Protein–RNA interactions for Protein: O43172

PRPF4, U4/U6 small nuclear ribonucleoprotein Prp4, humanhuman

Known RBP eCLIP

Length 522 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF4O43172 APEX1-202ENST00000398030 1387 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.575e-6■□□□□ 8.5
PRPF4O43172 APEX1-210ENST00000555414 1437 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.585e-6■□□□□ 8.5
PRPF4O43172 BAG6-239ENST00000424176 747 ntTSL 311.4□□□□□ -0.585e-6■□□□□ 8.5
PRPF4O43172 HNRNPC-202ENST00000420743 1559 ntTSL 2 BASIC11.29□□□□□ -0.61e-7■□□□□ 8.5
PRPF4O43172 PRRC2C-204ENST00000426496 10175 ntAPPRIS P2 TSL 1 (best) BASIC11.19□□□□□ -0.628e-8■□□□□ 8.5
PRPF4O43172 UBA52-213ENST00000599551 707 ntAPPRIS P1 TSL 2 BASIC11.18□□□□□ -0.623e-9■□□□□ 8.5
PRPF4O43172 HNRNPC-206ENST00000553444 724 ntTSL 211.08□□□□□ -0.641e-7■□□□□ 8.5
PRPF4O43172 TP73-AS1-205ENST00000587071 737 ntTSL 410.97□□□□□ -0.655e-6■□□□□ 8.5
PRPF4O43172 RBM19-202ENST00000392561 3574 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.665e-6■□□□□ 8.5
PRPF4O43172 APEX1-220ENST00000557592 640 ntTSL 510.84□□□□□ -0.675e-6■□□□□ 8.5
PRPF4O43172 TP73-AS1-206ENST00000608600 597 ntTSL 510.84□□□□□ -0.675e-6■□□□□ 8.5
PRPF4O43172 APEX1-206ENST00000553681 899 ntTSL 310.6□□□□□ -0.715e-6■□□□□ 8.5
PRPF4O43172 RBM19-203ENST00000545145 4422 ntAPPRIS P1 TSL 2 BASIC10.59□□□□□ -0.715e-6■□□□□ 8.5
PRPF4O43172 EEF1B2-209ENST00000460760 1025 ntTSL 210.5□□□□□ -0.735e-6■□□□□ 8.5
PRPF4O43172 UVSSA-204ENST00000505716 549 ntTSL 310.49□□□□□ -0.735e-6■□□□□ 8.5
PRPF4O43172 EEF1B2-205ENST00000429769 912 ntTSL 510.47□□□□□ -0.735e-6■□□□□ 8.5
PRPF4O43172 HNRNPC-225ENST00000556513 1403 ntTSL 5 BASIC10.38□□□□□ -0.751e-7■□□□□ 8.5
PRPF4O43172 KIF18B-202ENST00000587309 4217 ntAPPRIS ALT2 TSL 5 BASIC10.38□□□□□ -0.751e-7■□□□□ 8.5
PRPF4O43172 HNRNPC-214ENST00000554969 1924 ntAPPRIS P2 TSL 5 BASIC10.2□□□□□ -0.781e-7■□□□□ 8.5
PRPF4O43172 HNRNPC-230ENST00000557201 1371 ntTSL 1 (best) BASIC10.14□□□□□ -0.791e-7■□□□□ 8.5
PRPF4O43172 RBM19-204ENST00000546876 604 ntTSL 310.1□□□□□ -0.795e-6■□□□□ 8.5
PRPF4O43172 HNRNPC-232ENST00000557442 1308 ntTSL 210.07□□□□□ -0.81e-7■□□□□ 8.5
PRPF4O43172 PRRC2C-203ENST00000392078 1919 ntTSL 1 (best) BASIC10.04□□□□□ -0.88e-8■□□□□ 8.5
