Protein–RNA interactions for Protein: O75445

USH2A, Usherin, humanhuman

Predictions only

Length 5,202 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USH2AO75445 IL15RA-215ENST00000528354 1037 ntTSL 2 BASIC10.66□□□□□ -0.7
USH2AO75445 NDUFV2-AS1-201ENST00000582375 770 ntTSL 2 BASIC10.66□□□□□ -0.7
USH2AO75445 IL15RA-220ENST00000620345 1115 ntAPPRIS ALT2 TSL 1 (best) BASIC10.66□□□□□ -0.7
USH2AO75445 IL15RA-221ENST00000620865 1037 ntAPPRIS ALT2 TSL 1 (best) BASIC10.66□□□□□ -0.7
USH2AO75445 IL15RA-222ENST00000622442 1160 ntAPPRIS ALT2 TSL 1 (best) BASIC10.66□□□□□ -0.7
USH2AO75445 FTCD-204ENST00000397748 1955 ntTSL 1 (best) BASIC10.66□□□□□ -0.7
USH2AO75445 HOXB3-212ENST00000498678 2196 ntAPPRIS P1 TSL 2 BASIC10.65□□□□□ -0.7
USH2AO75445 TFEB-204ENST00000373033 2331 ntAPPRIS P1 TSL 1 (best) BASIC10.65□□□□□ -0.7
USH2AO75445 ST7-AS1-201ENST00000456775 1889 ntBASIC10.65□□□□□ -0.7
USH2AO75445 TMEM150A-201ENST00000306353 1484 ntTSL 1 (best) BASIC10.65□□□□□ -0.7
USH2AO75445 ME3-201ENST00000323418 1068 ntTSL 5 BASIC10.65□□□□□ -0.7
USH2AO75445 MFSD14C-201ENST00000375223 619 ntAPPRIS ALT2 TSL 5 BASIC10.65□□□□□ -0.7
USH2AO75445 IZUMO4-203ENST00000395307 944 ntAPPRIS P3 TSL 1 (best) BASIC10.65□□□□□ -0.7
USH2AO75445 ZBTB7A-202ENST00000601588 2083 ntAPPRIS P1 TSL 1 (best) BASIC10.65□□□□□ -0.7
USH2AO75445 PHF11-202ENST00000378319 1359 ntAPPRIS P3 TSL 1 (best) BASIC10.65□□□□□ -0.71
USH2AO75445 TYMP-203ENST00000395680 1608 ntAPPRIS P3 TSL 1 (best) BASIC10.65□□□□□ -0.71
USH2AO75445 TYMP-204ENST00000395681 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC10.65□□□□□ -0.71
USH2AO75445 ZDHHC16-205ENST00000370846 1280 ntTSL 3 BASIC10.64□□□□□ -0.71
USH2AO75445 LINC01167-201ENST00000423232 604 ntTSL 3 BASIC10.64□□□□□ -0.71
USH2AO75445 AC123595.1-201ENST00000440769 1046 ntBASIC10.64□□□□□ -0.71
USH2AO75445 TMEM70-203ENST00000517439 617 ntTSL 2 BASIC10.64□□□□□ -0.71
USH2AO75445 SNX5-217ENST00000606557 1087 ntBASIC10.64□□□□□ -0.71
USH2AO75445 GFRA4-201ENST00000290417 1427 ntAPPRIS ALT2 TSL 1 (best) BASIC10.64□□□□□ -0.71
USH2AO75445 TNFRSF25-205ENST00000377782 1632 ntAPPRIS P4 TSL 1 (best) BASIC10.64□□□□□ -0.71
USH2AO75445 PTOV1-220ENST00000601675 1587 ntAPPRIS P1 TSL 1 (best) BASIC10.64□□□□□ -0.71
USH2AO75445 CENPH-201ENST00000283006 1389 ntAPPRIS P1 TSL 1 (best) BASIC10.64□□□□□ -0.71
USH2AO75445 TAF9-201ENST00000217893 1283 ntAPPRIS P2 TSL 1 (best) BASIC10.64□□□□□ -0.71
USH2AO75445 SUSD3-202ENST00000375472 1195 ntAPPRIS P3 TSL 1 (best) BASIC10.64□□□□□ -0.71
USH2AO75445 Z97986.1-201ENST00000565879 476 ntTSL 5 BASIC10.64□□□□□ -0.71
USH2AO75445 AC008687.6-201ENST00000596318 630 ntBASIC10.64□□□□□ -0.71
USH2AO75445 NEUROG2-201ENST00000313341 2287 ntAPPRIS P1 TSL 1 (best) BASIC10.64□□□□□ -0.71
