Protein–RNA interactions for Protein: O75445

USH2A, Usherin, humanhuman

Predictions only

Length 5,202 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USH2AO75445 AP001005.4-202ENST00000575325 560 ntTSL 4 BASIC10.54□□□□□ -0.72
USH2AO75445 NTF6G-201ENST00000591094 616 ntBASIC10.54□□□□□ -0.72
USH2AO75445 PDSS1-201ENST00000376215 1626 ntAPPRIS P1 TSL 1 (best) BASIC10.54□□□□□ -0.72
USH2AO75445 ST3GAL5-231ENST00000639119 2131 ntTSL 5 BASIC10.53□□□□□ -0.72
USH2AO75445 REST-212ENST00000640343 1352 ntTSL 1 (best) BASIC10.53□□□□□ -0.72
USH2AO75445 AC099681.3-201ENST00000421500 939 ntTSL 4 BASIC10.53□□□□□ -0.72
USH2AO75445 AC006015.1-201ENST00000429970 570 ntBASIC10.53□□□□□ -0.72
USH2AO75445 AL499627.2-201ENST00000606283 725 ntBASIC10.53□□□□□ -0.72
USH2AO75445 WTAP-201ENST00000337387 1622 ntTSL 1 (best) BASIC10.53□□□□□ -0.72
USH2AO75445 ANKRD53-204ENST00000457410 1671 ntTSL 5 BASIC10.53□□□□□ -0.72
USH2AO75445 NMRAL1-202ENST00000404295 1233 ntAPPRIS P1 TSL 1 (best) BASIC10.53□□□□□ -0.72
USH2AO75445 AL122058.1-201ENST00000412321 1166 ntTSL 1 (best) BASIC10.53□□□□□ -0.72
USH2AO75445 DDN-AS1-201ENST00000547395 858 ntTSL 2 BASIC10.53□□□□□ -0.72
USH2AO75445 ZNF846-212ENST00000592859 1206 ntTSL 2 BASIC10.53□□□□□ -0.72
USH2AO75445 NPHS2-202ENST00000367616 1670 ntTSL 1 (best) BASIC10.53□□□□□ -0.72
USH2AO75445 GALK1-201ENST00000225614 1445 ntAPPRIS P1 TSL 2 BASIC10.53□□□□□ -0.72
USH2AO75445 HES3-201ENST00000377898 697 ntAPPRIS P1 TSL 2 BASIC10.53□□□□□ -0.72
USH2AO75445 GXYLT1P2-201ENST00000433312 1230 ntBASIC10.53□□□□□ -0.72
USH2AO75445 PGAP3-204ENST00000429199 970 ntTSL 2 BASIC10.52□□□□□ -0.72
USH2AO75445 MGAT5B-207ENST00000565675 872 ntTSL 1 (best) BASIC10.52□□□□□ -0.72
USH2AO75445 MADCAM1-208ENST00000621286 1203 ntAPPRIS ALT2 TSL 5 BASIC10.52□□□□□ -0.72
USH2AO75445 ZDHHC23-206ENST00000498275 2055 ntAPPRIS ALT2 TSL 2 BASIC10.52□□□□□ -0.72
USH2AO75445 THOC6-202ENST00000326266 1419 ntAPPRIS P1 TSL 1 (best) BASIC10.52□□□□□ -0.72
USH2AO75445 MRPL14-201ENST00000372014 959 ntAPPRIS P1 TSL 1 (best) BASIC10.52□□□□□ -0.73
USH2AO75445 COX6C-208ENST00000522940 694 ntAPPRIS P1 TSL 3 BASIC10.52□□□□□ -0.73
USH2AO75445 C17orf82-201ENST00000623772 1530 ntBASIC10.52□□□□□ -0.73
USH2AO75445 AP003419.1-201ENST00000535922 470 ntTSL 3 BASIC10.52□□□□□ -0.73
USH2AO75445 AL831711.1-201ENST00000636824 569 ntTSL 4 BASIC10.52□□□□□ -0.73
USH2AO75445 TSPAN33-201ENST00000486685 1863 ntAPPRIS P1 TSL 1 (best) BASIC10.52□□□□□ -0.73
USH2AO75445 AL355802.2-201ENST00000402069 882 ntBASIC10.52□□□□□ -0.73
USH2AO75445 HNRNPD-203ENST00000353341 1585 ntAPPRIS ALT1 TSL 1 (best) BASIC10.52□□□□□ -0.73
USH2AO75445 PLAC9-202ENST00000372267 472 ntAPPRIS ALT2 TSL 3 BASIC10.51□□□□□ -0.73