PRPF4O43172 EEF1B2-204ENST00000415904 649 ntTSL 310.04□□□□□ -0.85e-6■□□□□ 8.5
PRPF4O43172 HNRNPC-219ENST00000555309 1714 ntTSL 5 BASIC10.02□□□□□ -0.811e-7■□□□□ 8.5
PRPF4O43172 ALOX12P2-210ENST00000574727 4326 ntTSL 1 (best) BASIC9.97□□□□□ -0.815e-6■□□□□ 8.5
PRPF4O43172 MYH10-210ENST00000488329 538 ntTSL 29.88□□□□□ -0.835e-6■□□□□ 8.5
PRPF4O43172 ELOVL6-205ENST00000506625 610 ntTSL 49.83□□□□□ -0.845e-6■□□□□ 8.5
PRPF4O43172 HNRNPC-208ENST00000553753 1790 ntTSL 5 BASIC9.71□□□□□ -0.851e-7■□□□□ 8.5
PRPF4O43172 PKM-221ENST00000568743 580 ntTSL 1 (best)9.65□□□□□ -0.868e-8■□□□□ 8.5
PRPF4O43172 HNRNPC-223ENST00000556142 1599 ntTSL 5 BASIC9.64□□□□□ -0.871e-7■□□□□ 8.5
PRPF4O43172 APEX1-218ENST00000557344 671 ntTSL 29.48□□□□□ -0.895e-6■□□□□ 8.5
PRPF4O43172 HNRNPC-201ENST00000336053 3301 ntTSL 2 BASIC9.26□□□□□ -0.931e-7■□□□□ 8.5
PRPF4O43172 HNRNPC-222ENST00000555914 1658 ntAPPRIS ALT1 TSL 5 BASIC9.1□□□□□ -0.951e-7■□□□□ 8.5
PRPF4O43172 HNRNPC-211ENST00000554455 1784 ntTSL 1 (best) BASIC8.68□□□□□ -1.021e-7■□□□□ 8.5
PRPF4O43172 HNRNPC-227ENST00000556897 1252 ntAPPRIS P2 TSL 1 (best) BASIC8.55□□□□□ -1.041e-7■□□□□ 8.5
PRPF4O43172 PRRC2C-201ENST00000338920 10355 ntAPPRIS P2 TSL 5 BASIC8.45□□□□□ -1.068e-8■□□□□ 8.5
PRPF4O43172 EEF1B2-206ENST00000435123 389 ntTSL 58.42□□□□□ -1.065e-6■□□□□ 8.5
PRPF4O43172 LINC00261-202ENST00000564492 4912 ntTSL 3 BASIC8.11□□□□□ -1.115e-6■□□□□ 8.5
PRPF4O43172 ELOVL6-204ENST00000506461 575 ntTSL 48.08□□□□□ -1.125e-6■□□□□ 8.5
PRPF4O43172 HNRNPC-212ENST00000554539 748 ntTSL 58.01□□□□□ -1.131e-7■□□□□ 8.5
PRPF4O43172 HNRNPC-226ENST00000556628 1156 ntTSL 1 (best) BASIC7.36□□□□□ -1.231e-7■□□□□ 8.5
PRPF4O43172 APEX1-214ENST00000557054 888 ntTSL 5 BASIC7.34□□□□□ -1.235e-6■□□□□ 8.5
PRPF4O43172 SPCS2-206ENST00000528265 577 ntTSL 57.29□□□□□ -1.248e-8■□□□□ 8.5
PRPF4O43172 PRRC2C-202ENST00000367742 10366 ntAPPRIS ALT2 TSL 5 BASIC7.29□□□□□ -1.248e-8■□□□□ 8.5
PRPF4O43172 TRIO-203ENST00000502490 798 ntTSL 36.9□□□□□ -1.35e-6■□□□□ 8.5
PRPF4O43172 ELOVL6-202ENST00000394607 6454 ntAPPRIS P1 TSL 1 (best) BASIC6.19□□□□□ -1.425e-6■□□□□ 8.5
PRPF4O43172 UBA52-203ENST00000594527 357 ntTSL 35.91□□□□□ -1.463e-9■□□□□ 8.5
