Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 NAGLU-201ENST00000225927 2544 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
HLA-DMBP28068 CDKN3-202ENST00000335183 893 ntAPPRIS P2 TSL 1 (best) BASIC17.7■□□□□ 0.42
HLA-DMBP28068 RIPPLY2-202ENST00000369689 664 ntAPPRIS P2 TSL 1 (best) BASIC17.7■□□□□ 0.42
HLA-DMBP28068 GFER-205ENST00000569451 517 ntTSL 5 BASIC17.7■□□□□ 0.42
HLA-DMBP28068 CDKN3-211ENST00000611205 874 ntAPPRIS ALT2 TSL 5 BASIC17.7■□□□□ 0.42
HLA-DMBP28068 FOXP4-203ENST00000373060 5948 ntTSL 5 BASIC17.7■□□□□ 0.42
HLA-DMBP28068 FOXP4-204ENST00000373063 5910 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
HLA-DMBP28068 CCND3-223ENST00000616010 2047 ntTSL 5 BASIC17.7■□□□□ 0.42
HLA-DMBP28068 AC006455.5-202ENST00000615248 2284 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
HLA-DMBP28068 PGF-203ENST00000553716 1699 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
HLA-DMBP28068 SIN3B-209ENST00000596802 2556 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
HLA-DMBP28068 GDI1-204ENST00000447750 2474 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
HLA-DMBP28068 RASL10A-201ENST00000216101 1490 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
HLA-DMBP28068 VPS53-211ENST00000571805 2356 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
HLA-DMBP28068 TTLL11-202ENST00000373776 2012 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
HLA-DMBP28068 RARA-203ENST00000394086 2008 ntTSL 2 BASIC17.69■□□□□ 0.42
HLA-DMBP28068 ZFP91-CNTF-201ENST00000389919 2319 ntAPPRIS P5 TSL 2 BASIC17.69■□□□□ 0.42
HLA-DMBP28068 TRAP1-202ENST00000538171 2052 ntTSL 2 BASIC17.69■□□□□ 0.42
HLA-DMBP28068 PSMG4-206ENST00000438998 838 ntAPPRIS P1 TSL 2 BASIC17.69■□□□□ 0.42
HLA-DMBP28068 GNB1-210ENST00000615252 3048 ntTSL 5 BASIC17.69■□□□□ 0.42
HLA-DMBP28068 SLC35A2-209ENST00000452555 1563 ntTSL 2 BASIC17.69■□□□□ 0.42
HLA-DMBP28068 SLC35B2-204ENST00000537814 1715 ntTSL 2 BASIC17.69■□□□□ 0.42
HLA-DMBP28068 RBMXL2-201ENST00000306904 1874 ntAPPRIS P1 BASIC17.69■□□□□ 0.42
HLA-DMBP28068 ZBTB45-205ENST00000600990 2159 ntAPPRIS P1 TSL 5 BASIC17.69■□□□□ 0.42
HLA-DMBP28068 LDHB-203ENST00000396076 1538 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
HLA-DMBP28068 RFC2-201ENST00000055077 1695 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
HLA-DMBP28068 PARL-202ENST00000317096 1414 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
HLA-DMBP28068 ENDOG-201ENST00000372642 1172 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
HLA-DMBP28068 ABCB10P4-201ENST00000566803 2184 ntBASIC17.68■□□□□ 0.42
HLA-DMBP28068 AL022341.2-201ENST00000573609 1417 ntTSL 3 BASIC17.68■□□□□ 0.42
HLA-DMBP28068 OPRD1-202ENST00000621425 1217 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
HLA-DMBP28068 ATG16L2-205ENST00000534905 1614 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
HLA-DMBP28068 C1QL2-201ENST00000272520 2043 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
HLA-DMBP28068 CTSF-201ENST00000310325 2035 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
HLA-DMBP28068 AC009831.1-201ENST00000580420 1582 ntBASIC17.67■□□□□ 0.42
HLA-DMBP28068 AC141586.4-201ENST00000624558 1573 ntBASIC17.67■□□□□ 0.42
HLA-DMBP28068 FUT11-201ENST00000372841 2056 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
HLA-DMBP28068 FOXO3B-201ENST00000395675 1928 ntBASIC17.67■□□□□ 0.42
HLA-DMBP28068 PPP4C-201ENST00000279387 1407 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
HLA-DMBP28068 HLA-L-211ENST00000482052 1765 ntBASIC17.67■□□□□ 0.42
HLA-DMBP28068 RBFA-201ENST00000262197 1219 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
HLA-DMBP28068 U85056.1-201ENST00000616429 682 ntBASIC17.67■□□□□ 0.42
HLA-DMBP28068 DENND5A-201ENST00000328194 5031 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
HLA-DMBP28068 HMX2-201ENST00000339992 1628 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
HLA-DMBP28068 GPR160-201ENST00000355897 2039 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
HLA-DMBP28068 RAX-201ENST00000256852 2935 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
HLA-DMBP28068 SNX18-201ENST00000326277 2063 ntTSL 2 BASIC17.67■□□□□ 0.42
HLA-DMBP28068 PANK2-201ENST00000316562 2280 ntAPPRIS P2 TSL 1 (best) BASIC17.67■□□□□ 0.42
HLA-DMBP28068 CAPNS1-216ENST00000628306 1389 ntTSL 5 BASIC17.66■□□□□ 0.42
HLA-DMBP28068 RABL6-204ENST00000371671 1580 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
