Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 CACNA1B-201ENST00000277549 7158 ntAPPRIS ALT2 TSL 1 (best) BASIC19.04■□□□□ 0.64
PDLIM3Q53GG5 CACNA1B-202ENST00000277551 7158 ntAPPRIS ALT2 TSL 5 BASIC19.04■□□□□ 0.64
PDLIM3Q53GG5 P4HA3-201ENST00000331597 2274 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
PDLIM3Q53GG5 SIN3B-209ENST00000596802 2556 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
PDLIM3Q53GG5 SLC52A2-208ENST00000527078 1790 ntAPPRIS P1 TSL 5 BASIC19.04■□□□□ 0.64
PDLIM3Q53GG5 UPF1-207ENST00000599848 5311 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
PDLIM3Q53GG5 TMEM44-202ENST00000347147 2245 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
PDLIM3Q53GG5 EVA1B-201ENST00000270824 1054 ntAPPRIS P1 TSL 2 BASIC19.04■□□□□ 0.64
PDLIM3Q53GG5 ANKRD20A11P-201ENST00000344693 1088 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
PDLIM3Q53GG5 LRP11-202ENST00000367368 1042 ntTSL 2 BASIC19.04■□□□□ 0.64
PDLIM3Q53GG5 AL355490.1-201ENST00000445808 805 ntTSL 3 BASIC19.04■□□□□ 0.64
PDLIM3Q53GG5 EZH2-208ENST00000483967 2466 ntAPPRIS ALT1 TSL 2 BASIC19.04■□□□□ 0.64
PDLIM3Q53GG5 TMEM165-204ENST00000506198 828 ntTSL 2 BASIC19.04■□□□□ 0.64
PDLIM3Q53GG5 ZNF302-211ENST00000509528 577 ntTSL 4 BASIC19.04■□□□□ 0.64
PDLIM3Q53GG5 LRMDA-215ENST00000611255 1040 ntAPPRIS ALT2 TSL 5 BASIC19.04■□□□□ 0.64
PDLIM3Q53GG5 GALNT12-201ENST00000375011 2735 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
PDLIM3Q53GG5 FRMD8-203ENST00000416776 1818 ntTSL 2 BASIC19.04■□□□□ 0.64
PDLIM3Q53GG5 PGR-AS1-202ENST00000632820 1545 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
PDLIM3Q53GG5 ABHD17C-201ENST00000258884 2368 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
PDLIM3Q53GG5 DAZAP1-205ENST00000587079 2086 ntAPPRIS ALT1 TSL 5 BASIC19.04■□□□□ 0.64
PDLIM3Q53GG5 LSM8-203ENST00000422760 1920 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
PDLIM3Q53GG5 UBALD1-206ENST00000590965 1462 ntTSL 2 BASIC19.03■□□□□ 0.64
PDLIM3Q53GG5 ANKRD54-201ENST00000215941 2184 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
PDLIM3Q53GG5 KRT10-201ENST00000269576 2124 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
PDLIM3Q53GG5 CAPN10-207ENST00000391984 2644 ntAPPRIS P2 TSL 1 (best) BASIC19.03■□□□□ 0.64
PDLIM3Q53GG5 PEMT-206ENST00000435340 960 ntTSL 5 BASIC19.03■□□□□ 0.64
PDLIM3Q53GG5 C14orf80-211ENST00000450383 1107 ntAPPRIS ALT2 TSL 5 BASIC19.03■□□□□ 0.64
PDLIM3Q53GG5 AC007029.1-201ENST00000604183 313 ntBASIC19.03■□□□□ 0.64
PDLIM3Q53GG5 ZDHHC14-204ENST00000414563 3134 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
PDLIM3Q53GG5 ECEL1-202ENST00000409941 2322 ntAPPRIS ALT1 TSL 1 (best) BASIC19.03■□□□□ 0.64
PDLIM3Q53GG5 RAB11FIP4-211ENST00000621161 8628 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
PDLIM3Q53GG5 ARSB-206ENST00000565165 1772 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
PDLIM3Q53GG5 ZFYVE28-202ENST00000503000 1874 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
