Protein–RNA interactions for Protein: P53804

TTC3, E3 ubiquitin-protein ligase TTC3, humanhuman

Predictions only

Length 2,025 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TTC3P53804 TMEM104-205ENST00000582773 1740 ntTSL 2 BASIC25.14■■□□□ 1.62
TTC3P53804 BCAP31-207ENST00000458587 1810 ntTSL 1 (best) BASIC25.14■■□□□ 1.61
TTC3P53804 RINL-202ENST00000591812 1910 ntAPPRIS ALT2 TSL 2 BASIC25.14■■□□□ 1.61
TTC3P53804 VAMP2-204ENST00000488857 874 ntAPPRIS ALT1 TSL 3 BASIC25.13■■□□□ 1.61
TTC3P53804 FEZ2-204ENST00000405912 1931 ntTSL 1 (best) BASIC25.13■■□□□ 1.61
TTC3P53804 ZNF641-205ENST00000547026 1823 ntAPPRIS P1 TSL 1 (best) BASIC25.13■■□□□ 1.61
TTC3P53804 TSEN34-204ENST00000429671 1912 ntTSL 2 BASIC25.13■■□□□ 1.61
TTC3P53804 TNFRSF6B-201ENST00000369996 1124 ntAPPRIS P1 TSL 1 (best) BASIC25.13■■□□□ 1.61
TTC3P53804 CROT-202ENST00000412227 1213 ntTSL 1 (best) BASIC25.13■■□□□ 1.61
TTC3P53804 SDHAP1-204ENST00000427415 559 ntTSL 4 BASIC25.13■■□□□ 1.61
TTC3P53804 SMIM29-205ENST00000468145 903 ntTSL 2 BASIC25.13■■□□□ 1.61
TTC3P53804 SMIM29-207ENST00000481533 1053 ntAPPRIS P1 TSL 1 (best) BASIC25.13■■□□□ 1.61
TTC3P53804 TYROBP-203ENST00000544690 522 ntTSL 1 (best) BASIC25.13■■□□□ 1.61
TTC3P53804 ARHGDIA-217ENST00000584461 886 ntTSL 2 BASIC25.13■■□□□ 1.61
TTC3P53804 BAG1-212ENST00000641048 1038 ntAPPRIS P3 BASIC25.13■■□□□ 1.61
TTC3P53804 RBMXL2-201ENST00000306904 1874 ntAPPRIS P1 BASIC25.13■■□□□ 1.61
TTC3P53804 CACNG7-203ENST00000391767 2688 ntAPPRIS P1 TSL 5 BASIC25.13■■□□□ 1.61
TTC3P53804 C19orf12-204ENST00000392276 1912 ntTSL 1 (best) BASIC25.12■■□□□ 1.61
TTC3P53804 GATA4-209ENST00000622443 1982 ntTSL 5 BASIC25.12■■□□□ 1.61
TTC3P53804 ELOC-206ENST00000520242 1573 ntAPPRIS P1 TSL 1 (best) BASIC25.12■■□□□ 1.61
TTC3P53804 SERGEF-219ENST00000532265 1124 ntTSL 2 BASIC25.12■■□□□ 1.61
TTC3P53804 EXOC3-209ENST00000512944 2825 ntAPPRIS P1 TSL 1 (best) BASIC25.11■■□□□ 1.61
TTC3P53804 RCE1-202ENST00000524506 1379 ntTSL 5 BASIC25.11■■□□□ 1.61
TTC3P53804 AC131274.2-201ENST00000580697 1507 ntBASIC25.11■■□□□ 1.61
TTC3P53804 DUX4L19-201ENST00000557448 1267 ntBASIC25.11■■□□□ 1.61
TTC3P53804 AF213884.3-201ENST00000563833 479 ntBASIC25.1■■□□□ 1.61
TTC3P53804 ROM1-201ENST00000278833 1878 ntAPPRIS P2 TSL 1 (best) BASIC25.1■■□□□ 1.61
TTC3P53804 C1orf35-201ENST00000272139 1427 ntAPPRIS P1 TSL 1 (best) BASIC25.1■■□□□ 1.61
TTC3P53804 AJAP1-201ENST00000378190 2383 ntAPPRIS P1 TSL 5 BASIC25.1■■□□□ 1.61
TTC3P53804 MSANTD2-201ENST00000239614 2495 ntTSL 2 BASIC25.1■■□□□ 1.61
TTC3P53804 AC092803.2-201ENST00000564287 1899 ntBASIC25.09■■□□□ 1.61
TTC3P53804 ECHDC1-203ENST00000368291 1354 ntTSL 2 BASIC25.09■■□□□ 1.61
TTC3P53804 KAZALD1-201ENST00000370200 1913 ntAPPRIS P1 TSL 1 (best) BASIC25.09■■□□□ 1.61
