Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 KCTD15-206ENST00000588881 1211 ntAPPRIS P1 TSL 2 BASIC21.35■■□□□ 1.01
ZNF540Q8NDQ6 MDFIC-208ENST00000614186 1068 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
ZNF540Q8NDQ6 WHAMM-201ENST00000286760 5101 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
ZNF540Q8NDQ6 C7orf25-206ENST00000447342 1823 ntTSL 2 BASIC21.34■■□□□ 1.01
ZNF540Q8NDQ6 HOMER2-201ENST00000304231 1990 ntAPPRIS P4 TSL 5 BASIC21.34■■□□□ 1.01
ZNF540Q8NDQ6 H2AFY-217ENST00000511689 2789 ntAPPRIS P4 TSL 1 (best) BASIC21.34■■□□□ 1.01
ZNF540Q8NDQ6 RABEP2-203ENST00000544477 1645 ntTSL 2 BASIC21.34■■□□□ 1.01
ZNF540Q8NDQ6 SLC52A2-208ENST00000527078 1790 ntAPPRIS P1 TSL 5 BASIC21.34■■□□□ 1.01
ZNF540Q8NDQ6 LACTBL1-202ENST00000618559 1500 ntAPPRIS ALT2 TSL 5 BASIC21.34■■□□□ 1.01
ZNF540Q8NDQ6 HIRA-201ENST00000263208 4053 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
ZNF540Q8NDQ6 CDH23-206ENST00000398842 1759 ntTSL 5 BASIC21.33■■□□□ 1.01
ZNF540Q8NDQ6 KAT8-202ENST00000448516 1789 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
ZNF540Q8NDQ6 ADD1-202ENST00000355842 4743 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
ZNF540Q8NDQ6 KIF13A-207ENST00000502704 1330 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
ZNF540Q8NDQ6 FBXL6-202ENST00000455319 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC21.33■■□□□ 1.01
ZNF540Q8NDQ6 AC126177.7-201ENST00000547904 679 ntBASIC21.33■■□□□ 1.01
ZNF540Q8NDQ6 SLC25A29-202ENST00000392908 2242 ntTSL 2 BASIC21.33■■□□□ 1
ZNF540Q8NDQ6 B3GALT6-201ENST00000379198 2777 ntAPPRIS P1 BASIC21.33■■□□□ 1
ZNF540Q8NDQ6 AQP10-201ENST00000324978 1791 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
ZNF540Q8NDQ6 ATPAF1-213ENST00000574428 1760 ntTSL 1 (best) BASIC21.33■■□□□ 1
ZNF540Q8NDQ6 MAPKAPK5-AS1-201ENST00000428207 2290 ntTSL 1 (best) BASIC21.32■■□□□ 1
ZNF540Q8NDQ6 GNAL-201ENST00000269162 1722 ntAPPRIS P1 TSL 2 BASIC21.32■■□□□ 1
ZNF540Q8NDQ6 MAF-202ENST00000393350 6384 ntAPPRIS ALT2 BASIC21.32■■□□□ 1
ZNF540Q8NDQ6 POLR2J2-202ENST00000358438 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC21.32■■□□□ 1
ZNF540Q8NDQ6 POLR2J3-220ENST00000613744 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC21.32■■□□□ 1
ZNF540Q8NDQ6 ANO8-204ENST00000630631 1905 ntTSL 5 BASIC21.32■■□□□ 1
ZNF540Q8NDQ6 NKX2-1-201ENST00000354822 2191 ntTSL 1 (best) BASIC21.32■■□□□ 1
ZNF540Q8NDQ6 GADD45A-205ENST00000617962 1142 ntTSL 1 (best) BASIC21.32■■□□□ 1
ZNF540Q8NDQ6 DTNB-210ENST00000407186 2275 ntTSL 5 BASIC21.32■■□□□ 1
ZNF540Q8NDQ6 PITX1-201ENST00000265340 2406 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
ZNF540Q8NDQ6 TGFBR1-202ENST00000374994 6516 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
ZNF540Q8NDQ6 AL117328.2-201ENST00000624617 1940 ntBASIC21.31■■□□□ 1
ZNF540Q8NDQ6 HACD1-202ENST00000361271 2237 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