USH2AO75445 CBFB-203ENST00000561924 584 ntTSL 5 BASIC10.51□□□□□ -0.73
USH2AO75445 MIF4GD-211ENST00000580571 952 ntTSL 2 BASIC10.51□□□□□ -0.73
USH2AO75445 AC006538.2-201ENST00000586572 543 ntAPPRIS P1 TSL 4 BASIC10.51□□□□□ -0.73
USH2AO75445 C6orf89-201ENST00000355190 1309 ntAPPRIS P3 TSL 1 (best) BASIC10.51□□□□□ -0.73
USH2AO75445 TRIR-201ENST00000242784 970 ntAPPRIS P1 TSL 1 (best) BASIC10.51□□□□□ -0.73
USH2AO75445 UCN-201ENST00000296099 795 ntAPPRIS P1 TSL 1 (best) BASIC10.51□□□□□ -0.73
USH2AO75445 NOX4-204ENST00000393282 560 ntTSL 1 (best) BASIC10.51□□□□□ -0.73
USH2AO75445 CCDC92B-201ENST00000575506 885 ntBASIC10.51□□□□□ -0.73
USH2AO75445 AC007773.1-201ENST00000592680 972 ntTSL 2 BASIC10.51□□□□□ -0.73
USH2AO75445 AC099791.2-201ENST00000605725 427 ntBASIC10.51□□□□□ -0.73
USH2AO75445 JARID2-AS1-201ENST00000441978 455 ntTSL 1 (best) BASIC10.51□□□□□ -0.73
USH2AO75445 TRAPPC5-203ENST00000595985 411 ntTSL 3 BASIC10.51□□□□□ -0.73
USH2AO75445 RNASEH2B-206ENST00000611510 1257 ntTSL 5 BASIC10.51□□□□□ -0.73
USH2AO75445 GAMT-205ENST00000640762 751 ntTSL 5 BASIC10.51□□□□□ -0.73
USH2AO75445 IL15RA-214ENST00000525219 1850 ntAPPRIS ALT2 TSL 1 (best) BASIC10.51□□□□□ -0.73
USH2AO75445 CAPN10-202ENST00000270364 1267 ntTSL 2 BASIC10.51□□□□□ -0.73
USH2AO75445 ANKRD10-202ENST00000310847 1193 ntTSL 1 (best) BASIC10.51□□□□□ -0.73
USH2AO75445 ZEB1-AS1-201ENST00000423714 456 ntTSL 3 BASIC10.51□□□□□ -0.73
USH2AO75445 CCKBR-206ENST00000532715 1734 ntTSL 3 BASIC10.5□□□□□ -0.73
USH2AO75445 UTF1-201ENST00000304477 1157 ntAPPRIS P1 TSL 1 (best) BASIC10.5□□□□□ -0.73
USH2AO75445 OLFM1-206ENST00000371799 961 ntTSL 1 (best) BASIC10.5□□□□□ -0.73
USH2AO75445 KRT18P14-201ENST00000534205 1250 ntBASIC10.5□□□□□ -0.73
USH2AO75445 MCRIP1-205ENST00000572645 1038 ntTSL 1 (best) BASIC10.5□□□□□ -0.73
USH2AO75445 AC005775.1-201ENST00000592413 850 ntTSL 5 BASIC10.5□□□□□ -0.73
USH2AO75445 SV2B-203ENST00000545111 2099 ntTSL 2 BASIC10.5□□□□□ -0.73
USH2AO75445 AC112229.4-201ENST00000488671 1528 ntTSL 2 BASIC10.5□□□□□ -0.73
USH2AO75445 BAD-203ENST00000394532 1157 ntAPPRIS P1 TSL 1 (best) BASIC10.5□□□□□ -0.73
USH2AO75445 MIR6722-201ENST00000617286 78 ntBASIC10.5□□□□□ -0.73
USH2AO75445 C7orf49-203ENST00000430372 1579 ntTSL 5 BASIC10.5□□□□□ -0.73
USH2AO75445 MEN1-204ENST00000377313 1871 ntAPPRIS P3 TSL 2 BASIC10.5□□□□□ -0.73
USH2AO75445 MIR6084-201ENST00000622012 110 ntBASIC10.5□□□□□ -0.73
USH2AO75445 AL032819.3-201ENST00000640283 925 ntAPPRIS P1 TSL 5 BASIC10.5□□□□□ -0.73
USH2AO75445 ENTPD5-206ENST00000556242 1437 ntTSL 5 BASIC10.49□□□□□ -0.73
USH2AO75445 TMEM179-204ENST00000556573 1430 ntAPPRIS P1 TSL 3 BASIC10.49□□□□□ -0.73
USH2AO75445 AQP12B-201ENST00000407834 1094 ntAPPRIS P2 TSL 1 (best) BASIC10.49□□□□□ -0.73