PDLIM3Q53GG5 ERGIC1-202ENST00000393784 2881 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
PDLIM3Q53GG5 ZNF784-202ENST00000591479 1559 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
PDLIM3Q53GG5 ABHD8-201ENST00000247706 2090 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
PDLIM3Q53GG5 RNPEP-202ENST00000367286 2282 ntTSL 5 BASIC19.02■□□□□ 0.64
PDLIM3Q53GG5 AC006455.5-202ENST00000615248 2284 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
PDLIM3Q53GG5 AQP10-201ENST00000324978 1791 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
PDLIM3Q53GG5 IZUMO4-202ENST00000395301 1021 ntAPPRIS ALT2 TSL 1 (best) BASIC19.02■□□□□ 0.64
PDLIM3Q53GG5 ARHGEF7-AS2-201ENST00000425094 1239 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
PDLIM3Q53GG5 BSPRY-201ENST00000374183 2339 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
PDLIM3Q53GG5 MEIS3-204ENST00000558555 1715 ntAPPRIS ALT2 TSL 5 BASIC19.02■□□□□ 0.63
PDLIM3Q53GG5 NR2F6-201ENST00000291442 2404 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
PDLIM3Q53GG5 DYRK3-203ENST00000367109 2163 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
PDLIM3Q53GG5 ABHD17B-202ENST00000377041 1312 ntAPPRIS P4 TSL 1 (best) BASIC19.01■□□□□ 0.63
PDLIM3Q53GG5 KAT8-202ENST00000448516 1789 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
PDLIM3Q53GG5 ATP5G2-208ENST00000552242 1950 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
PDLIM3Q53GG5 SLC22A18-201ENST00000312221 1628 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
PDLIM3Q53GG5 RABEP2-203ENST00000544477 1645 ntTSL 2 BASIC19.01■□□□□ 0.63
PDLIM3Q53GG5 ANKLE2-201ENST00000357997 4646 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
PDLIM3Q53GG5 KLF9-201ENST00000377126 5175 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
PDLIM3Q53GG5 MPC1-201ENST00000341756 976 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
PDLIM3Q53GG5 KISS1-201ENST00000367194 709 ntAPPRIS P2 TSL 1 (best) BASIC19.01■□□□□ 0.63
PDLIM3Q53GG5 AC104002.3-202ENST00000557170 1100 ntTSL 3 BASIC19.01■□□□□ 0.63
PDLIM3Q53GG5 MPC1-206ENST00000621630 977 ntAPPRIS ALT1 TSL 5 BASIC19.01■□□□□ 0.63
PDLIM3Q53GG5 MPC1-207ENST00000621685 1192 ntTSL 5 BASIC19.01■□□□□ 0.63
PDLIM3Q53GG5 KCNK12-201ENST00000327876 6227 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
PDLIM3Q53GG5 FZD9-201ENST00000344575 2338 ntAPPRIS P1 BASIC19.01■□□□□ 0.63
PDLIM3Q53GG5 SYNGR3-201ENST00000248121 2051 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
PDLIM3Q53GG5 GNAL-201ENST00000269162 1722 ntAPPRIS P1 TSL 2 BASIC19■□□□□ 0.63
PDLIM3Q53GG5 NAXE-203ENST00000368235 1125 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
PDLIM3Q53GG5 AC103834.1-201ENST00000520383 144 ntBASIC19■□□□□ 0.63
PDLIM3Q53GG5 CDKN3-207ENST00000543789 610 ntTSL 5 BASIC19■□□□□ 0.63
PDLIM3Q53GG5 TMEM170A-202ENST00000561878 1072 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