TTC3P53804 FLJ37453-201ENST00000317122 2473 ntTSL 2 BASIC25.09■■□□□ 1.61
TTC3P53804 TMEM125-202ENST00000439858 1786 ntAPPRIS P1 TSL 2 BASIC25.09■■□□□ 1.61
TTC3P53804 AL355001.2-201ENST00000620617 1191 ntBASIC25.09■■□□□ 1.61
TTC3P53804 CCND3-223ENST00000616010 2047 ntTSL 5 BASIC25.09■■□□□ 1.61
TTC3P53804 B3GALT4-204ENST00000451237 1694 ntAPPRIS P1 BASIC25.09■■□□□ 1.61
TTC3P53804 KAT8-206ENST00000543774 1846 ntAPPRIS P1 TSL 5 BASIC25.09■■□□□ 1.61
TTC3P53804 CTBP1-201ENST00000290921 2297 ntTSL 1 (best) BASIC25.09■■□□□ 1.61
TTC3P53804 AC012123.1-201ENST00000426194 1661 ntTSL 5 BASIC25.09■■□□□ 1.61
TTC3P53804 TMEM147-203ENST00000392205 767 ntTSL 2 BASIC25.08■■□□□ 1.61
TTC3P53804 SRD5A1P1-201ENST00000442297 786 ntBASIC25.08■■□□□ 1.61
TTC3P53804 WDR86-AS1-204ENST00000489632 751 ntTSL 3 BASIC25.08■■□□□ 1.61
TTC3P53804 CCDC107-205ENST00000421582 1324 ntAPPRIS ALT2 TSL 2 BASIC25.08■■□□□ 1.61
TTC3P53804 RFLNA-205ENST00000546355 2354 ntAPPRIS ALT1 TSL 1 (best) BASIC25.08■■□□□ 1.61
TTC3P53804 AP001330.3-201ENST00000520123 633 ntBASIC25.08■■□□□ 1.61
TTC3P53804 CCDC189-211ENST00000545825 1046 ntTSL 1 (best) BASIC25.08■■□□□ 1.61
TTC3P53804 SYT8-201ENST00000341958 1556 ntAPPRIS ALT2 TSL 5 BASIC25.08■■□□□ 1.6
TTC3P53804 FAM107B-205ENST00000378467 2374 ntAPPRIS P1 TSL 1 (best) BASIC25.08■■□□□ 1.6
TTC3P53804 CREB3L3-205ENST00000602257 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC25.07■■□□□ 1.6
TTC3P53804 PEA15-201ENST00000360472 2471 ntAPPRIS P1 TSL 1 (best) BASIC25.07■■□□□ 1.6
TTC3P53804 PRADC1-201ENST00000258083 1083 ntAPPRIS P1 TSL 1 (best) BASIC25.07■■□□□ 1.6
TTC3P53804 ZNF264-206ENST00000600531 774 ntTSL 2 BASIC25.07■■□□□ 1.6
TTC3P53804 C14orf80-204ENST00000392522 1630 ntAPPRIS P4 TSL 5 BASIC25.07■■□□□ 1.6
TTC3P53804 BAMBI-201ENST00000375533 1877 ntAPPRIS P1 TSL 1 (best) BASIC25.07■■□□□ 1.6
TTC3P53804 PFKFB4-204ENST00000416568 1575 ntTSL 1 (best) BASIC25.07■■□□□ 1.6
TTC3P53804 PRELID1-203ENST00000503216 1171 ntTSL 1 (best) BASIC25.07■■□□□ 1.6
TTC3P53804 ATP10A-207ENST00000619904 988 ntTSL 5 BASIC25.07■■□□□ 1.6
TTC3P53804 HSF4-225ENST00000584272 1549 ntTSL 1 (best) BASIC25.06■■□□□ 1.6
TTC3P53804 RPP38-207ENST00000616640 1537 ntAPPRIS P1 TSL 2 BASIC25.06■■□□□ 1.6
TTC3P53804 CNPY3-202ENST00000394142 954 ntTSL 5 BASIC25.06■■□□□ 1.6
TTC3P53804 DPP10-AS1-201ENST00000432658 730 ntTSL 1 (best) BASIC25.06■■□□□ 1.6
TTC3P53804 AC105265.2-201ENST00000467189 838 ntBASIC25.06■■□□□ 1.6
TTC3P53804 TMEM218-209ENST00000529583 848 ntAPPRIS P1 TSL 3 BASIC25.06■■□□□ 1.6
TTC3P53804 PLPPR3-201ENST00000359894 2387 ntAPPRIS P3 TSL 1 (best) BASIC25.06■■□□□ 1.6
TTC3P53804 HOMER3-205ENST00000542541 1607 ntAPPRIS P3 TSL 1 (best) BASIC25.06■■□□□ 1.6
