Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 USP2-204ENST00000525735 1704 ntAPPRIS ALT1 TSL 1 (best) BASIC44.86■■■■■ 4.77
SHROOM4Q9ULL8 PARL-206ENST00000435888 1098 ntTSL 5 BASIC44.86■■■■■ 4.77
SHROOM4Q9ULL8 H2AFB1-201ENST00000620016 587 ntAPPRIS P1 BASIC44.86■■■■■ 4.77
SHROOM4Q9ULL8 RDH14-201ENST00000381249 1587 ntAPPRIS P1 TSL 1 (best) BASIC44.86■■■■■ 4.77
SHROOM4Q9ULL8 MADCAM1-202ENST00000346144 1309 ntAPPRIS ALT2 TSL 1 (best) BASIC44.86■■■■■ 4.77
SHROOM4Q9ULL8 GPR160-201ENST00000355897 2039 ntAPPRIS P1 TSL 1 (best) BASIC44.86■■■■■ 4.77
SHROOM4Q9ULL8 BSCL2-205ENST00000403550 1693 ntAPPRIS P3 TSL 5 BASIC44.85■■■■■ 4.77
SHROOM4Q9ULL8 AC105265.2-201ENST00000467189 838 ntBASIC44.85■■■■■ 4.77
SHROOM4Q9ULL8 AC092343.1-201ENST00000500224 729 ntTSL 3 BASIC44.85■■■■■ 4.77
SHROOM4Q9ULL8 RPRD1A-207ENST00000588737 1264 ntTSL 2 BASIC44.85■■■■■ 4.77
SHROOM4Q9ULL8 HOXA11-AS1_1.1-201ENST00000613939 98 ntBASIC44.85■■■■■ 4.77
SHROOM4Q9ULL8 ZIC2-201ENST00000376335 2983 ntAPPRIS P1 TSL 1 (best) BASIC44.85■■■■■ 4.77
SHROOM4Q9ULL8 SYT8-201ENST00000341958 1556 ntAPPRIS ALT2 TSL 5 BASIC44.85■■■■■ 4.77
SHROOM4Q9ULL8 HDGF-201ENST00000357325 2380 ntAPPRIS P1 TSL 1 (best) BASIC44.85■■■■■ 4.77
SHROOM4Q9ULL8 AC097381.1-201ENST00000429019 1296 ntBASIC44.85■■■■■ 4.77
SHROOM4Q9ULL8 H1FX-AS1-204ENST00000511998 917 ntTSL 5 BASIC44.85■■■■■ 4.77
SHROOM4Q9ULL8 LYPD2-201ENST00000359228 594 ntAPPRIS P1 TSL 1 (best) BASIC44.84■■■■■ 4.77
SHROOM4Q9ULL8 AL136162.1-201ENST00000607711 1078 ntBASIC44.83■■■■■ 4.77
SHROOM4Q9ULL8 KRTAP5-4-202ENST00000616115 660 ntAPPRIS ALT2 TSL 5 BASIC44.83■■■■■ 4.77
SHROOM4Q9ULL8 CCDC107-205ENST00000421582 1324 ntAPPRIS ALT2 TSL 2 BASIC44.83■■■■■ 4.77
SHROOM4Q9ULL8 CROT-202ENST00000412227 1213 ntTSL 1 (best) BASIC44.82■■■■■ 4.77
SHROOM4Q9ULL8 SLC35A2-209ENST00000452555 1563 ntTSL 2 BASIC44.82■■■■■ 4.77
SHROOM4Q9ULL8 AC092902.2-206ENST00000625484 846 ntTSL 5 BASIC44.82■■■■■ 4.77
SHROOM4Q9ULL8 SHISA9-205ENST00000639941 1135 ntAPPRIS ALT2 TSL 5 BASIC44.82■■■■■ 4.77
SHROOM4Q9ULL8 RASSF5-204ENST00000580449 1932 ntTSL 1 (best) BASIC44.82■■■■■ 4.77