HLA-DMBP28068 UBE2D2-205ENST00000505548 1113 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
HLA-DMBP28068 KCTD5-202ENST00000564195 774 ntTSL 5 BASIC17.66■□□□□ 0.42
HLA-DMBP28068 SAP25-204ENST00000622764 1031 ntAPPRIS ALT2 TSL 5 BASIC17.66■□□□□ 0.42
HLA-DMBP28068 AC012354.3-201ENST00000623734 483 ntBASIC17.66■□□□□ 0.42
HLA-DMBP28068 TMEM120A-214ENST00000493111 1456 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
HLA-DMBP28068 FBXW4-201ENST00000331272 2483 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
HLA-DMBP28068 NAT14-201ENST00000205194 1536 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
HLA-DMBP28068 FZD8-201ENST00000374694 4030 ntAPPRIS P1 BASIC17.66■□□□□ 0.42
HLA-DMBP28068 NKAIN3-202ENST00000523211 1988 ntAPPRIS P1 TSL 2 BASIC17.66■□□□□ 0.42
HLA-DMBP28068 NKX2-3-202ENST00000622383 1986 ntTSL 5 BASIC17.66■□□□□ 0.42
HLA-DMBP28068 BTBD7-205ENST00000554565 2697 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
HLA-DMBP28068 PPP2R2C-203ENST00000382599 1807 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
HLA-DMBP28068 ZNF263-204ENST00000573578 1636 ntTSL 5 BASIC17.65■□□□□ 0.42
HLA-DMBP28068 TBL1X-201ENST00000217964 5871 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
HLA-DMBP28068 AC005540.1-201ENST00000413911 919 ntTSL 3 BASIC17.65■□□□□ 0.42
HLA-DMBP28068 AC133552.2-201ENST00000619106 1032 ntBASIC17.65■□□□□ 0.42
HLA-DMBP28068 AGAP3-201ENST00000335367 2675 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
HLA-DMBP28068 ZNF503-AS2-201ENST00000425916 2026 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
HLA-DMBP28068 KRT72-203ENST00000537672 1813 ntAPPRIS P1 TSL 2 BASIC17.65■□□□□ 0.42
HLA-DMBP28068 IRF2BP1-201ENST00000302165 2564 ntAPPRIS P1 BASIC17.65■□□□□ 0.42
HLA-DMBP28068 MYO10-205ENST00000507288 1677 ntTSL 1 (best) BASIC17.64■□□□□ 0.42
HLA-DMBP28068 HIRA-202ENST00000340170 3395 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
HLA-DMBP28068 PPP2R2D-201ENST00000455566 5738 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
HLA-DMBP28068 NTHL1-201ENST00000219066 1067 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
HLA-DMBP28068 SDF2L1-201ENST00000248958 865 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
HLA-DMBP28068 MAPK3-203ENST00000395199 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.41
HLA-DMBP28068 MANF-204ENST00000528157 1153 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
HLA-DMBP28068 SNX5-219ENST00000606602 885 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
HLA-DMBP28068 PEX5-205ENST00000420616 2477 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
HLA-DMBP28068 NRXN1-205ENST00000401710 2873 ntTSL 5 BASIC17.64■□□□□ 0.41
HLA-DMBP28068 NAT8L-202ENST00000423729 5870 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
HLA-DMBP28068 KLC1-205ENST00000380038 2322 ntTSL 2 BASIC17.63■□□□□ 0.41
HLA-DMBP28068 CPNE2-202ENST00000535318 2316 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
HLA-DMBP28068 BDH1-207ENST00000441275 1605 ntTSL 5 BASIC17.63■□□□□ 0.41
HLA-DMBP28068 FGD5-AS1-204ENST00000430166 1184 ntTSL 2 BASIC17.63■□□□□ 0.41
HLA-DMBP28068 HES4-204ENST00000484667 667 ntTSL 3 BASIC17.63■□□□□ 0.41
HLA-DMBP28068 TRIM52-AS1-202ENST00000507434 672 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
HLA-DMBP28068 BMP6-201ENST00000283147 2780 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
HLA-DMBP28068 PSMG3-202ENST00000288607 1391 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
HLA-DMBP28068 ZMYND19-201ENST00000298585 1375 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
HLA-DMBP28068 LURAP1L-201ENST00000319264 1753 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
HLA-DMBP28068 RARA-AS1-201ENST00000581080 1790 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
HLA-DMBP28068 RFNG-201ENST00000310496 1828 ntAPPRIS P1 TSL 2 BASIC17.63■□□□□ 0.41
HLA-DMBP28068 SIAH2-201ENST00000312960 2517 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
HLA-DMBP28068 PHC2-202ENST00000373418 2550 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
HLA-DMBP28068 DACT3-202ENST00000391916 2834 ntAPPRIS P1 TSL 5 BASIC17.62■□□□□ 0.41
HLA-DMBP28068 MAL2-204ENST00000614891 2818 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
HLA-DMBP28068 GFOD1-204ENST00000603223 2388 ntTSL 2 BASIC17.62■□□□□ 0.41
HLA-DMBP28068 TSPAN4-202ENST00000397396 1332 ntTSL 5 BASIC17.62■□□□□ 0.41
HLA-DMBP28068 RYK-209ENST00000623711 2934 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 140.8 ms