TTC3P53804 FNDC4-201ENST00000264703 1657 ntAPPRIS P1 TSL 1 (best) BASIC25.06■■□□□ 1.6
TTC3P53804 PTH1R-206ENST00000430002 1947 ntAPPRIS P1 TSL 1 (best) BASIC25.06■■□□□ 1.6
TTC3P53804 FGF8-204ENST00000347978 823 ntTSL 1 (best) BASIC25.05■■□□□ 1.6
TTC3P53804 LBX2-202ENST00000377566 1186 ntAPPRIS P1 TSL 1 (best) BASIC25.05■■□□□ 1.6
TTC3P53804 BAD-203ENST00000394532 1157 ntAPPRIS P1 TSL 1 (best) BASIC25.05■■□□□ 1.6
TTC3P53804 CD63-202ENST00000420846 981 ntAPPRIS P1 TSL 5 BASIC25.05■■□□□ 1.6
TTC3P53804 MARCH2-201ENST00000215555 1376 ntAPPRIS P1 TSL 5 BASIC25.05■■□□□ 1.6
TTC3P53804 ZKSCAN7-206ENST00000431636 1692 ntTSL 1 (best) BASIC25.05■■□□□ 1.6
TTC3P53804 KIAA2013-201ENST00000376572 2815 ntAPPRIS P1 TSL 1 (best) BASIC25.05■■□□□ 1.6
TTC3P53804 STOML2-201ENST00000356493 1278 ntAPPRIS P1 TSL 1 (best) BASIC25.05■■□□□ 1.6
TTC3P53804 MIR939-201ENST00000401314 82 ntBASIC25.05■■□□□ 1.6
TTC3P53804 GRAMD4P4-201ENST00000613563 1115 ntBASIC25.05■■□□□ 1.6
TTC3P53804 AL136967.2-201ENST00000623968 743 ntBASIC25.05■■□□□ 1.6
TTC3P53804 DLK2-202ENST00000372485 1572 ntAPPRIS ALT1 TSL 5 BASIC25.04■■□□□ 1.6
TTC3P53804 SDSL-201ENST00000345635 1397 ntAPPRIS P1 TSL 1 (best) BASIC25.04■■□□□ 1.6
TTC3P53804 NAA38-201ENST00000333775 999 ntTSL 1 (best) BASIC25.04■■□□□ 1.6
TTC3P53804 TGFBR3L-202ENST00000565886 1260 ntAPPRIS P1 TSL 5 BASIC25.04■■□□□ 1.6
TTC3P53804 PRKAR1B-203ENST00000403562 1917 ntAPPRIS P1 TSL 1 (best) BASIC25.03■■□□□ 1.6
TTC3P53804 MROH6-210ENST00000533679 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC25.03■■□□□ 1.6
TTC3P53804 FBXL20-203ENST00000577399 1620 ntTSL 5 BASIC25.03■■□□□ 1.6
TTC3P53804 LLGL2-202ENST00000375227 1374 ntTSL 1 (best) BASIC25.03■■□□□ 1.6
TTC3P53804 LAMTOR1-201ENST00000278671 1179 ntAPPRIS P1 TSL 1 (best) BASIC25.03■■□□□ 1.6
TTC3P53804 YJEFN3-201ENST00000436027 878 ntAPPRIS P1 TSL 1 (best) BASIC25.03■■□□□ 1.6
TTC3P53804 MRAP2-201ENST00000257776 2153 ntAPPRIS P1 TSL 1 (best) BASIC25.02■■□□□ 1.6
TTC3P53804 RABEP2-203ENST00000544477 1645 ntTSL 2 BASIC25.02■■□□□ 1.6
TTC3P53804 STX10-202ENST00000343587 1128 ntTSL 1 (best) BASIC25.02■■□□□ 1.6
TTC3P53804 HSPE1-203ENST00000409729 478 ntTSL 2 BASIC25.02■■□□□ 1.6
TTC3P53804 RARA-AS1-201ENST00000581080 1790 ntTSL 1 (best) BASIC25.02■■□□□ 1.6
TTC3P53804 HYI-206ENST00000372434 1025 ntTSL 5 BASIC25.02■■□□□ 1.6
TTC3P53804 KLRG2-202ENST00000393039 1148 ntTSL 5 BASIC25.02■■□□□ 1.6
TTC3P53804 GATA2-AS1-201ENST00000464242 1163 ntTSL 2 BASIC25.02■■□□□ 1.6
TTC3P53804 ZDHHC16-206ENST00000370854 1798 ntAPPRIS P4 TSL 1 (best) BASIC25.01■■□□□ 1.59
TTC3P53804 PFKFB4-202ENST00000383734 1491 ntTSL 1 (best) BASIC25.01■■□□□ 1.59
Retrieved 100 of 98,524 protein–RNA pairs in 53.7 ms