Protein–RNA interactions for Protein: A2RU48

SMCO3, Single-pass membrane and coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 225 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMCO3A2RU48 HADH-209ENST00000603302 2032 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
SMCO3A2RU48 ODC1-201ENST00000234111 2653 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
SMCO3A2RU48 OSBPL5-208ENST00000478260 2653 ntTSL 2 BASIC18.83■□□□□ 0.61
SMCO3A2RU48 MYBL2-201ENST00000217026 2639 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
SMCO3A2RU48 CTXN1-201ENST00000318978 1274 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
SMCO3A2RU48 CHST11-203ENST00000547956 936 ntTSL 2 BASIC18.83■□□□□ 0.6
SMCO3A2RU48 PKMYT1-211ENST00000573944 1891 ntAPPRIS P1 TSL 5 BASIC18.83■□□□□ 0.6
SMCO3A2RU48 USP36-203ENST00000542802 6063 ntAPPRIS P2 TSL 1 (best) BASIC18.83■□□□□ 0.6
SMCO3A2RU48 ERF-201ENST00000222329 2698 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
SMCO3A2RU48 VPS53-211ENST00000571805 2356 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
SMCO3A2RU48 ZNF652-202ENST00000430262 4701 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
SMCO3A2RU48 TRAPPC5-204ENST00000596148 5498 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
SMCO3A2RU48 CEND1-201ENST00000330106 1649 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
SMCO3A2RU48 LRIG1-201ENST00000273261 5273 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
SMCO3A2RU48 PABPC1L2B-AS1-201ENST00000416989 1167 ntTSL 3 BASIC18.82■□□□□ 0.6
SMCO3A2RU48 AL662864.1-201ENST00000454388 1167 ntTSL 3 BASIC18.82■□□□□ 0.6
SMCO3A2RU48 ERLIN1-203ENST00000421367 5792 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
SMCO3A2RU48 HOXD1-201ENST00000331462 1975 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
SMCO3A2RU48 C5orf58-204ENST00000521850 2113 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
SMCO3A2RU48 SLC6A10P-202ENST00000431994 2058 ntBASIC18.81■□□□□ 0.6
SMCO3A2RU48 GAL3ST2-201ENST00000192314 1370 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
SMCO3A2RU48 C1QTNF5-202ENST00000528368 1356 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
SMCO3A2RU48 BICRA-204ENST00000614245 5697 ntAPPRIS ALT2 TSL 5 BASIC18.81■□□□□ 0.6
SMCO3A2RU48 TMEM203-201ENST00000343666 1557 ntAPPRIS P1 BASIC18.81■□□□□ 0.6
SMCO3A2RU48 GP1BB-201ENST00000366425 1553 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
SMCO3A2RU48 RUNX1-205ENST00000399240 1590 ntTSL 3 BASIC18.81■□□□□ 0.6
SMCO3A2RU48 GAL3ST3-203ENST00000527878 1599 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
SMCO3A2RU48 ATP8B2-201ENST00000368487 1523 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
SMCO3A2RU48 RANBP1-202ENST00000402752 1132 ntAPPRIS ALT1 TSL 1 (best) BASIC18.81■□□□□ 0.6
SMCO3A2RU48 KIF2A-202ENST00000401507 2539 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
SMCO3A2RU48 GET4-201ENST00000265857 2090 ntAPPRIS P2 TSL 1 (best) BASIC18.81■□□□□ 0.6
SMCO3A2RU48 ZDHHC1-201ENST00000348579 2047 ntAPPRIS P2 TSL 1 (best) BASIC18.81■□□□□ 0.6
SMCO3A2RU48 MYCN-201ENST00000281043 2602 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
SMCO3A2RU48 ZNF510-203ENST00000375231 5616 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
SMCO3A2RU48 H2AFY-217ENST00000511689 2789 ntAPPRIS P4 TSL 1 (best) BASIC18.81■□□□□ 0.6
SMCO3A2RU48 EPB41L4A-AS2-201ENST00000623705 1396 ntBASIC18.81■□□□□ 0.6
SMCO3A2RU48 KIF13A-207ENST00000502704 1330 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
SMCO3A2RU48 ZFYVE28-202ENST00000503000 1874 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
SMCO3A2RU48 ITGB3-202ENST00000571680 1668 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
SMCO3A2RU48 ACTR1B-201ENST00000289228 2243 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
SMCO3A2RU48 SDK1-202ENST00000404826 10397 ntAPPRIS P2 TSL 1 (best) BASIC18.8■□□□□ 0.6
SMCO3A2RU48 TMED2-201ENST00000262225 2560 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
SMCO3A2RU48 LSM14B-204ENST00000370915 1079 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
SMCO3A2RU48 CAAP1-205ENST00000520187 773 ntTSL 5 BASIC18.8■□□□□ 0.6
SMCO3A2RU48 FAM21EP-202ENST00000456967 2177 ntTSL 2 BASIC18.8■□□□□ 0.6
SMCO3A2RU48 AP000802.1-201ENST00000500537 1934 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
SMCO3A2RU48 CACTIN-AS1-201ENST00000592274 1913 ntTSL 2 BASIC18.8■□□□□ 0.6
SMCO3A2RU48 SYNGR3-201ENST00000248121 2051 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