SHROOM4Q9ULL8 TMEM203-201ENST00000343666 1557 ntAPPRIS P1 BASIC44.81■■■■■ 4.76
SHROOM4Q9ULL8 AC096887.2-201ENST00000623443 1957 ntBASIC44.8■■■■■ 4.76
SHROOM4Q9ULL8 SDSL-202ENST00000403593 1449 ntAPPRIS P1 TSL 1 (best) BASIC44.8■■■■■ 4.76
SHROOM4Q9ULL8 TMUB1-202ENST00000392818 1563 ntAPPRIS P1 TSL 1 (best) BASIC44.8■■■■■ 4.76
SHROOM4Q9ULL8 NKX2-8-201ENST00000258829 1261 ntAPPRIS P1 TSL 1 (best) BASIC44.79■■■■■ 4.76
SHROOM4Q9ULL8 FAIM-202ENST00000360570 1157 ntAPPRIS ALT1 TSL 3 BASIC44.79■■■■■ 4.76
SHROOM4Q9ULL8 RAB20-201ENST00000267328 1518 ntAPPRIS P1 TSL 1 (best) BASIC44.79■■■■■ 4.76
SHROOM4Q9ULL8 STOML2-201ENST00000356493 1278 ntAPPRIS P1 TSL 1 (best) BASIC44.78■■■■■ 4.76
SHROOM4Q9ULL8 HSPE1-203ENST00000409729 478 ntTSL 2 BASIC44.78■■■■■ 4.76
SHROOM4Q9ULL8 MCRIP1-210ENST00000576431 577 ntTSL 5 BASIC44.78■■■■■ 4.76
SHROOM4Q9ULL8 GAK-223ENST00000628912 497 ntTSL 5 BASIC44.78■■■■■ 4.76
SHROOM4Q9ULL8 AL359317.1-201ENST00000556316 578 ntTSL 4 BASIC44.78■■■■■ 4.76
SHROOM4Q9ULL8 UNC93B3-201ENST00000308076 687 ntBASIC44.77■■■■■ 4.76
SHROOM4Q9ULL8 SNRNP70-206ENST00000598441 1574 ntAPPRIS P1 TSL 1 (best) BASIC44.76■■■■■ 4.76
SHROOM4Q9ULL8 POLE2-201ENST00000216367 1776 ntAPPRIS P1 TSL 1 (best) BASIC44.76■■■■■ 4.76
SHROOM4Q9ULL8 AL355987.3-201ENST00000456614 735 ntAPPRIS P1 TSL 4 BASIC44.75■■■■■ 4.75
SHROOM4Q9ULL8 AC019163.1-201ENST00000512634 610 ntTSL 2 BASIC44.75■■■■■ 4.75
SHROOM4Q9ULL8 AL355001.2-201ENST00000620617 1191 ntBASIC44.75■■■■■ 4.75
SHROOM4Q9ULL8 CCDC166-201ENST00000542437 1320 ntAPPRIS P1 TSL 2 BASIC44.75■■■■■ 4.75
SHROOM4Q9ULL8 EEF1D-201ENST00000317198 1458 ntAPPRIS ALT2 TSL 5 BASIC44.75■■■■■ 4.75
SHROOM4Q9ULL8 GSK3A-201ENST00000222330 2188 ntAPPRIS P2 TSL 1 (best) BASIC44.74■■■■■ 4.75
SHROOM4Q9ULL8 P2RX4-203ENST00000359949 1836 ntTSL 5 BASIC44.74■■■■■ 4.75
SHROOM4Q9ULL8 CDKN2A-206ENST00000494262 989 ntTSL 3 BASIC44.74■■■■■ 4.75
SHROOM4Q9ULL8 PEX26-202ENST00000399744 1672 ntAPPRIS P1 TSL 1 (best) BASIC44.74■■■■■ 4.75
SHROOM4Q9ULL8 PAOX-203ENST00000357296 1633 ntTSL 1 (best) BASIC44.74■■■■■ 4.75
