 1 (best) BASIC26.45■■□□□ 1.83
SMCHD1A6NHR9 CD37-213ENST00000598095 1598 ntTSL 2 BASIC26.45■■□□□ 1.83
SMCHD1A6NHR9 FOXB2-201ENST00000376708 1299 ntAPPRIS P1 BASIC26.45■■□□□ 1.82
SMCHD1A6NHR9 AC009097.2-201ENST00000562763 465 ntTSL 2 BASIC26.45■■□□□ 1.82
SMCHD1A6NHR9 RPRD1A-207ENST00000588737 1264 ntTSL 2 BASIC26.45■■□□□ 1.82
SMCHD1A6NHR9 SDF4-202ENST00000360001 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC26.45■■□□□ 1.82
SMCHD1A6NHR9 TMEM185A-207ENST00000600449 2840 ntAPPRIS P1 TSL 1 (best) BASIC26.45■■□□□ 1.82
SMCHD1A6NHR9 SHF-207ENST00000560540 2062 ntTSL 5 BASIC26.45■■□□□ 1.82
SMCHD1A6NHR9 EVX1-201ENST00000222761 1500 ntTSL 1 (best) BASIC26.45■■□□□ 1.82
SMCHD1A6NHR9 RAB33A-201ENST00000257017 1258 ntAPPRIS P1 TSL 1 (best) BASIC26.44■■□□□ 1.82
SMCHD1A6NHR9 CRYAA-201ENST00000291554 1139 ntAPPRIS P1 TSL 1 (best) BASIC26.44■■□□□ 1.82
SMCHD1A6NHR9 HDGFL2-210ENST00000621835 2255 ntAPPRIS ALT2 TSL 1 (best) BASIC26.44■■□□□ 1.82
SMCHD1A6NHR9 SNCB-201ENST00000310112 1383 ntAPPRIS P1 TSL 1 (best) BASIC26.44■■□□□ 1.82
SMCHD1A6NHR9 RFC2-201ENST00000055077 1695 ntAPPRIS P1 TSL 1 (best) BASIC26.44■■□□□ 1.82
SMCHD1A6NHR9 EEF1D-201ENST00000317198 1458 ntAPPRIS ALT2 TSL 5 BASIC26.44■■□□□ 1.82
SMCHD1A6NHR9 SLC52A2-202ENST00000402965 1777 ntAPPRIS P1 TSL 2 BASIC26.44■■□□□ 1.82
SMCHD1A6NHR9 CDIPT-207ENST00000566113 1671 ntTSL 2 BASIC26.44■■□□□ 1.82
SMCHD1A6NHR9 SNTA1-201ENST00000217381 2342 ntAPPRIS P1 TSL 1 (best) BASIC26.43■■□□□ 1.82
SMCHD1A6NHR9 TNIP2-206ENST00000510267 2006 ntAPPRIS ALT2 TSL 2 BASIC26.43■■□□□ 1.82
SMCHD1A6NHR9 AP006621.1-201ENST00000532946 536 ntTSL 5 BASIC26.43■■□□□ 1.82
SMCHD1A6NHR9 CAPNS1-205ENST00000588780 1035 ntAPPRIS ALT2 TSL 5 BASIC26.43■■□□□ 1.82
SMCHD1A6NHR9 MATK-202ENST00000395040 1907 ntAPPRIS ALT2 TSL 1 (best) BASIC26.43■■□□□ 1.82
SMCHD1A6NHR9 MARCH2-201ENST00000215555 1376 ntAPPRIS P1 TSL 5 BASIC26.43■■□□□ 1.82
SMCHD1A6NHR9 SNX21-204ENST00000372542 1824 ntAPPRIS P1 TSL 2 BASIC26.43■■□□□ 1.82
SMCHD1A6NHR9 BIN1-201ENST00000259238 2338 ntTSL 1 (best) BASIC26.43■■□□□ 1.82
SMCHD1A6NHR9 C19orf60-201ENST00000358607 839 ntAPPRIS P3 TSL 1 (best) BASIC26.43■■□□□ 1.82
SMCHD1A6NHR9 TMEM147-203ENST00000392205 767 ntTSL 2 BASIC26.43■■□□□ 1.82
SMCHD1A6NHR9 C19orf60-202ENST00000450195 702 ntAPPRIS ALT2 TSL 1 (best) BASIC26.43■■□□□ 1.82
SMCHD1A6NHR9 PBX2P1-201ENST00000493219 1291 ntBASIC26.43■■□□□ 1.82
SMCHD1A6NHR9 RASGEF1B-208ENST00000510780 539 ntTSL 3 BASIC26.43■■□□□ 1.82
Retrieved 100 of 98,524 protein–RNA pairs in 22.6 ms