USH2AO75445 GUSBP6-202ENST00000438529 1198 ntBASIC10.49□□□□□ -0.73
USH2AO75445 KRT18P6-201ENST00000555540 1265 ntBASIC10.49□□□□□ -0.73
USH2AO75445 MARCH2-201ENST00000215555 1376 ntAPPRIS P1 TSL 5 BASIC10.49□□□□□ -0.73
USH2AO75445 STEAP2-207ENST00000402625 1372 ntTSL 5 BASIC10.49□□□□□ -0.73
USH2AO75445 MFSD7-202ENST00000347950 1599 ntTSL 2 BASIC10.49□□□□□ -0.73
USH2AO75445 MXD3-201ENST00000423571 1534 ntTSL 2 BASIC10.49□□□□□ -0.73
USH2AO75445 NFKBIB-201ENST00000313582 1159 ntAPPRIS P1 TSL 1 (best) BASIC10.49□□□□□ -0.73
USH2AO75445 HYI-204ENST00000372432 1066 ntTSL 1 (best) BASIC10.49□□□□□ -0.73
USH2AO75445 VSX1-201ENST00000376707 943 ntTSL 1 (best) BASIC10.49□□□□□ -0.73
USH2AO75445 VSX1-206ENST00000444511 1197 ntTSL 1 (best) BASIC10.49□□□□□ -0.73
USH2AO75445 CREB3L3-205ENST00000602257 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC10.49□□□□□ -0.73
USH2AO75445 CTU1-201ENST00000421832 2087 ntAPPRIS P1 TSL 2 BASIC10.49□□□□□ -0.73
USH2AO75445 MPRIP-203ENST00000395806 527 ntTSL 3 BASIC10.49□□□□□ -0.73
USH2AO75445 POLE4-205ENST00000483063 1248 ntAPPRIS P1 TSL 1 (best) BASIC10.49□□□□□ -0.73
USH2AO75445 FNDC4-201ENST00000264703 1657 ntAPPRIS P1 TSL 1 (best) BASIC10.49□□□□□ -0.73
USH2AO75445 AC005703.6-201ENST00000623265 1329 ntBASIC10.48□□□□□ -0.73
USH2AO75445 CERS1-201ENST00000429504 2094 ntTSL 1 (best) BASIC10.48□□□□□ -0.73
USH2AO75445 WSB2-201ENST00000315436 2646 ntAPPRIS P1 TSL 1 (best) BASIC10.48□□□□□ -0.73
USH2AO75445 NAA30-202ENST00000554703 795 ntTSL 1 (best) BASIC10.48□□□□□ -0.73
USH2AO75445 LEFTY1-201ENST00000272134 1626 ntAPPRIS P1 TSL 1 (best) BASIC10.48□□□□□ -0.73
USH2AO75445 WT1-AS_3.1-201ENST00000613262 234 ntBASIC10.48□□□□□ -0.73
USH2AO75445 SLC35A3-213ENST00000638988 1286 ntTSL 5 BASIC10.48□□□□□ -0.73
USH2AO75445 LINC00454-202ENST00000430978 1327 ntTSL 5 BASIC10.48□□□□□ -0.73
USH2AO75445 FOXD3-201ENST00000371116 2086 ntAPPRIS P1 BASIC10.48□□□□□ -0.73
USH2AO75445 TPM2-203ENST00000378292 2147 ntAPPRIS ALT1 TSL 1 (best) BASIC10.48□□□□□ -0.73
USH2AO75445 PHLDA3-201ENST00000367309 896 ntAPPRIS P1 TSL 5 BASIC10.48□□□□□ -0.73
USH2AO75445 JDP2-202ENST00000419727 972 ntAPPRIS P1 TSL 2 BASIC10.48□□□□□ -0.73
USH2AO75445 LRRC37A17P-202ENST00000570478 572 ntTSL 4 BASIC10.48□□□□□ -0.73
USH2AO75445 PARP1-210ENST00000629232 477 ntTSL 5 BASIC10.48□□□□□ -0.73
USH2AO75445 GLRX3-201ENST00000331244 1302 ntAPPRIS P1 TSL 1 (best) BASIC10.48□□□□□ -0.73
USH2AO75445 RAD21-AS1-201ENST00000521487 2010 ntTSL 1 (best) BASIC10.48□□□□□ -0.73
USH2AO75445 GFRA3-202ENST00000378362 1837 ntAPPRIS ALT2 TSL 1 (best) BASIC10.48□□□□□ -0.73
USH2AO75445 NEDD8-201ENST00000250495 708 ntAPPRIS P1 TSL 1 (best) BASIC10.48□□□□□ -0.73
Retrieved 100 of 98,524 protein–RNA pairs in 24.1 ms