SHROOM4Q9ULL8 SUMF1-202ENST00000383843 1447 ntTSL 2 BASIC44.73■■■■■ 4.75
SHROOM4Q9ULL8 MIR939-201ENST00000401314 82 ntBASIC44.73■■■■■ 4.75
SHROOM4Q9ULL8 PICSAR-201ENST00000615826 733 ntTSL 1 (best) BASIC44.73■■■■■ 4.75
SHROOM4Q9ULL8 AQP1-202ENST00000409611 1140 ntTSL 1 (best) BASIC44.72■■■■■ 4.75
SHROOM4Q9ULL8 CLTA-204ENST00000433436 1235 ntAPPRIS ALT1 TSL 1 (best) BASIC44.72■■■■■ 4.75
SHROOM4Q9ULL8 CLTA-209ENST00000538225 1181 ntTSL 2 BASIC44.72■■■■■ 4.75
SHROOM4Q9ULL8 CLTA-210ENST00000540080 989 ntTSL 2 BASIC44.72■■■■■ 4.75
SHROOM4Q9ULL8 ZNF74-204ENST00000405993 1839 ntAPPRIS ALT2 TSL 5 BASIC44.72■■■■■ 4.75
SHROOM4Q9ULL8 LCNL1-201ENST00000408973 1839 ntAPPRIS P1 TSL 2 BASIC44.72■■■■■ 4.75
SHROOM4Q9ULL8 HTRA1-201ENST00000368984 2120 ntAPPRIS P1 TSL 1 (best) BASIC44.72■■■■■ 4.75
SHROOM4Q9ULL8 AL162430.1-201ENST00000480705 870 ntBASIC44.72■■■■■ 4.75
SHROOM4Q9ULL8 SERGEF-219ENST00000532265 1124 ntTSL 2 BASIC44.72■■■■■ 4.75
SHROOM4Q9ULL8 THRA-204ENST00000546243 1909 ntAPPRIS P1 TSL 2 BASIC44.71■■■■■ 4.75
SHROOM4Q9ULL8 FAIM-203ENST00000393034 927 ntAPPRIS P3 TSL 2 BASIC44.71■■■■■ 4.75
SHROOM4Q9ULL8 LYL1-201ENST00000264824 1490 ntAPPRIS P1 TSL 1 (best) BASIC44.7■■■■■ 4.75
SHROOM4Q9ULL8 SPOCK3-221ENST00000512648 1456 ntTSL 1 (best) BASIC44.7■■■■■ 4.75
SHROOM4Q9ULL8 VIPR2-203ENST00000402066 1926 ntAPPRIS ALT2 TSL 5 BASIC44.7■■■■■ 4.75
SHROOM4Q9ULL8 AC116614.1-201ENST00000456949 539 ntTSL 2 BASIC44.7■■■■■ 4.75
SHROOM4Q9ULL8 AC092807.3-205ENST00000467666 531 ntTSL 3 BASIC44.7■■■■■ 4.75
SHROOM4Q9ULL8 C1QTNF1-206ENST00000579760 1672 ntAPPRIS P1 TSL 1 (best) BASIC44.69■■■■■ 4.74
SHROOM4Q9ULL8 AP001330.3-201ENST00000520123 633 ntBASIC44.69■■■■■ 4.74
SHROOM4Q9ULL8 EDA-209ENST00000525810 843 ntTSL 1 (best) BASIC44.69■■■■■ 4.74
SHROOM4Q9ULL8 PDSS1-201ENST00000376215 1626 ntAPPRIS P1 TSL 1 (best) BASIC44.69■■■■■ 4.74
SHROOM4Q9ULL8 AF131216.4-201ENST00000638924 1588 ntBASIC44.69■■■■■ 4.74
SHROOM4Q9ULL8 RAB40C-204ENST00000538492 2569 ntAPPRIS P1 TSL 2 BASIC44.68■■■■■ 4.74
SHROOM4Q9ULL8 AC024257.2-201ENST00000549699 147 ntBASIC44.67■■■■■ 4.74
