Protein–RNA interactions for Protein: P78423

CX3CL1, Fractalkine, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CX3CL1P78423 EGFL8-220ENST00000395512 1312 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CX3CL1P78423 IDNK-201ENST00000376417 511 ntTSL 5 BASIC18.61■□□□□ 0.57
CX3CL1P78423 IDNK-202ENST00000376419 692 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CX3CL1P78423 ENHO-201ENST00000399775 1082 ntAPPRIS P1 TSL 2 BASIC18.61■□□□□ 0.57
CX3CL1P78423 H2AFY-204ENST00000423969 924 ntTSL 2 BASIC18.61■□□□□ 0.57
CX3CL1P78423 ILDR2-208ENST00000529387 1238 ntTSL 5 BASIC18.61■□□□□ 0.57
CX3CL1P78423 GPRC5B-202ENST00000535671 1215 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
CX3CL1P78423 FP236240.1-201ENST00000619537 1116 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CX3CL1P78423 P4HA3-201ENST00000331597 2274 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CX3CL1P78423 RARA-204ENST00000394089 2024 ntAPPRIS P1 TSL 2 BASIC18.61■□□□□ 0.57
CX3CL1P78423 TNIP2-206ENST00000510267 2006 ntAPPRIS ALT2 TSL 2 BASIC18.61■□□□□ 0.57
CX3CL1P78423 BMP2K-204ENST00000502871 3195 ntAPPRIS P3 TSL 1 (best) BASIC18.61■□□□□ 0.57
CX3CL1P78423 PCMT1-202ENST00000367380 1628 ntTSL 2 BASIC18.6■□□□□ 0.57
CX3CL1P78423 PCMT1-211ENST00000544496 1628 ntTSL 2 BASIC18.6■□□□□ 0.57
CX3CL1P78423 CAPN10-207ENST00000391984 2644 ntAPPRIS P2 TSL 1 (best) BASIC18.6■□□□□ 0.57
CX3CL1P78423 DACT1-201ENST00000335867 2571 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
CX3CL1P78423 LDHB-203ENST00000396076 1538 ntAPPRIS P1 TSL 5 BASIC18.6■□□□□ 0.57
CX3CL1P78423 THRA-201ENST00000264637 2538 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
CX3CL1P78423 AC145124.1-201ENST00000528514 1361 ntTSL 2 BASIC18.6■□□□□ 0.57
CX3CL1P78423 CAPNS1-216ENST00000628306 1389 ntTSL 5 BASIC18.6■□□□□ 0.57
CX3CL1P78423 CARNMT1-201ENST00000376830 1012 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
CX3CL1P78423 SSX2IP-209ENST00000603677 1149 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
CX3CL1P78423 PVT1_1.1-201ENST00000615125 194 ntBASIC18.6■□□□□ 0.57
CX3CL1P78423 MIR6089-201ENST00000616698 64 ntBASIC18.6■□□□□ 0.57
CX3CL1P78423 MYCL-201ENST00000372815 1944 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
CX3CL1P78423 TARSL2-207ENST00000615656 2356 ntAPPRIS ALT2 TSL 5 BASIC18.6■□□□□ 0.57
CX3CL1P78423 ECEL1-202ENST00000409941 2322 ntAPPRIS ALT1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CX3CL1P78423 TMEM202-AS1-202ENST00000565181 2325 ntBASIC18.6■□□□□ 0.57
CX3CL1P78423 TMEM260-202ENST00000538838 1638 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
CX3CL1P78423 CCND3-223ENST00000616010 2047 ntTSL 5 BASIC18.59■□□□□ 0.57
CX3CL1P78423 TMEM64-203ENST00000458549 4997 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
CX3CL1P78423 MZT2B-201ENST00000281871 933 ntAPPRIS P3 TSL 1 (best) BASIC18.59■□□□□ 0.57
CX3CL1P78423 MZT2A-201ENST00000309451 624 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
CX3CL1P78423 BEX3-202ENST00000372634 753 ntTSL 2 BASIC18.59■□□□□ 0.57
CX3CL1P78423 MRPL23-202ENST00000381519 643 ntAPPRIS P1 TSL 3 BASIC18.59■□□□□ 0.57
CX3CL1P78423 MRPL23-205ENST00000397298 736 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
CX3CL1P78423 C9orf147-202ENST00000457681 561 ntTSL 2 BASIC18.59■□□□□ 0.57
CX3CL1P78423 RABGGTA-202ENST00000399409 2265 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
CX3CL1P78423 IRF2BP1-201ENST00000302165 2564 ntAPPRIS P1 BASIC18.59■□□□□ 0.57
CX3CL1P78423 LSR-205ENST00000427250 1606 ntTSL 2 BASIC18.59■□□□□ 0.57
CX3CL1P78423 FHL2-203ENST00000358129 1578 ntTSL 5 BASIC18.59■□□□□ 0.57
CX3CL1P78423 ST3GAL5-268ENST00000640982 2465 ntAPPRIS ALT2 TSL 5 BASIC18.59■□□□□ 0.57
CX3CL1P78423 NOCT-201ENST00000280614 1952 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
CX3CL1P78423 TMUB1-203ENST00000462940 1549 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
CX3CL1P78423 NFU1-203ENST00000410022 1467 ntAPPRIS P3 TSL 1 (best) BASIC18.58■□□□□ 0.57
CX3CL1P78423 AKT1-203ENST00000407796 2710 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
CX3CL1P78423 CADPS-219ENST00000612439 5455 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
CX3CL1P78423 ARHGEF9-210ENST00000623517 2143 ntTSL 2 BASIC18.58■□□□□ 0.57
CX3CL1P78423 PROSER2-202ENST00000379200 1232 ntAPPRIS ALT2 BASIC18.58■□□□□ 0.56
CX3CL1P78423 CFAP77-202ENST00000393215 901 ntAPPRIS ALT2 TSL 5 BASIC18.58■□□□□ 0.56