USH2AO75445 C1orf35-201ENST00000272139 1427 ntAPPRIS P1 TSL 1 (best) BASIC10.64□□□□□ -0.71
USH2AO75445 CTAG2-202ENST00000369585 748 ntAPPRIS P1 TSL 1 (best) BASIC10.64□□□□□ -0.71
USH2AO75445 ASPSCR1-211ENST00000581647 720 ntTSL 2 BASIC10.64□□□□□ -0.71
USH2AO75445 AC104771.1-201ENST00000603335 964 ntBASIC10.64□□□□□ -0.71
USH2AO75445 RAB43-208ENST00000615093 783 ntTSL 5 BASIC10.64□□□□□ -0.71
USH2AO75445 RAB20-201ENST00000267328 1518 ntAPPRIS P1 TSL 1 (best) BASIC10.64□□□□□ -0.71
USH2AO75445 PDPK1-203ENST00000389224 2416 ntTSL 2 BASIC10.63□□□□□ -0.71
USH2AO75445 TRAF4-205ENST00000444415 1456 ntTSL 5 BASIC10.63□□□□□ -0.71
USH2AO75445 AL391650.1-201ENST00000448923 1468 ntAPPRIS P1 TSL 2 BASIC10.63□□□□□ -0.71
USH2AO75445 SNAI3-AS1-204ENST00000567997 2048 ntBASIC10.63□□□□□ -0.71
USH2AO75445 CDK2AP1-201ENST00000261692 1625 ntAPPRIS P1 TSL 1 (best) BASIC10.63□□□□□ -0.71
USH2AO75445 PTMA-205ENST00000410064 814 ntTSL 2 BASIC10.63□□□□□ -0.71
USH2AO75445 MAGI2-AS3-209ENST00000448195 774 ntTSL 3 BASIC10.63□□□□□ -0.71
USH2AO75445 EMID1-202ENST00000404755 2049 ntTSL 5 BASIC10.63□□□□□ -0.71
USH2AO75445 TMEM121-201ENST00000392519 1532 ntAPPRIS P1 TSL 1 (best) BASIC10.63□□□□□ -0.71
USH2AO75445 AC233992.3-201ENST00000607491 485 ntBASIC10.63□□□□□ -0.71
USH2AO75445 COMMD5-201ENST00000305103 1373 ntAPPRIS P1 TSL 1 (best) BASIC10.63□□□□□ -0.71
USH2AO75445 KLC3-201ENST00000391946 1780 ntAPPRIS P2 TSL 1 (best) BASIC10.63□□□□□ -0.71
USH2AO75445 TMEM41B-205ENST00000533723 723 ntTSL 2 BASIC10.62□□□□□ -0.71
USH2AO75445 VPS53-216ENST00000574029 585 ntTSL 4 BASIC10.62□□□□□ -0.71
USH2AO75445 TRAPPC3-208ENST00000616074 1114 ntTSL 5 BASIC10.62□□□□□ -0.71
USH2AO75445 AC241377.3-202ENST00000626088 1088 ntBASIC10.62□□□□□ -0.71
USH2AO75445 AC241585.3-202ENST00000628937 1088 ntBASIC10.62□□□□□ -0.71
USH2AO75445 DHRS13-201ENST00000378895 1921 ntAPPRIS P1 TSL 1 (best) BASIC10.62□□□□□ -0.71
USH2AO75445 POLE2-201ENST00000216367 1776 ntAPPRIS P1 TSL 1 (best) BASIC10.62□□□□□ -0.71
USH2AO75445 AC068580.1-201ENST00000446489 252 ntTSL 3 BASIC10.62□□□□□ -0.71
USH2AO75445 ATOX1-207ENST00000524142 749 ntAPPRIS P1 TSL 5 BASIC10.62□□□□□ -0.71
USH2AO75445 SIRT3-215ENST00000532956 1235 ntTSL 2 BASIC10.62□□□□□ -0.71
USH2AO75445 TSEN15-207ENST00000533373 618 ntTSL 2 BASIC10.62□□□□□ -0.71
USH2AO75445 KRT18P61-201ENST00000585825 1298 ntBASIC10.62□□□□□ -0.71
USH2AO75445 AES-207ENST00000586839 942 ntTSL 1 (best) BASIC10.62□□□□□ -0.71
USH2AO75445 AC008764.7-201ENST00000593779 1081 ntBASIC10.62□□□□□ -0.71
USH2AO75445 SAP25-203ENST00000614631 987 ntAPPRIS P2 TSL 2 BASIC10.62□□□□□ -0.71
USH2AO75445 ZNF74-204ENST00000405993 1839 ntAPPRIS ALT2 TSL 5 BASIC10.62□□□□□ -0.71
USH2AO75445 PWWP2B-201ENST00000305233 2651 ntAPPRIS P1 TSL 1 (best) BASIC10.62□□□□□ -0.71