SHROOM4Q9ULL8 AL121749.1-202ENST00000609313 2153 ntBASIC44.67■■■■■ 4.74
SHROOM4Q9ULL8 SERF1A-202ENST00000354833 1889 ntTSL 1 (best) BASIC44.67■■■■■ 4.74
SHROOM4Q9ULL8 SERF1B-201ENST00000380750 1889 ntTSL 1 (best) BASIC44.67■■■■■ 4.74
SHROOM4Q9ULL8 MEIS3-204ENST00000558555 1715 ntAPPRIS ALT2 TSL 5 BASIC44.67■■■■■ 4.74
SHROOM4Q9ULL8 TST-202ENST00000403892 1797 ntAPPRIS P1 TSL 1 (best) BASIC44.66■■■■■ 4.74
SHROOM4Q9ULL8 TTBK2-205ENST00000567274 1777 ntTSL 5 BASIC44.66■■■■■ 4.74
SHROOM4Q9ULL8 PLD4-205ENST00000553861 667 ntTSL 2 BASIC44.66■■■■■ 4.74
SHROOM4Q9ULL8 ATP6V0A2-209ENST00000613625 1620 ntTSL 1 (best) BASIC44.65■■■■■ 4.74
SHROOM4Q9ULL8 C9orf40-201ENST00000376854 2327 ntAPPRIS P1 TSL 1 (best) BASIC44.65■■■■■ 4.74
SHROOM4Q9ULL8 AQP10-201ENST00000324978 1791 ntAPPRIS P1 TSL 1 (best) BASIC44.65■■■■■ 4.74
SHROOM4Q9ULL8 GGA1-204ENST00000381756 2107 ntTSL 1 (best) BASIC44.64■■■■■ 4.74
SHROOM4Q9ULL8 ZNF768-201ENST00000380412 2315 ntAPPRIS P2 TSL 1 (best) BASIC44.64■■■■■ 4.74
SHROOM4Q9ULL8 TSPAN4-203ENST00000397397 1423 ntAPPRIS P1 TSL 1 (best) BASIC44.64■■■■■ 4.74
SHROOM4Q9ULL8 FGF8-204ENST00000347978 823 ntTSL 1 (best) BASIC44.64■■■■■ 4.74
SHROOM4Q9ULL8 AF213884.3-201ENST00000563833 479 ntBASIC44.64■■■■■ 4.74
SHROOM4Q9ULL8 FAM222B-213ENST00000583522 556 ntTSL 2 BASIC44.64■■■■■ 4.74
SHROOM4Q9ULL8 PRSS22-201ENST00000161006 1386 ntAPPRIS P1 TSL 1 (best) BASIC44.64■■■■■ 4.74
SHROOM4Q9ULL8 KAT8-202ENST00000448516 1789 ntTSL 1 (best) BASIC44.64■■■■■ 4.74
SHROOM4Q9ULL8 RCCD1-203ENST00000555155 1871 ntAPPRIS ALT1 TSL 5 BASIC44.64■■■■■ 4.74
SHROOM4Q9ULL8 LYPLA1-215ENST00000618914 2482 ntTSL 5 BASIC44.63■■■■■ 4.74
SHROOM4Q9ULL8 LINC01970-201ENST00000581489 1810 ntTSL 1 (best) BASIC44.62■■■■■ 4.73
SHROOM4Q9ULL8 SDSL-201ENST00000345635 1397 ntAPPRIS P1 TSL 1 (best) BASIC44.62■■■■■ 4.73
SHROOM4Q9ULL8 HNRNPD-203ENST00000353341 1585 ntAPPRIS ALT1 TSL 1 (best) BASIC44.62■■■■■ 4.73
SHROOM4Q9ULL8 ARTN-203ENST00000414809 1943 ntAPPRIS P4 TSL 3 BASIC44.61■■■■■ 4.73
Retrieved 100 of 98,524 protein–RNA pairs in 178.3 ms