PRPF4O43172 EEF1B2-208ENST00000455150 670 ntTSL 55.7□□□□□ -1.55e-6■□□□□ 8.5
PRPF4O43172 UBA52-209ENST00000597451 514 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.513e-9■□□□□ 8.5
PRPF4O43172 UBA52-206ENST00000596272 508 ntTSL 25.16□□□□□ -1.583e-9■□□□□ 8.5
PRPF4O43172 VPS13A-212ENST00000493341 2001 ntTSL 24.8□□□□□ -1.645e-6■□□□□ 8.5
PRPF4O43172 ELOVL6-203ENST00000503885 458 ntTSL 44.79□□□□□ -1.645e-6■□□□□ 8.5
PRPF4O43172 HNRNPC-229ENST00000557157 698 ntTSL 54.69□□□□□ -1.661e-7■□□□□ 8.5
PRPF4O43172 ELOVL6-208ENST00000514184 607 ntTSL 33.93□□□□□ -1.785e-6■□□□□ 8.5
PRPF4O43172 HNRNPC-203ENST00000430246 4501 ntAPPRIS P2 TSL 1 (best) BASIC3.65□□□□□ -1.831e-7■□□□□ 8.5
PRPF4O43172 VPS13A-208ENST00000423463 2702 ntTSL 22.38□□□□□ -2.035e-6■□□□□ 8.5
PRPF4O43172 SEMA3G-201ENST00000231721 4899 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.112e-7■□□□□ 8.5
PRPF4O43172 OGT-206ENST00000462638 400 ntTSL 52.86□□□□□ -1.951e-6■□□□□ 8.5
PRPF4O43172 MARCH7-205ENST00000421037 559 ntTSL 414.36□□□□□ -0.112e-12■□□□□ 8.5
PRPF4O43172 MARCH7-209ENST00000539065 3303 ntTSL 2 BASIC12.6□□□□□ -0.392e-12■□□□□ 8.5
PRPF4O43172 MARCH7-207ENST00000473749 821 ntTSL 39.69□□□□□ -0.862e-12■□□□□ 8.5
PRPF4O43172 MARCH7-201ENST00000259050 5922 ntAPPRIS P1 TSL 1 (best) BASIC6.55□□□□□ -1.362e-12■□□□□ 8.5
PRPF4O43172 MARCH7-202ENST00000409175 2402 ntAPPRIS P1 TSL 2 BASIC3.55□□□□□ -1.842e-12■□□□□ 8.5
PRPF4O43172 CREBZF-203ENST00000525639 2850 ntTSL 518.98■□□□□ 0.632e-6■□□□□ 8.5
PRPF4O43172 CREBZF-201ENST00000260058 1431 ntTSL 216.24■□□□□ 0.192e-6■□□□□ 8.5
PRPF4O43172 CREBZF-205ENST00000527529 898 ntTSL 514.42□□□□□ -0.12e-6■□□□□ 8.5
PRPF4O43172 CREBZF-202ENST00000490820 4329 ntTSL 1 (best)14.34□□□□□ -0.112e-6■□□□□ 8.5
PRPF4O43172 CREBZF-204ENST00000527447 4037 ntAPPRIS P1 BASIC14.04□□□□□ -0.162e-6■□□□□ 8.5
PRPF4O43172 CREBZF-208ENST00000531515 724 ntTSL 313.56□□□□□ -0.242e-6■□□□□ 8.5
PRPF4O43172 CREBZF-209ENST00000534224 545 ntTSL 4 BASIC6.16□□□□□ -1.422e-6■□□□□ 8.5
PRPF4O43172 CSNK1D-216ENST00000581108 607 ntTSL 220.22■□□□□ 0.834e-8■□□□□ 8.5
PRPF4O43172 CSNK1D-201ENST00000269361 1088 ntTSL 516.65■□□□□ 0.264e-8■□□□□ 8.5
PRPF4O43172 TANK-202ENST00000392749 2171 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.144e-8■□□□□ 8.5