ZNF540Q8NDQ6 BARHL1-201ENST00000263610 2341 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
ZNF540Q8NDQ6 KLHL21-203ENST00000463043 667 ntTSL 5 BASIC21.31■■□□□ 1
ZNF540Q8NDQ6 CCDC9-201ENST00000221922 2093 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
ZNF540Q8NDQ6 SAP30L-201ENST00000297109 6226 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
ZNF540Q8NDQ6 SHD-204ENST00000599689 1729 ntTSL 5 BASIC21.31■■□□□ 1
ZNF540Q8NDQ6 EPB41L4A-AS2-201ENST00000623705 1396 ntBASIC21.31■■□□□ 1
ZNF540Q8NDQ6 GPR137-202ENST00000377702 1478 ntTSL 1 (best) BASIC21.31■■□□□ 1
ZNF540Q8NDQ6 CCDC71L-201ENST00000315965 1575 ntAPPRIS ALT2 TSL 5 BASIC21.31■■□□□ 1
ZNF540Q8NDQ6 SAC3D1-201ENST00000398846 1566 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
ZNF540Q8NDQ6 BTBD6-205ENST00000536364 1973 ntAPPRIS P2 TSL 5 BASIC21.3■■□□□ 1
ZNF540Q8NDQ6 RSPH1-201ENST00000291536 1430 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
ZNF540Q8NDQ6 IER5L-201ENST00000372491 2711 ntAPPRIS P1 BASIC21.3■■□□□ 1
ZNF540Q8NDQ6 MAGI2-202ENST00000419488 6800 ntAPPRIS ALT2 TSL 1 (best) BASIC21.3■■□□□ 1
ZNF540Q8NDQ6 TATDN2-201ENST00000287652 5342 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
ZNF540Q8NDQ6 PLEKHF2-202ENST00000519516 1144 ntAPPRIS P1 TSL 3 BASIC21.3■■□□□ 1
ZNF540Q8NDQ6 SLC52A2-211ENST00000532887 2147 ntAPPRIS P1 TSL 5 BASIC21.3■■□□□ 1
ZNF540Q8NDQ6 KLC1-227ENST00000634686 2229 ntTSL 5 BASIC21.3■■□□□ 1
ZNF540Q8NDQ6 GAL3ST2-201ENST00000192314 1370 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
ZNF540Q8NDQ6 PCYT2-204ENST00000570388 1474 ntTSL 2 BASIC21.3■■□□□ 1
ZNF540Q8NDQ6 NCK2-201ENST00000233154 2683 ntAPPRIS P1 TSL 5 BASIC21.3■■□□□ 1
ZNF540Q8NDQ6 PCMT1-202ENST00000367380 1628 ntTSL 2 BASIC21.29■■□□□ 1
ZNF540Q8NDQ6 PCMT1-211ENST00000544496 1628 ntTSL 2 BASIC21.29■■□□□ 1
ZNF540Q8NDQ6 LSR-202ENST00000354900 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC21.29■■□□□ 1
ZNF540Q8NDQ6 GAL3ST3-203ENST00000527878 1599 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
ZNF540Q8NDQ6 ATOH7-201ENST00000373673 1480 ntAPPRIS P1 BASIC21.29■■□□□ 1
ZNF540Q8NDQ6 PMS1-220ENST00000618056 1468 ntTSL 5 BASIC21.29■■□□□ 1
ZNF540Q8NDQ6 TNFRSF4-201ENST00000379236 1068 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
ZNF540Q8NDQ6 PKM-201ENST00000319622 2717 ntAPPRIS P5 TSL 2 BASIC21.29■■□□□ 1
ZNF540Q8NDQ6 PTPRJ-201ENST00000418331 5122 ntAPPRIS P2 TSL 1 (best) BASIC21.29■■□□□ 1
ZNF540Q8NDQ6 MIR219A2-201ENST00000608502 1504 ntBASIC21.29■■□□□ 1
ZNF540Q8NDQ6 ABHD6-201ENST00000295962 2393 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
ZNF540Q8NDQ6 RUNX1-205ENST00000399240 1590 ntTSL 3 BASIC21.28■■□□□ 1
ZNF540Q8NDQ6 EFCC1-201ENST00000436022 2691 ntAPPRIS P1 TSL 5 BASIC21.28■■□□□ 1
ZNF540Q8NDQ6 TMEM114-202ENST00000568335 899 ntTSL 3 BASIC21.28■■□□□ 1