PDLIM3Q53GG5 AC009163.4-201ENST00000567194 530 ntAPPRIS P1 TSL 2 BASIC19■□□□□ 0.63
PDLIM3Q53GG5 CAPNS1-205ENST00000588780 1035 ntAPPRIS ALT2 TSL 5 BASIC19■□□□□ 0.63
PDLIM3Q53GG5 ARHGAP29-202ENST00000370217 2043 ntTSL 1 (best) BASIC19■□□□□ 0.63
PDLIM3Q53GG5 LGR4-202ENST00000389858 5163 ntTSL 1 (best) BASIC19■□□□□ 0.63
PDLIM3Q53GG5 MRPS7-203ENST00000579002 1638 ntTSL 2 BASIC19■□□□□ 0.63
PDLIM3Q53GG5 RHOBTB3-206ENST00000506817 1432 ntTSL 2 BASIC19■□□□□ 0.63
PDLIM3Q53GG5 RUNX2-210ENST00000576263 2256 ntTSL 5 BASIC18.99■□□□□ 0.63
PDLIM3Q53GG5 FEZ2-203ENST00000379245 2097 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
PDLIM3Q53GG5 SPCS2P3-201ENST00000500401 656 ntBASIC18.99■□□□□ 0.63
PDLIM3Q53GG5 AC092666.2-201ENST00000613287 246 ntBASIC18.99■□□□□ 0.63
PDLIM3Q53GG5 EML2-209ENST00000587152 2763 ntAPPRIS ALT2 TSL 2 BASIC18.99■□□□□ 0.63
PDLIM3Q53GG5 RARA-202ENST00000394081 2285 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
PDLIM3Q53GG5 CASP9-201ENST00000333868 2019 ntAPPRIS P2 TSL 1 (best) BASIC18.98■□□□□ 0.63
PDLIM3Q53GG5 SAC3D1-201ENST00000398846 1566 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
PDLIM3Q53GG5 AP000802.1-201ENST00000500537 1934 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
PDLIM3Q53GG5 MTURN-201ENST00000324453 5937 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
PDLIM3Q53GG5 MOSPD3-204ENST00000424091 1115 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
PDLIM3Q53GG5 PFN2-211ENST00000489155 636 ntTSL 4 BASIC18.98■□□□□ 0.63
PDLIM3Q53GG5 RPL27A-206ENST00000530022 878 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
PDLIM3Q53GG5 RNF19B-203ENST00000373456 2560 ntAPPRIS P3 TSL 1 (best) BASIC18.98■□□□□ 0.63
PDLIM3Q53GG5 FJX1-201ENST00000317811 2450 ntAPPRIS P1 BASIC18.98■□□□□ 0.63
PDLIM3Q53GG5 ATAD3A-203ENST00000378756 2492 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
PDLIM3Q53GG5 ARSB-201ENST00000264914 5327 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
PDLIM3Q53GG5 ZDHHC3-203ENST00000342790 1336 ntTSL 5 BASIC18.98■□□□□ 0.63
PDLIM3Q53GG5 DGCR6-208ENST00000608842 1837 ntTSL 2 BASIC18.97■□□□□ 0.63
PDLIM3Q53GG5 GALNT8-202ENST00000433855 5977 ntTSL 2 BASIC18.97■□□□□ 0.63
PDLIM3Q53GG5 KLF15-201ENST00000296233 2574 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
PDLIM3Q53GG5 DENND4B-201ENST00000361217 5706 ntAPPRIS P2 TSL 1 (best) BASIC18.97■□□□□ 0.63
PDLIM3Q53GG5 SDS-201ENST00000257549 1606 ntAPPRIS P1 TSL 2 BASIC18.97■□□□□ 0.63
PDLIM3Q53GG5 GIT1-210ENST00000579937 2798 ntTSL 2 BASIC18.97■□□□□ 0.63
PDLIM3Q53GG5 ARRDC2-202ENST00000379656 2528 ntTSL 2 BASIC18.97■□□□□ 0.63
PDLIM3Q53GG5 PQLC3-204ENST00000441908 1784 ntTSL 2 BASIC18.97■□□□□ 0.63
PDLIM3Q53GG5 PVT1-212ENST00000521951 1535 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
PDLIM3Q53GG5 BEX3-202ENST00000372634 753 ntTSL 2 BASIC18.97■□□□□ 0.63
PDLIM3Q53GG5 TRAPPC5-202ENST00000426877 765 ntAPPRIS P1 TSL 2 BASIC18.97■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 138.6 ms