PRPF4O43172 CSNK1D-222ENST00000584377 2891 ntTSL 213.82□□□□□ -0.24e-8■□□□□ 8.5
PRPF4O43172 CSNK1D-209ENST00000578904 1269 ntTSL 313.79□□□□□ -0.24e-8■□□□□ 8.5
PRPF4O43172 TANK-223ENST00000494976 636 ntTSL 312.43□□□□□ -0.424e-8■□□□□ 8.5
PRPF4O43172 MINK1-210ENST00000574871 3150 ntTSL 212□□□□□ -0.494e-8■□□□□ 8.5
PRPF4O43172 SAP130-204ENST00000424298 849 ntTSL 211.31□□□□□ -0.64e-8■□□□□ 8.5
PRPF4O43172 TANK-215ENST00000457887 762 ntTSL 510.82□□□□□ -0.684e-8■□□□□ 8.5
PRPF4O43172 TANK-221ENST00000483622 566 ntTSL 58.95□□□□□ -0.984e-8■□□□□ 8.5
PRPF4O43172 TANK-207ENST00000429217 762 ntTSL 58.51□□□□□ -1.054e-8■□□□□ 8.5
PRPF4O43172 TANK-216ENST00000461338 674 ntTSL 38.51□□□□□ -1.054e-8■□□□□ 8.5
PRPF4O43172 TANK-212ENST00000440506 550 ntTSL 36.59□□□□□ -1.354e-8■□□□□ 8.5
PRPF4O43172 TANK-213ENST00000441987 533 ntTSL 56.15□□□□□ -1.424e-8■□□□□ 8.5
PRPF4O43172 TANK-203ENST00000402568 878 ntTSL 5 BASIC5.05□□□□□ -1.64e-8■□□□□ 8.5
PRPF4O43172 TANK-217ENST00000463502 570 ntTSL 34.6□□□□□ -1.674e-8■□□□□ 8.5
PRPF4O43172 TANK-205ENST00000405852 2155 ntTSL 5 BASIC4.51□□□□□ -1.694e-8■□□□□ 8.5
PRPF4O43172 TANK-206ENST00000406287 875 ntTSL 5 BASIC4.3□□□□□ -1.724e-8■□□□□ 8.5
PRPF4O43172 TANK-220ENST00000477952 427 ntTSL 24.1□□□□□ -1.754e-8■□□□□ 8.5
PRPF4O43172 TANK-209ENST00000432692 576 ntTSL 53.92□□□□□ -1.784e-8■□□□□ 8.5
PRPF4O43172 TANK-208ENST00000432002 600 ntTSL 53.18□□□□□ -1.94e-8■□□□□ 8.5
PRPF4O43172 TANK-201ENST00000259075 2152 ntAPPRIS P1 TSL 1 (best) BASIC2.57□□□□□ -24e-8■□□□□ 8.5
PRPF4O43172 MLLT6-203ENST00000614769 657 ntTSL 29.82□□□□□ -0.844e-6■□□□□ 8.5
PRPF4O43172 GATAD1-201ENST00000287957 3361 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.729e-11■□□□□ 8.5
PRPF4O43172 METTL3-210ENST00000543235 2124 ntTSL 514.78□□□□□ -0.048e-7■□□□□ 8.5
PRPF4O43172 METTL3-201ENST00000298717 2015 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.38e-7■□□□□ 8.5
PRPF4O43172 METTL3-206ENST00000537163 2030 ntTSL 512.9□□□□□ -0.348e-7■□□□□ 8.5
PRPF4O43172 METTL3-211ENST00000544248 1570 ntTSL 512.7□□□□□ -0.388e-7■□□□□ 8.5
PRPF4O43172 SF3B2-209ENST00000530322 1163 ntTSL 516.01■□□□□ 0.152e-6■□□□□ 8.4
Retrieved 100 of 20,551 protein–RNA pairs in 318.8 ms