ZNF540Q8NDQ6 ITM2C-202ENST00000326427 2078 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
ZNF540Q8NDQ6 NRG2-201ENST00000289409 2535 ntAPPRIS ALT2 TSL 5 BASIC21.28■■□□□ 1
ZNF540Q8NDQ6 KCNQ5-213ENST00000629977 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC21.28■■□□□ 1
ZNF540Q8NDQ6 AL359258.2-201ENST00000564063 1566 ntBASIC21.27■■□□□ 1
ZNF540Q8NDQ6 SDS-201ENST00000257549 1606 ntAPPRIS P1 TSL 2 BASIC21.27■■□□□ 1
ZNF540Q8NDQ6 TM6SF1-204ENST00000379390 1638 ntTSL 1 (best) BASIC21.27■■□□□ 1
ZNF540Q8NDQ6 PCDH1-204ENST00000503492 2373 ntTSL 5 BASIC21.27■■□□□ 1
ZNF540Q8NDQ6 SCN1B-201ENST00000262631 1670 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
ZNF540Q8NDQ6 TANGO2-204ENST00000401833 1920 ntTSL 5 BASIC21.27■■□□□ 1
ZNF540Q8NDQ6 LGR4-201ENST00000379214 5206 ntAPPRIS P1 TSL 1 (best) BASIC21.27■□□□□ 0.99
ZNF540Q8NDQ6 PHYH-201ENST00000263038 1577 ntAPPRIS P1 TSL 1 (best) BASIC21.27■□□□□ 0.99
ZNF540Q8NDQ6 ASAP2-201ENST00000281419 5712 ntAPPRIS P3 TSL 1 (best) BASIC21.26■□□□□ 0.99
ZNF540Q8NDQ6 BDH1-207ENST00000441275 1605 ntTSL 5 BASIC21.26■□□□□ 0.99
ZNF540Q8NDQ6 LSM6-202ENST00000502781 1352 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
ZNF540Q8NDQ6 CAPNS1-216ENST00000628306 1389 ntTSL 5 BASIC21.26■□□□□ 0.99
ZNF540Q8NDQ6 RGS7-204ENST00000366565 2494 ntAPPRIS P3 TSL 1 (best) BASIC21.26■□□□□ 0.99
ZNF540Q8NDQ6 GALC-202ENST00000393568 2054 ntTSL 2 BASIC21.26■□□□□ 0.99
ZNF540Q8NDQ6 ITGB3-202ENST00000571680 1668 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
ZNF540Q8NDQ6 DGKQ-201ENST00000273814 4636 ntAPPRIS P2 TSL 1 (best) BASIC21.26■□□□□ 0.99
ZNF540Q8NDQ6 NTF6A-201ENST00000591175 560 ntBASIC21.26■□□□□ 0.99
ZNF540Q8NDQ6 MEIS3-204ENST00000558555 1715 ntAPPRIS ALT2 TSL 5 BASIC21.26■□□□□ 0.99
ZNF540Q8NDQ6 RAD51-210ENST00000557850 1397 ntTSL 2 BASIC21.25■□□□□ 0.99
ZNF540Q8NDQ6 FGF20-201ENST00000180166 1688 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
ZNF540Q8NDQ6 PXMP2-201ENST00000317479 957 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
ZNF540Q8NDQ6 CMPK2-202ENST00000404168 2042 ntAPPRIS ALT2 TSL 1 (best) BASIC21.25■□□□□ 0.99
ZNF540Q8NDQ6 HOXD-AS2-201ENST00000426965 927 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
ZNF540Q8NDQ6 C16orf95-206ENST00000618367 974 ntAPPRIS ALT2 TSL 2 BASIC21.25■□□□□ 0.99
ZNF540Q8NDQ6 MOGS-202ENST00000409065 2668 ntTSL 5 BASIC21.25■□□□□ 0.99
ZNF540Q8NDQ6 NKX2-4-201ENST00000351817 2238 ntAPPRIS P1 TSL 5 BASIC21.25■□□□□ 0.99
ZNF540Q8NDQ6 PEX10-204ENST00000507596 1941 ntAPPRIS ALT1 TSL 5 BASIC21.25■□□□□ 0.99
ZNF540Q8NDQ6 CDC34-201ENST00000215574 1471 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
ZNF540Q8NDQ6 HMCES-204ENST00000502878 1952 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
ZNF540Q8NDQ6 CCDC47-204ENST00000582252 1719 ntTSL 2 BASIC21.24■□□□□ 0.99
Retrieved 100 of 98,524 protein–RNA pairs in 277 ms