SMCO3A2RU48 SCN1B-201ENST00000262631 1670 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
SMCO3A2RU48 BSCL2-205ENST00000403550 1693 ntAPPRIS P3 TSL 5 BASIC18.79■□□□□ 0.6
SMCO3A2RU48 ALDH16A1-203ENST00000540132 2174 ntTSL 2 BASIC18.79■□□□□ 0.6
SMCO3A2RU48 ZNF641-205ENST00000547026 1823 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
SMCO3A2RU48 POLR3H-201ENST00000337566 1330 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
SMCO3A2RU48 AC105219.1-201ENST00000531565 1963 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
SMCO3A2RU48 ATPAF1-213ENST00000574428 1760 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
SMCO3A2RU48 LINC01896-206ENST00000575722 1256 ntTSL 2 BASIC18.79■□□□□ 0.6
SMCO3A2RU48 CARM1-201ENST00000327064 3330 ntAPPRIS P2 TSL 1 (best) BASIC18.79■□□□□ 0.6
SMCO3A2RU48 TTC34-201ENST00000401095 8814 ntAPPRIS ALT2 TSL 5 BASIC18.78■□□□□ 0.6
SMCO3A2RU48 CCDC96-201ENST00000310085 2091 ntAPPRIS P1 BASIC18.78■□□□□ 0.6
SMCO3A2RU48 TRAP1-202ENST00000538171 2052 ntTSL 2 BASIC18.78■□□□□ 0.6
SMCO3A2RU48 PCYT2-204ENST00000570388 1474 ntTSL 2 BASIC18.78■□□□□ 0.6
SMCO3A2RU48 ZBTB45-205ENST00000600990 2159 ntAPPRIS P1 TSL 5 BASIC18.78■□□□□ 0.6
SMCO3A2RU48 AFDN-202ENST00000351017 5823 ntTSL 5 BASIC18.78■□□□□ 0.6
SMCO3A2RU48 HLA-V-202ENST00000446817 847 ntBASIC18.78■□□□□ 0.6
SMCO3A2RU48 UBE2K-201ENST00000261427 5245 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
SMCO3A2RU48 SSTR5-201ENST00000293897 1362 ntAPPRIS P1 BASIC18.78■□□□□ 0.6
SMCO3A2RU48 CBARP-202ENST00000382477 2453 ntAPPRIS ALT2 TSL 5 BASIC18.78■□□□□ 0.6
SMCO3A2RU48 MRPS7-203ENST00000579002 1638 ntTSL 2 BASIC18.78■□□□□ 0.6
SMCO3A2RU48 PBX1-202ENST00000367897 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC18.77■□□□□ 0.6
SMCO3A2RU48 C15orf59-201ENST00000379822 1342 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
SMCO3A2RU48 CCDC71L-201ENST00000315965 1575 ntAPPRIS ALT2 TSL 5 BASIC18.77■□□□□ 0.6
SMCO3A2RU48 MLST8-219ENST00000565250 1588 ntAPPRIS P3 TSL 3 BASIC18.77■□□□□ 0.6
SMCO3A2RU48 DES-201ENST00000373960 2248 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
SMCO3A2RU48 NPAS3-210ENST00000551492 2817 ntAPPRIS ALT2 TSL 5 BASIC18.77■□□□□ 0.6
SMCO3A2RU48 DUX4L11-201ENST00000611504 1267 ntBASIC18.77■□□□□ 0.6
SMCO3A2RU48 DUX4L12-201ENST00000614593 1267 ntBASIC18.77■□□□□ 0.6
SMCO3A2RU48 DUX4L14-201ENST00000621227 1267 ntBASIC18.77■□□□□ 0.6
SMCO3A2RU48 CLEC14A-201ENST00000342213 2267 ntAPPRIS P1 BASIC18.77■□□□□ 0.6
SMCO3A2RU48 TNFAIP2-209ENST00000560869 4683 ntAPPRIS P1 TSL 5 BASIC18.77■□□□□ 0.6
SMCO3A2RU48 LY6K-201ENST00000292430 2671 ntAPPRIS P3 TSL 1 (best) BASIC18.77■□□□□ 0.59
SMCO3A2RU48 CASP9-201ENST00000333868 2019 ntAPPRIS P2 TSL 1 (best) BASIC18.76■□□□□ 0.59
SMCO3A2RU48 ARHGAP29-202ENST00000370217 2043 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
SMCO3A2RU48 STRBP-202ENST00000360998 2990 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
SMCO3A2RU48 AQP10-201ENST00000324978 1791 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
SMCO3A2RU48 GDI1-204ENST00000447750 2474 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
SMCO3A2RU48 HES6-205ENST00000409356 528 ntTSL 2 BASIC18.76■□□□□ 0.59
SMCO3A2RU48 CEBPD-201ENST00000408965 2178 ntAPPRIS P1 BASIC18.76■□□□□ 0.59
SMCO3A2RU48 ABHD6-205ENST00000478253 2482 ntAPPRIS P1 TSL 2 BASIC18.76■□□□□ 0.59
SMCO3A2RU48 DENND1A-201ENST00000373618 3003 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
SMCO3A2RU48 AL137002.2-201ENST00000639766 2238 ntTSL 5 BASIC18.76■□□□□ 0.59
SMCO3A2RU48 SMIM10L2A-201ENST00000417443 5230 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
SMCO3A2RU48 SLC52A2-208ENST00000527078 1790 ntAPPRIS P1 TSL 5 BASIC18.76■□□□□ 0.59
SMCO3A2RU48 TIMM29-201ENST00000270502 1425 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
SMCO3A2RU48 TMSB15B-202ENST00000436583 2186 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
SMCO3A2RU48 SLC22A18-201ENST00000312221 1628 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
SMCO3A2RU48 EPHB2-207ENST00000544305 1709 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
SMCO3A2RU48 KLC3-202ENST00000470402 1820 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
SMCO3A2RU48 AC126177.7-201ENST00000547904 679 ntBASIC18.75■□□□□ 0.59
SMCO3A2RU48 DNAJB11-201ENST00000265028 1688 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
SMCO3A2RU48 POLE2-201ENST00000216367 1776 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 116.8 ms