USH2AO75445 KRT18P10-201ENST00000388836 1287 ntBASIC10.61□□□□□ -0.71
USH2AO75445 ERRFI1-203ENST00000469499 995 ntTSL 3 BASIC10.61□□□□□ -0.71
USH2AO75445 SPRED3-202ENST00000586301 1366 ntAPPRIS P1 TSL 5 BASIC10.61□□□□□ -0.71
USH2AO75445 STOX1-202ENST00000399162 935 ntTSL 1 (best) BASIC10.61□□□□□ -0.71
USH2AO75445 STOX1-203ENST00000399165 1135 ntTSL 1 (best) BASIC10.61□□□□□ -0.71
USH2AO75445 AQP1-202ENST00000409611 1140 ntTSL 1 (best) BASIC10.61□□□□□ -0.71
USH2AO75445 CREB3L2-203ENST00000452463 1105 ntTSL 1 (best) BASIC10.61□□□□□ -0.71
USH2AO75445 TARDBP-228ENST00000629725 1031 ntTSL 5 BASIC10.61□□□□□ -0.71
USH2AO75445 TADA2B-204ENST00000512388 1343 ntTSL 5 BASIC10.61□□□□□ -0.71
USH2AO75445 FMR1-202ENST00000334557 1295 ntTSL 1 (best) BASIC10.61□□□□□ -0.71
USH2AO75445 KRTAP5-2-201ENST00000412090 1118 ntAPPRIS P1 BASIC10.61□□□□□ -0.71
USH2AO75445 PTCHD3P2-201ENST00000424937 1205 ntBASIC10.61□□□□□ -0.71
USH2AO75445 TSPY20P-201ENST00000450910 630 ntBASIC10.61□□□□□ -0.71
USH2AO75445 AC007009.1-201ENST00000458624 429 ntTSL 2 BASIC10.61□□□□□ -0.71
USH2AO75445 GATA2-AS1-201ENST00000464242 1163 ntTSL 2 BASIC10.61□□□□□ -0.71
USH2AO75445 CITED1-201ENST00000246139 1231 ntAPPRIS P3 TSL 1 (best) BASIC10.61□□□□□ -0.71
USH2AO75445 MDK-204ENST00000395569 686 ntTSL 1 (best) BASIC10.61□□□□□ -0.71
USH2AO75445 C19orf24-201ENST00000409293 983 ntAPPRIS P1 TSL 2 BASIC10.61□□□□□ -0.71
USH2AO75445 AC099791.1-201ENST00000416440 715 ntBASIC10.61□□□□□ -0.71
USH2AO75445 ZNF696-204ENST00000520333 605 ntTSL 5 BASIC10.61□□□□□ -0.71
USH2AO75445 B3GALT4-204ENST00000451237 1694 ntAPPRIS P1 BASIC10.61□□□□□ -0.71
USH2AO75445 POLR2J-202ENST00000393794 784 ntTSL 1 (best) BASIC10.61□□□□□ -0.71
USH2AO75445 DPP10-AS1-201ENST00000432658 730 ntTSL 1 (best) BASIC10.61□□□□□ -0.71
USH2AO75445 ABHD14A-202ENST00000458031 1113 ntTSL 5 BASIC10.61□□□□□ -0.71
USH2AO75445 AC093627.4-202ENST00000479592 591 ntTSL 4 BASIC10.61□□□□□ -0.71
USH2AO75445 AP001363.2-201ENST00000538101 391 ntTSL 3 BASIC10.61□□□□□ -0.71
USH2AO75445 ARL8A-201ENST00000272217 1793 ntAPPRIS P1 TSL 1 (best) BASIC10.6□□□□□ -0.71
USH2AO75445 DNAJB2-202ENST00000392086 1946 ntAPPRIS P1 TSL 2 BASIC10.6□□□□□ -0.71
USH2AO75445 PLEKHO1-202ENST00000369126 1809 ntTSL 1 (best) BASIC10.6□□□□□ -0.71
USH2AO75445 CHST14-202ENST00000559991 1968 ntTSL 5 BASIC10.6□□□□□ -0.71
USH2AO75445 DUSP22-214ENST00000605315 867 ntTSL 5 BASIC10.6□□□□□ -0.71
USH2AO75445 DCAF8-211ENST00000475733 1426 ntTSL 1 (best) BASIC10.6□□□□□ -0.71
USH2AO75445 AMN-201ENST00000299155 1907 ntAPPRIS P2 TSL 1 (best) BASIC10.6□□□□□ -0.71
USH2AO75445 AK1-201ENST00000223836 736 ntTSL 3 BASIC10.6□□□□□ -0.71
Retrieved 100 of 98,524 protein–RNA pairs in 40.6 ms