CX3CL1P78423 AC022616.5-201ENST00000518796 181 ntBASIC18.58■□□□□ 0.56
CX3CL1P78423 AC009511.2-201ENST00000545904 679 ntTSL 2 BASIC18.58■□□□□ 0.56
CX3CL1P78423 AC105219.1-201ENST00000531565 1963 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
CX3CL1P78423 SMOX-202ENST00000305958 2233 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
CX3CL1P78423 THRA-209ENST00000584985 2421 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
CX3CL1P78423 DNAJB11-201ENST00000265028 1688 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
CX3CL1P78423 EGFL8-219ENST00000333845 1310 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
CX3CL1P78423 PAOX-206ENST00000480071 1324 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
CX3CL1P78423 ARMC6-201ENST00000269932 2412 ntAPPRIS P1 TSL 5 BASIC18.57■□□□□ 0.56
CX3CL1P78423 RASGRP2-204ENST00000377487 642 ntTSL 2 BASIC18.57■□□□□ 0.56
CX3CL1P78423 VSTM2A-202ENST00000402613 1076 ntTSL 2 BASIC18.57■□□□□ 0.56
CX3CL1P78423 CDCA5-202ENST00000404147 1012 ntTSL 2 BASIC18.57■□□□□ 0.56
CX3CL1P78423 QDPR-202ENST00000428702 1278 ntTSL 2 BASIC18.57■□□□□ 0.56
CX3CL1P78423 HAGHL-205ENST00000561546 1041 ntTSL 2 BASIC18.57■□□□□ 0.56
CX3CL1P78423 SSSCA1-AS1-201ENST00000567594 614 ntBASIC18.57■□□□□ 0.56
CX3CL1P78423 SEC11C-204ENST00000587834 1202 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
CX3CL1P78423 POU2F2-215ENST00000560398 1788 ntTSL 5 BASIC18.57■□□□□ 0.56
CX3CL1P78423 R3HDM4-203ENST00000587975 1765 ntTSL 3 BASIC18.57■□□□□ 0.56
CX3CL1P78423 HDGFL2-210ENST00000621835 2255 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
CX3CL1P78423 CTDSPL-206ENST00000443503 4640 ntAPPRIS ALT1 TSL 1 (best) BASIC18.57■□□□□ 0.56
CX3CL1P78423 NKAIN3-202ENST00000523211 1988 ntAPPRIS P1 TSL 2 BASIC18.57■□□□□ 0.56
CX3CL1P78423 TCEA1-211ENST00000522635 1432 ntTSL 2 BASIC18.57■□□□□ 0.56
CX3CL1P78423 SRXN1-201ENST00000381962 2698 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
CX3CL1P78423 MYBL1-204ENST00000522677 5192 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
CX3CL1P78423 SLC22A18-201ENST00000312221 1628 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
CX3CL1P78423 GFOD1-204ENST00000603223 2388 ntTSL 2 BASIC18.56■□□□□ 0.56
CX3CL1P78423 APBA3-201ENST00000316757 2075 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
CX3CL1P78423 RARA-AS1-201ENST00000581080 1790 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
CX3CL1P78423 KRTAP5-5-201ENST00000399676 933 ntAPPRIS P1 BASIC18.56■□□□□ 0.56
CX3CL1P78423 WNT11-201ENST00000322563 1930 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
CX3CL1P78423 PPP1CC-206ENST00000550991 1882 ntTSL 2 BASIC18.56■□□□□ 0.56
CX3CL1P78423 BBC3-203ENST00000439096 1838 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
CX3CL1P78423 LSR-204ENST00000361790 2210 ntAPPRIS P4 TSL 1 (best) BASIC18.55■□□□□ 0.56
CX3CL1P78423 KCNQ5-208ENST00000414165 6236 ntTSL 5 BASIC18.55■□□□□ 0.56
CX3CL1P78423 SLBP-206ENST00000489418 1977 ntAPPRIS P2 TSL 1 (best) BASIC18.55■□□□□ 0.56
CX3CL1P78423 PREB-202ENST00000406567 1910 ntTSL 5 BASIC18.55■□□□□ 0.56
CX3CL1P78423 BSPRY-201ENST00000374183 2339 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
CX3CL1P78423 CCZ1B-201ENST00000316731 2885 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
CX3CL1P78423 FEZ2-203ENST00000379245 2097 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
CX3CL1P78423 C5orf38-202ENST00000397835 681 ntAPPRIS ALT2 TSL 5 BASIC18.55■□□□□ 0.56
CX3CL1P78423 CT47A7-201ENST00000434883 1288 ntAPPRIS P1 TSL 2 BASIC18.55■□□□□ 0.56
CX3CL1P78423 NDEL1-219ENST00000585098 454 ntTSL 3 BASIC18.55■□□□□ 0.56
CX3CL1P78423 P3H3-201ENST00000290510 2632 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
CX3CL1P78423 RIMKLB-205ENST00000535829 2236 ntAPPRIS P1 TSL 2 BASIC18.55■□□□□ 0.56
CX3CL1P78423 NR6A1-201ENST00000344523 1846 ntAPPRIS ALT2 TSL 5 BASIC18.55■□□□□ 0.56
CX3CL1P78423 ADAD2-202ENST00000315906 1995 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
CX3CL1P78423 GALNT12-201ENST00000375011 2735 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
CX3CL1P78423 POLE2-201ENST00000216367 1776 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
CX3CL1P78423 HADH-203ENST00000505878 1719 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
CX3CL1P78423 AC090877.2-201ENST00000558441 1738 ntBASIC18.54■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 43.1 ms